Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract

The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2...

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Published inDevelopmental cell Vol. 53; no. 5; pp. 514 - 529.e3
Main Authors Smith, Joan C., Sausville, Erin L., Girish, Vishruth, Yuan, Monet Lou, Vasudevan, Anand, John, Kristen M., Sheltzer, Jason M.
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 08.06.2020
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Abstract The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination. [Display omitted] •Lung ACE2 levels do not vary by age or sex, but smokers exhibit upregulated ACE2•ACE2 is expressed in several lung cell types, including the secretory lineage•Chronic smoking triggers the expansion of ACE2+ secretory cells•ACE2 is also upregulated by viral infections and interferon exposure Smith et al. report that smokers’ lungs harbor higher levels of the coronavirus receptor ACE2. They further demonstrate that ACE2 is expressed in a subpopulation of secretory cells that expand in response to smoke exposure. Finally, they establish that ACE2 is an interferon-stimulated gene that is upregulated by viral infections.
AbstractList The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination.
The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination. • Lung ACE2 levels do not vary by age or sex, but smokers exhibit upregulated ACE2 • ACE2 is expressed in several lung cell types, including the secretory lineage • Chronic smoking triggers the expansion of ACE2 + secretory cells • ACE2 is also upregulated by viral infections and interferon exposure Smith et al. report that smokers’ lungs harbor higher levels of the coronavirus receptor ACE2. They further demonstrate that ACE2 is expressed in a subpopulation of secretory cells that expand in response to smoke exposure. Finally, they establish that ACE2 is an interferon-stimulated gene that is upregulated by viral infections.
The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination.The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination.
The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin converting enzyme 2 (ACE2), the SARS-CoV-2 receptor, in rodent and human lungs. Using single-cell sequencing data, we demonstrate that ACE2 is expressed in a subset of secretory cells in the respiratory tract. Chronic smoke exposure triggers the expansion of this cell population and a concomitant increase in ACE2 expression. In contrast, quitting smoking decreases the abundance of these secretory cells and reduces ACE2 levels. Finally, we demonstrate that ACE2 expression is responsive to inflammatory signaling and can be upregulated by viral infections or interferon treatment. Taken together, these results may partially explain why smokers are particularly susceptible to severe SARS-CoV-2 infections. Furthermore, our work identifies ACE2 as an interferon-stimulated gene in lung cells, suggesting that SARS-CoV-2 infections could create positive feedback loops that increase ACE2 levels and facilitate viral dissemination. [Display omitted] •Lung ACE2 levels do not vary by age or sex, but smokers exhibit upregulated ACE2•ACE2 is expressed in several lung cell types, including the secretory lineage•Chronic smoking triggers the expansion of ACE2+ secretory cells•ACE2 is also upregulated by viral infections and interferon exposure Smith et al. report that smokers’ lungs harbor higher levels of the coronavirus receptor ACE2. They further demonstrate that ACE2 is expressed in a subpopulation of secretory cells that expand in response to smoke exposure. Finally, they establish that ACE2 is an interferon-stimulated gene that is upregulated by viral infections.
Author Vasudevan, Anand
Girish, Vishruth
John, Kristen M.
Sausville, Erin L.
Smith, Joan C.
Yuan, Monet Lou
Sheltzer, Jason M.
Author_xml – sequence: 1
  givenname: Joan C.
  surname: Smith
  fullname: Smith, Joan C.
  organization: Google, Inc., New York City, NY 10011, USA
– sequence: 2
  givenname: Erin L.
  surname: Sausville
  fullname: Sausville, Erin L.
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
– sequence: 3
  givenname: Vishruth
  surname: Girish
  fullname: Girish, Vishruth
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
– sequence: 4
  givenname: Monet Lou
  surname: Yuan
  fullname: Yuan, Monet Lou
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
– sequence: 5
  givenname: Anand
  surname: Vasudevan
  fullname: Vasudevan, Anand
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
– sequence: 6
  givenname: Kristen M.
  surname: John
  fullname: John, Kristen M.
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
– sequence: 7
  givenname: Jason M.
  surname: Sheltzer
  fullname: Sheltzer, Jason M.
  email: sheltzer@cshl.edu
  organization: Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA
BackLink https://www.ncbi.nlm.nih.gov/pubmed/32425701$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1016/S1473-3099(20)30257-7
10.1038/nature02145
10.1016/j.ijid.2020.03.070
10.1007/s12031-007-9006-x
10.1172/JCI137647
10.3390/ijerph6010209
10.1016/j.devcel.2020.01.034
10.1146/annurev.iy.07.040189.002011
10.1126/science.1260419
10.1172/JCI137244
10.3390/jcm9030841
10.1002/jmv.25889
10.1093/toxsci/kfq039
10.1128/MMBR.65.1.131-150.2001
10.1016/j.cell.2020.04.035
10.1289/EHP1937
10.7554/eLife.27041
10.1152/ajplung.00139.2017
10.1172/jci.insight.131597
10.1016/S0002-9440(10)63174-4
10.1093/nar/gks1215
10.1152/physiolgenomics.00208.2005
10.1016/j.cell.2019.12.023
10.1038/ng.3222
10.1038/s41467-019-13056-x
10.1093/toxsci/kfy053
10.1093/jnci/djt212
10.1002/jcb.21248
10.1016/j.virusres.2014.11.021
10.1038/ncomms4230
10.1002/path.1570
10.1136/bmj.283.6306.1567
10.1093/jnci/93.14.1081
10.1038/s41598-020-63345-5
10.1002/dvg.20674
10.1038/s41586-020-2012-7
10.1016/j.lfs.2005.09.038
10.1164/rccm.200803-490OC
10.1016/j.ajpath.2015.04.023
10.1038/nrcardio.2014.59
10.1152/physiolgenomics.00060.2007
10.1038/s41467-019-08831-9
10.1101/gad.279836.116
10.1016/j.ijantimicag.2020.105954
10.1016/j.jaut.2009.12.003
10.3389/fphys.2012.00342
10.1016/S0079-6107(02)00037-8
10.1128/mBio.00665-17
10.1371/journal.pmed.0020251
10.1016/j.cell.2020.02.052
10.1111/j.1752-8062.2009.00129.x
10.1038/518027a
10.1513/AnnalsATS.201706-464MG
10.1152/ajpregu.00099.2018
10.1002/path.1560
10.1038/s41586-020-2196-x
10.1007/s00109-012-0859-2
10.1242/dmm.006031
10.1089/bio.2015.0032
10.1165/rcmb.2006-0466OC
10.1006/bbrc.1999.2040
10.1016/j.burns.2015.04.010
10.1007/s12031-007-9025-7
10.1038/nm1267
10.1042/bj3180319
10.1038/s41586-018-0393-7
10.1038/nature11003
10.1038/ng.263
10.1038/srep44232
10.1038/s41586-018-0394-6
10.1155/2015/206937
10.1289/ehp.0800199
10.1371/journal.pone.0088848
10.1164/ajrccm.161.3.9907080
10.1016/j.cell.2009.12.018
10.1038/nbt1210-1248
10.18632/aging.101056
10.1378/chest.127.2.558
10.25080/Majora-92bf1922-011
10.1007/BF01457412
10.2500/ajra.2009.23.3280
10.1186/s13059-017-1382-0
10.1164/rccm.201608-1672OC
10.15252/embj.2020105114
10.1165/rcmb.2015-0128PS
10.1164/ajrccm.155.1.9001319
10.1001/jama.2020.2648
10.1093/nar/30.1.207
10.1038/nature03712
10.1038/s41591-020-0817-4
10.1164/rccm.201712-2410OC
10.1513/AnnalsATS.201802-128AW
10.1111/acel.12118
10.7554/eLife.36865
10.1038/mi.2014.6
10.1038/ng.2653
10.1128/JVI.02012-06
10.1093/nar/gkz369
10.1371/journal.pone.0069374
10.1165/rcmb.2013-0199OC
10.1016/j.cytogfr.2007.06.016
10.1056/NEJMoa2002032
10.1016/j.rmed.2020.105941
10.1128/JVI.79.23.14614-14621.2005
10.1128/JVI.06757-11
10.1183/13993003.00688-2020
10.1165/rcmb.2012-0368OC
10.1016/j.stem.2009.04.002
10.1056/NEJMra0910061
10.1165/rcmb.2004-0261OC
10.1016/S0140-6736(20)30627-9
10.1186/1465-9921-15-9
10.1056/NEJMoa2001017
10.1186/s12931-019-1105-z
10.1513/pats.200803-025HR
10.1038/ng.2764
10.1158/0008-5472.CAN-10-2046
10.1038/s41586-020-2008-3
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References Baumgartner, Samet, Stidley, Colby, Waldron (bib5) 1997; 155
Jonker, Melis, Kuiper, van der Hoeven, Wackers, Robinson, van der Horst, Dollé, Vijg, Breit (bib51) 2013; 12
Montoro, Haber, Biton, Vinarsky, Lin, Birket, Yuan, Chen, Leung, Villoria (bib74) 2018; 560
Kasper, Behrens, Schuh, Müller (bib52) 1995; 103
Ziegler, Allon, Nyquist, Mbano, Miao, Tzouanas, Cao, Yousif, Bals, Hauser (bib148) 2020
(bib82) 2004
Kim, Lim, Lee, Lee, Kim, Oh (bib53) 2015; 2015
Nemajerova, Kramer, Siller, Herr, Shomroni, Pena, Gallinas Suazo, Glaser, Wildung, Steffen (bib78) 2016; 30
Wu, McGoogan (bib131) 2020; 323
Xu, Li, Zhu, Liang, Fang, Gong, Guo, Sun, Zhao, Shen (bib133) 2020; 26
Mitchell, Eisfeld, Sims, McDermott, Matzke, Webb-Robertson, Tilton, Tchitchek, Josset, Li (bib72) 2013; 8
Chappell, Israel, Simon, Pott, Safi, Eklund, Sexton, Bodnar, Lieb, Crawford (bib13) 2017; 125
Chen, Shan, Qian (bib15) 2020
Moon, Kim, Ko, Kim, Seo, Oh, Lee (bib75) 2010; 48
Oakes, Fuchs, Gardner, Lazartigues, Yue (bib81) 2018; 315
Gruber, Coldren, Woolum, Cosgrove, Zeng, Barón, Moore, Cool, Worthen, Brown, Geraci (bib36) 2006; 35
Thomas (bib112) 1989; 7
Misra, Lee, Singh, Huang, Thimmulappa, Mitzner, Biswal, Tankersley (bib71) 2007; 31
Regev, Teichmann, Lander, Amit, Benoist, Birney, Bodenmiller, Campbell, Carninci, Clatworthy (bib93) 2017; 6
Fahy, Dickey (bib24) 2010; 363
Saetta, Turato, Baraldo, Zanin, Braccioni, Mapp, Maestrelli, Cavallesco, Papi, Fabbri (bib102) 2000; 161
Gu, Karp, Brody, Pierce, Welsh, Holtzman, Ben-Shahar (bib38) 2014; 50
Lippi, Henry (bib62) 2020; 167
Uhlen, Oksvold, Fagerberg, Lundberg, Jonasson, Forsberg, Zwahlen, Kampf, Wester, Hober (bib117) 2010; 28
Liu, Di (bib63) 2012; 3
Wiener, Cao, Hinds, Ramirez, Williams (bib126) 2007; 101
Reyfman, Walter, Joshi, Anekalla, McQuattie-Pimentel, Chiu, Fernandez, Akbarpour, Chen, Ren (bib95) 2019; 199
Whitsett, Weaver (bib125) 2015; 53
Citrin, Shankavaram, Horton, Shield, Zhao, Asano, White, Sowers, Thetford, Chung (bib16) 2013; 105
Crowley, Zhabotynsky, Sun, Huang, Pakatci, Kim, Wang, Morgan, Calaway, Aylor (bib20) 2015; 47
Whitsett (bib124) 2018; 15
Zhang, Ouyang, Fu, Wang, Han, Huang, Jia, Song, Fu (bib142) 2020
Wu, Zheng (bib129) 2020
Yu, Fuscoe, Zhao, Guo, Jia, Qing, Bannon, Lancashire, Bao, Du (bib138) 2014; 5
Zhou, Yang, Wang, Hu, Zhang, Zhang, Si, Zhu, Li, Huang (bib146) 2020; 579
Hu, Chen, Fu, Gao, Long, Ren, Zuo, Li, Wang, Xv (bib45) 2020
McCray, Pewe, Wohlford-Lenane, Hickey, Manzel, Shi, Netland, Jia, Halabi, Sigmund (bib67) 2007; 81
Millet, Whittaker (bib70) 2015; 202
Laniado-Laborín (bib57) 2009; 6
Pardo, Gibson, Cisneros, Richards, Yang, Becerril, Yousem, Herrera, Ruiz, Selman, Kaminski (bib85) 2005; 2
Voraphani, Gladwin, Contreras, Kaminski, Tedrow, Milosevic, Bleecker, Meyers, Ray, Ray (bib121) 2014; 7
González-Mariscal, Betanzos, Nava, Jaramillo (bib35) 2003; 81
Arnson, Shoenfeld, Amital (bib3) 2010; 34
Hamming, Timens, Bulthuis, Lely, Navis, van Goor (bib41) 2004; 203
Shi, Tan, Chen, Liu, Huang, Ou, Deng (bib107) 2020
Guha, Vasconcelos, Zhao, Gower, Rajagopal, Cardoso (bib40) 2014; 9
Schaum, Lehallier, Hahn, Hosseinzadeh, Lee, Sit, Lee, Losada, Zardeneta, Pálovics (bib104) 2019
Jiang, Yang, Zhang, Dong, Wang, Zhang, Liu, Zhang, Zhang (bib50) 2014; 11
Ruan (bib100) 2020
Roumier, Paule, Groh, Vallee, Ackermann (bib99) 2020
Hoffmann, Kleine-Weber, Schroeder, Krüger, Herrler, Erichsen, Schiergens, Herrler, Wu, Nitsche (bib43) 2020; 181
Cancer Genome Atlas Research Network, Weinstein, Collisson, Mills, Shaw, Ozenberger, Ellrott, Shmulevich, Sander, Stuart (bib111) 2013; 45
Lee, Liu, Lee, Kurie, Khuri, Ibarguen, Morice, Walsh, Ro, Broxson (bib58) 2001; 93
Butler, Fukui, Salit, Shaykhiev, Mezey, Hackett, Crystal (bib10) 2011; 71
Ding, He, Zhang, Huang, Che, Hou, Wang, Shen, Qiu, Li (bib22) 2004; 203
(bib37) 2013; 45
Upadhyay, Palmberg (bib119) 2018; 164
Barretina, Caponigro, Stransky, Venkatesan, Margolin, Kim, Wilson, Lehár, Kryukov, Sonkin (bib4) 2012; 483
Rabin (bib90) 2020
The Tabula Muris Consortium, Pisco, McGeever, Schaum, Karkanias, Neff, Darmanis, Wyss-Coray, Quake (bib17) 2020
Menachery, Mitchell, Cockrell, Gralinski, Yount, Graham, McAnarney, Douglas, Scobey, Beall (bib69) 2017; 8
Tomita, van Bokhoven, Jansen, Bussemakers, Schalken (bib113) 2000; 267
Yilin, Yandong, Faguang (bib136) 2015; 41
Sungnak, Huang, Bécavin, Berg, Queen, Litvinukova, Talavera-López, Maatz, Reichart, Sampaziotis (bib109) 2020
Li, Moore, Vasilieva, Sui, Wong, Berne, Somasundaran, Sullivan, Luzuriaga, Greenough (bib61) 2003; 426
Zhao, Meng, Kumar, Wu, Huang, Lian, Deng, Lin (bib143) 2020
Muus, Luecken, Eraslan, Waghray, Heimberg, Sikkema, Kobayashi, Vaishnav, Subramanian, Smilie (bib77) 2020
Luo, Xia, Yang, Wang, Guo, Xiong, Jiang, Liu, Yan, Zhou (bib65) 2020
Li, Bernau, Sandbo, Gu, Preissl, Sun (bib60) 2018; 7
Martinez-Anton, Sokolowska, Kern, Davis, Alsaaty, Taubenberger, Sun, Cai, Danner, Eberlein (bib66) 2013; 49
Pedersen, Ho (bib87) 2020; 130
Zhu, Zhang, Wang, Li, Yang, Song, Zhao, Huang, Shi, Lu (bib147) 2020; 382
Booeshaghi, Pachter (bib7) 2020
Ferrari, Raizada, Fior-Chadi (bib27) 2008; 35
Leung, Yang, Tam, Shaipanich, Hackett, Singhera, Dorscheid, Sin (bib59) 2020; 55
Qi, Yan, Tang, Peng, Yu, Feng, Yuan, Zhang, Chen, Yuan (bib89) 2020
Morrow, Zhou, Lao, Jiang, DeMeo, Cho, Qiu, Cloonan, Pinto-Plata, Celli (bib76) 2017; 7
Gantier, Williams (bib31) 2007; 18
Kuba, Imai, Rao, Gao, Guo, Guan, Huan, Yang, Zhang, Deng (bib56) 2005; 11
Franks, Colby, Travis, Tuder, Reynolds, Brody, Cardoso, Crystal, Drake, Engelhardt (bib29) 2008; 5
McDonough, Ahangari, Li, Jain, Verleden, Herazo-Maya, Vukmirovic, DeIuliis, Tzouvelekis, Tanabe (bib68) 2019; 4
Patanavanich, Glantz (bib86) 2020
Nusinow, Gygi (bib79) 2020
Imai, Kuba, Rao, Huan, Guo, Guan, Yang, Sarao, Wada, Leong-Poi (bib46) 2005; 436
Wolf, Angerer, Theis (bib127) 2018; 19
Brake, Barnsley, Lu, McAlinden, Eapen, Sohal (bib9) 2020; 9
Ioannidis, McNally, Willette, Peeples, Chaussabel, Durbin, Ramilo, Mejias, Flaño (bib47) 2012; 86
Ross, Dailey, Brighton, Devlin (bib98) 2007; 37
Hovenberg, Davies, Carlstedt (bib44) 1996; 318
Kozul, Hampton, Davey, Gosse, Nomikos, Eisenhauer, Weiss, Thorpe, Ihnat, Hamilton (bib55) 2009; 117
Uhlén, Fagerberg, Hallström, Lindskog, Oksvold, Mardinoglu, Sivertsson, Kampf, Sjöstedt, Asplund (bib116) 2015; 347
Yang, Shen, Li, Yuan, Yang, Wang, Li, Li, Xing, Peng (bib135) 2020
Zang, Castro, McCune, Zeng, Rothlauf, Sonnek, Liu, Brulois, Wang, Greenberg (bib140) 2020
Gindele, Kiechle, Benediktus, Birk, Brendel, Heinemann, Wohnhaas, LeBlanc, Zhang, Strulovici-Barel (bib33) 2020; 10
Rawlins, Okubo, Xue, Brass, Auten, Hasegawa, Wang, Hogan (bib92) 2009; 4
Cai (bib11) 2020
Ferrari, Raizada, Fior-Chadi (bib26) 2007; 33
Cruz, López-Giraldo, Noell, Casas-Recasens, Garcia, Molins, Juan, Fernandez, Agustí, Faner (bib21) 2019; 20
Shapira, Gat-Viks, Shum, Dricot, de Grace, Wu, Gupta, Hao, Silver, Root (bib106) 2009; 139
Yue, Basting, Flanagan, Xu, Lobell, Gilpin, Gardner, Lazartigues (bib139) 2018; 15
Bradbury, Plückthun (bib8) 2015; 518
Mogensen, Paludan (bib73) 2001; 65
Wagener, Zwinderman, Luiten, Fokkens, Bel, Sterk, van Drunen (bib122) 2014; 15
Angelidis, Simon, Fernandez, Strunz, Mayr, Greiffo, Tsitsiridis, Ansari, Graf, Strom (bib1) 2019; 10
Seabold, S., and Perktold, J. (2010). Statsmodels: econometric and statistical modeling with Python Proc. of the 9th Python in science conf. (SCIPY 2010), pp. 92–96.
Tamashiro, Xiong, Anselmo-Lima, Kreindler, Palmer, Cohen (bib110) 2009; 23
Turetz, O’Connor, Tilley, Strulovici-Barel, Salit, Dang, Teater, Mezey, Clark, Crystal (bib115) 2009; 2
(bib83) 2020
Jia, Look, Shi, Hickey, Pewe, Netland, Farzan, Wohlford-Lenane, Perlman, McCray (bib48) 2005; 79
Rey-Parra, Vadivel, Coltan, Hall, Eaton, Schuster, Loibner, Penninger, Kassiri, Oudit, Thébaud (bib96) 2012; 90
Ulyanov (bib118) 2020
Wölfel, Corman, Guggemos, Seilmaier, Zange, Müller, Niemeyer, Jones, Vollmar, Rothe (bib128) 2020
Ardini-Poleske, Clark, Ansong, Carson, Corley, Deutsch, Hagood, Kaminski, Mariani, Potter (bib2) 2017; 313
Rock, Randell, Hogan (bib97) 2010; 3
Haston, Cory, Lafontaine, Dorion, Hallett (bib42) 2006; 25
Wang, Pan, Zhang, Fan, Han, Zhao, Miao, Xu, Guan, Deng (bib123) 2020; 95
Carithers, Ardlie, Barcus, Branton, Britton, Buia, Compton, DeLuca, Peter-Demchok, Gelfand (bib12) 2015; 13
Zhang, Wu, Li, Zhao, Wang (bib141) 2020
Lukassen, Chua, Trefzer, Kahn, Schneider, Muley, Winter, Meister, Veith, Boots (bib64) 2020
Gan, Man, Sin (bib30) 2005; 127
Remuzzi, Remuzzi (bib94) 2020; 395
Cosio, Hale, Niewoehner (bib18) 1980; 122
Raudvere, Kolberg, Kuzmin, Arak, Adler, Peterson, Vilo (bib91) 2019; 47
Xie, Chen, Wang, Zhang, Liu (bib132) 2006; 78
Jiang, Schaefer, Chu (bib49) 2018
Nusinow, Szpyt, Ghandi, Rose, McDonald, Kalocsay, Jané-Valbuena, Gelfand, Schweppe, Jedrychowski (bib80) 2020; 180
Papatheodorou, Moreno, Manning, Fuentes, George, Fexova, Fonseca, Füllgrabe, Green, Huang (bib84) 2020; 48
Travaglini, Nabhan, Penland, Sinha, Gillich, Sit, Chang, Conley, Mori, Seita (bib114) 2020
Yu, Ng, Habacher, Roy (bib137) 2008; 40
Gebel, Diehl, Pype, Friedrichs, Weiler, Schüller, Xu, Taguchi, Yamamoto, Müller (bib32) 2010; 115
Goldfarbmuren, Jackson, Sajuthi, Dyjack, Li, Rios, Plender, Montgomery, Everman, Vladar (bib34) 2019
Wu, Zhao, Yu, Chen, Wang, Song, Hu, Tao, Tian, Pei (bib130) 2020; 579
(bib28) 2016
Zhao, Zhang, Li, Ma, Gu, Hou, Guo, Wu, Bai (bib144) 2020
Rusinova, Forster, Yu, Kannan, Masse, Cumming, Chapman, Hertzog (bib101) 2013; 41
Vasudevan, Baruah, Smith, Wang, Sayles, Andrews, Kendall, Leu, Chunduri, Levy (bib120) 2020; 52
Edgar, Domrachev, Lash (bib23) 2002; 30
Soundararajan, Stearns, Czachor, Fukumoto, Turn, Westermann-Clark, Breitzig, Tan, Lockey, King, Kolliputi (bib108) 2016; 8
Zhao, Zhao, Wang, Zhou, Ma, Zuo (bib145) 2020
Crouser, Culver, Knox, Julian, Shao, Abraham, Liyanarachchi, Macre, Wewers, Gavrilin (bib19) 2009; 179
Salaun, de Saint-Vis, Pacheco, Pacheco, Riesler, Isaac, Leroux, Clair-Moninot, Pin, Griffith (bib103) 2004; 164
Chen, Wu, Guo, Cao, Huang, Wang, Wang, Zhang, Chen, Yu (bib14) 2020; 130
Bertram, Rogers (bib6) 1981; 283
Plasschaert, Žilio
Whitsett (10.1016/j.devcel.2020.05.012_bib124) 2018; 15
Roumier (10.1016/j.devcel.2020.05.012_bib99) 2020
Whitsett (10.1016/j.devcel.2020.05.012_bib125) 2015; 53
Yilin (10.1016/j.devcel.2020.05.012_bib136) 2015; 41
Jia (10.1016/j.devcel.2020.05.012_bib48) 2005; 79
Jiang (10.1016/j.devcel.2020.05.012_bib50) 2014; 11
(10.1016/j.devcel.2020.05.012_bib37) 2013; 45
Hoffmann (10.1016/j.devcel.2020.05.012_bib43) 2020; 181
Cai (10.1016/j.devcel.2020.05.012_bib11)
Franks (10.1016/j.devcel.2020.05.012_bib29) 2008; 5
Soundararajan (10.1016/j.devcel.2020.05.012_bib108) 2016; 8
Yue (10.1016/j.devcel.2020.05.012_bib139) 2018; 15
Moon (10.1016/j.devcel.2020.05.012_bib75) 2010; 48
Luo (10.1016/j.devcel.2020.05.012_bib65) 2020
Wu (10.1016/j.devcel.2020.05.012_bib130) 2020; 579
McCray (10.1016/j.devcel.2020.05.012_bib67) 2007; 81
Millet (10.1016/j.devcel.2020.05.012_bib70) 2015; 202
Uhlen (10.1016/j.devcel.2020.05.012_bib117) 2010; 28
Tamashiro (10.1016/j.devcel.2020.05.012_bib110) 2009; 23
Travaglini (10.1016/j.devcel.2020.05.012_bib114) 2020
Morrow (10.1016/j.devcel.2020.05.012_bib76) 2017; 7
Yu (10.1016/j.devcel.2020.05.012_bib137) 2008; 40
Ferrari (10.1016/j.devcel.2020.05.012_bib27) 2008; 35
Ruan (10.1016/j.devcel.2020.05.012_bib100) 2020
Zhang (10.1016/j.devcel.2020.05.012_bib142) 2020
Booeshaghi (10.1016/j.devcel.2020.05.012_bib7) 2020
Shapira (10.1016/j.devcel.2020.05.012_bib106) 2009; 139
Edgar (10.1016/j.devcel.2020.05.012_bib23) 2002; 30
Zhao (10.1016/j.devcel.2020.05.012_bib143) 2020
Uhlén (10.1016/j.devcel.2020.05.012_bib116) 2015; 347
Zhu (10.1016/j.devcel.2020.05.012_bib147) 2020; 382
Barretina (10.1016/j.devcel.2020.05.012_bib4) 2012; 483
Ardini-Poleske (10.1016/j.devcel.2020.05.012_bib2) 2017; 313
Salaun (10.1016/j.devcel.2020.05.012_bib103) 2004; 164
Kozul (10.1016/j.devcel.2020.05.012_bib55) 2009; 117
Haston (10.1016/j.devcel.2020.05.012_bib42) 2006; 25
Papatheodorou (10.1016/j.devcel.2020.05.012_bib84) 2020; 48
Wang (10.1016/j.devcel.2020.05.012_bib123) 2020; 95
Pedersen (10.1016/j.devcel.2020.05.012_bib87) 2020; 130
Brake (10.1016/j.devcel.2020.05.012_bib9) 2020; 9
Xie (10.1016/j.devcel.2020.05.012_bib132) 2006; 78
Nusinow (10.1016/j.devcel.2020.05.012_bib79) 2020
Oakes (10.1016/j.devcel.2020.05.012_bib81) 2018; 315
Yang (10.1016/j.devcel.2020.05.012_bib134) 2017; 196
Ulyanov (10.1016/j.devcel.2020.05.012_bib118) 2020
Leung (10.1016/j.devcel.2020.05.012_bib59) 2020; 55
Regev (10.1016/j.devcel.2020.05.012_bib93) 2017; 6
Saetta (10.1016/j.devcel.2020.05.012_bib102) 2000; 161
Wagener (10.1016/j.devcel.2020.05.012_bib122) 2014; 15
Li (10.1016/j.devcel.2020.05.012_bib61) 2003; 426
Martinez-Anton (10.1016/j.devcel.2020.05.012_bib66) 2013; 49
Ding (10.1016/j.devcel.2020.05.012_bib22) 2004; 203
Ioannidis (10.1016/j.devcel.2020.05.012_bib47) 2012; 86
Wolf (10.1016/j.devcel.2020.05.012_bib127) 2018; 19
Ziegler (10.1016/j.devcel.2020.05.012_bib148) 2020
(10.1016/j.devcel.2020.05.012_bib28) 2016
McDonough (10.1016/j.devcel.2020.05.012_bib68) 2019; 4
Zhao (10.1016/j.devcel.2020.05.012_bib144) 2020
Cosio (10.1016/j.devcel.2020.05.012_bib18) 1980; 122
Qi (10.1016/j.devcel.2020.05.012_bib89) 2020
Turetz (10.1016/j.devcel.2020.05.012_bib115) 2009; 2
Rabin (10.1016/j.devcel.2020.05.012_bib90) 2020
Zhang (10.1016/j.devcel.2020.05.012_bib141) 2020
Pardo (10.1016/j.devcel.2020.05.012_bib85) 2005; 2
Liu (10.1016/j.devcel.2020.05.012_bib63) 2012; 3
Angelidis (10.1016/j.devcel.2020.05.012_bib1) 2019; 10
Schaum (10.1016/j.devcel.2020.05.012_bib104) 2019
Zang (10.1016/j.devcel.2020.05.012_bib140) 2020
Baumgartner (10.1016/j.devcel.2020.05.012_bib5) 1997; 155
Butler (10.1016/j.devcel.2020.05.012_bib10) 2011; 71
Plasschaert (10.1016/j.devcel.2020.05.012_bib88) 2018; 560
Jonker (10.1016/j.devcel.2020.05.012_bib51) 2013; 12
Guan (10.1016/j.devcel.2020.05.012_bib39) 2020; 382
Guha (10.1016/j.devcel.2020.05.012_bib40) 2014; 9
Ferrari (10.1016/j.devcel.2020.05.012_bib26) 2007; 33
Reyfman (10.1016/j.devcel.2020.05.012_bib95) 2019; 199
Raudvere (10.1016/j.devcel.2020.05.012_bib91) 2019; 47
Mogensen (10.1016/j.devcel.2020.05.012_bib73) 2001; 65
Remuzzi (10.1016/j.devcel.2020.05.012_bib94) 2020; 395
Voraphani (10.1016/j.devcel.2020.05.012_bib121) 2014; 7
Gruber (10.1016/j.devcel.2020.05.012_bib36) 2006; 35
Sungnak (10.1016/j.devcel.2020.05.012_bib109) 2020
Zhao (10.1016/j.devcel.2020.05.012_bib145) 2020
Kim (10.1016/j.devcel.2020.05.012_bib53) 2015; 2015
Ross (10.1016/j.devcel.2020.05.012_bib98) 2007; 37
Yang (10.1016/j.devcel.2020.05.012_bib135) 2020
Gindele (10.1016/j.devcel.2020.05.012_bib33) 2020; 10
Muus (10.1016/j.devcel.2020.05.012_bib77) 2020
Hu (10.1016/j.devcel.2020.05.012_bib45) 2020
Jiang (10.1016/j.devcel.2020.05.012_bib49) 2018
Shi (10.1016/j.devcel.2020.05.012_bib107) 2020
Yu (10.1016/j.devcel.2020.05.012_bib138) 2014; 5
Nusinow (10.1016/j.devcel.2020.05.012_bib80) 2020; 180
Misra (10.1016/j.devcel.2020.05.012_bib71) 2007; 31
Gantier (10.1016/j.devcel.2020.05.012_bib31) 2007; 18
Crowley (10.1016/j.devcel.2020.05.012_bib20) 2015; 47
Mitchell (10.1016/j.devcel.2020.05.012_bib72) 2013; 8
Cancer Genome Atlas Research Network (10.1016/j.devcel.2020.05.012_bib111) 2013; 45
Chappell (10.1016/j.devcel.2020.05.012_bib13) 2017; 125
Arnson (10.1016/j.devcel.2020.05.012_bib3) 2010; 34
Rey-Parra (10.1016/j.devcel.2020.05.012_bib96) 2012; 90
Rock (10.1016/j.devcel.2020.05.012_bib97) 2010; 3
Vasudevan (10.1016/j.devcel.2020.05.012_bib120) 2020; 52
Hovenberg (10.1016/j.devcel.2020.05.012_bib44) 1996; 318
Rawlins (10.1016/j.devcel.2020.05.012_bib92) 2009; 4
Cruz (10.1016/j.devcel.2020.05.012_bib21) 2019; 20
González-Mariscal (10.1016/j.devcel.2020.05.012_bib35) 2003; 81
10.1016/j.devcel.2020.05.012_bib105
Wölfel (10.1016/j.devcel.2020.05.012_bib128) 2020
Lukassen (10.1016/j.devcel.2020.05.012_bib64) 2020
Menachery (10.1016/j.devcel.2020.05.012_bib69) 2017; 8
Laniado-Laborín (10.1016/j.devcel.2020.05.012_bib57) 2009; 6
Zhou (10.1016/j.devcel.2020.05.012_bib146) 2020; 579
Citrin (10.1016/j.devcel.2020.05.012_bib16) 2013; 105
Chen (10.1016/j.devcel.2020.05.012_bib15)
Goldfarbmuren (10.1016/j.devcel.2020.05.012_bib34) 2019
Wu (10.1016/j.devcel.2020.05.012_bib129)
The Tabula Muris Consortium (10.1016/j.devcel.2020.05.012_bib17) 2020
Li (10.1016/j.devcel.2020.05.012_bib60) 2018; 7
Bertram (10.1016/j.devcel.2020.05.012_bib6) 1981; 283
Patanavanich (10.1016/j.devcel.2020.05.012_bib86) 2020
Xu (10.1016/j.devcel.2020.05.012_bib133) 2020; 26
Kobak (10.1016/j.devcel.2020.05.012_bib54) 2019; 10
Rusinova (10.1016/j.devcel.2020.05.012_bib101) 2013; 41
(10.1016/j.devcel.2020.05.012_bib82) 2004
Nemajerova (10.1016/j.devcel.2020.05.012_bib78) 2016; 30
Lippi (10.1016/j.devcel.2020.05.012_bib62) 2020; 167
Bradbury (10.1016/j.devcel.2020.05.012_bib8) 2015; 518
Gu (10.1016/j.devcel.2020.05.012_bib38) 2014; 50
Imai (10.1016/j.devcel.2020.05.012_bib46) 2005; 436
Gebel (10.1016/j.devcel.2020.05.012_bib32) 2010; 115
Wu (10.1016/j.devcel.2020.05.012_bib131) 2020; 323
Tomita (10.1016/j.devcel.2020.05.012_bib113) 2000; 267
Wiener (10.1016/j.devcel.2020.05.012_bib126) 2007; 101
Chen (10.1016/j.devcel.2020.05.012_bib14) 2020; 130
Crouser (10.1016/j.devcel.2020.05.012_bib19) 2009; 179
Upadhyay (10.1016/j.devcel.2020.05.012_bib119) 2018; 164
Hamming (10.1016/j.devcel.2020.05.012_bib41) 2004; 203
Kasper (10.1016/j.devcel.2020.05.012_bib52) 1995; 103
Thomas (10.1016/j.devcel.2020.05.012_bib112) 1989; 7
Carithers (10.1016/j.devcel.2020.05.012_bib12) 2015; 13
Lee (10.1016/j.devcel.2020.05.012_bib58) 2001; 93
Gan (10.1016/j.devcel.2020.05.012_bib30) 2005; 127
Kuba (10.1016/j.devcel.2020.05.012_bib56) 2005; 11
Farkas (10.1016/j.devcel.2020.05.012_bib25) 2015; 185
Fahy (10.1016/j.devcel.2020.05.012_bib24) 2010; 363
Montoro (10.1016/j.devcel.2020.05.012_bib74) 2018; 560
References_xml – volume: 2
  start-page: e251
  year: 2005
  ident: bib85
  article-title: Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis
  publication-title: PLoS Med.
– volume: 167
  start-page: 105941
  year: 2020
  ident: bib62
  article-title: Chronic obstructive pulmonary disease is associated with severe coronavirus disease 2019 (COVID-19)
  publication-title: Respir. Med.
– volume: 3
  start-page: 342
  year: 2012
  ident: bib63
  article-title: Effects of second hand smoke on airway secretion and mucociliary clearance
  publication-title: Front. Physiol.
– volume: 78
  start-page: 2166
  year: 2006
  end-page: 2171
  ident: bib132
  article-title: Age- and gender-related difference of ACE2 expression in rat lung
  publication-title: Life Sci.
– year: 2020
  ident: bib148
  article-title: SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
  publication-title: Cell
– year: 2020
  ident: bib77
  article-title: Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
  publication-title: bioRxiv
– volume: 483
  start-page: 603
  year: 2012
  end-page: 607
  ident: bib4
  article-title: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
  publication-title: Nature
– volume: 13
  start-page: 311
  year: 2015
  end-page: 319
  ident: bib12
  article-title: A novel approach to high-quality postmortem tissue procurement: the GTEx project
  publication-title: Biopreserv. Biobank.
– volume: 31
  start-page: 429
  year: 2007
  end-page: 440
  ident: bib71
  article-title: Global expression profiles from C57BL/6J and DBA/2J mouse lungs to determine aging-related genes
  publication-title: Physiol. Genomics
– volume: 2015
  start-page: 206937
  year: 2015
  ident: bib53
  article-title: Comprehensive analysis of transcriptome sequencing data in the lung tissues of COPD subjects
  publication-title: Int. J. Genomics
– volume: 95
  start-page: 421
  year: 2020
  end-page: 428
  ident: bib123
  article-title: Epidemiological and clinical features of 125 Hospitalized Patients with COVID-19 in Fuyang, Anhui, China
  publication-title: Int. J. Infect. Dis.
– volume: 382
  start-page: 727
  year: 2020
  end-page: 733
  ident: bib147
  article-title: A novel coronavirus from patients with pneumonia in China, 2019
  publication-title: N. Engl. J. Med.
– volume: 41
  start-page: D1040
  year: 2013
  end-page: D1046
  ident: bib101
  article-title: INTERFEROME v2.0: an updated database of annotated interferon-regulated genes
  publication-title: Nucleic Acids Res.
– volume: 7
  start-page: e36865
  year: 2018
  ident: bib60
  article-title: Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
  publication-title: eLife
– volume: 382
  start-page: 1708
  year: 2020
  end-page: 1720
  ident: bib39
  article-title: Clinical characteristics of coronavirus disease 2019 in China
  publication-title: N. Engl. J. Med.
– volume: 8
  start-page: 2232
  year: 2016
  end-page: 2252
  ident: bib108
  article-title: Global gene profiling of aging lungs in Atp8b1 mutant mice
  publication-title: Aging (Albany, NY)
– volume: 127
  start-page: 558
  year: 2005
  end-page: 564
  ident: bib30
  article-title: The interactions Between cigarette smoking and reduced lung function on systemic inflammation
  publication-title: Chest
– volume: 560
  start-page: 319
  year: 2018
  end-page: 324
  ident: bib74
  article-title: A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
  publication-title: Nature
– volume: 37
  start-page: 169
  year: 2007
  end-page: 185
  ident: bib98
  article-title: Transcriptional profiling of mucociliary differentiation in human airway epithelial cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 33
  start-page: 284
  year: 2007
  end-page: 293
  ident: bib26
  article-title: Nicotine modulates the renin-angiotensin system of cultured neurons and glial cells from cardiovascular brain areas of Wistar Kyoto and spontaneously hypertensive rats
  publication-title: J. Mol. Neurosci.
– year: 2020
  ident: bib11
  article-title: Tobacco-use disparity in gene expression of ACE2, the receptor of 2019-nCov
– volume: 103
  start-page: 281
  year: 1995
  end-page: 286
  ident: bib52
  article-title: Distribution of E-cadherin and Ep-CAM in the human lung during development and after injury
  publication-title: Histochem. Cell Biol.
– volume: 180
  start-page: 387
  year: 2020
  end-page: 402.e16
  ident: bib80
  article-title: Quantitative proteomics of the cancer cell line encyclopedia
  publication-title: Cell
– volume: 323
  start-page: 1239
  year: 2020
  end-page: 1242
  ident: bib131
  article-title: Characteristics of and important lessons from the coronavirus disease 2019 (COVID-19) outbreak in China: summary of a report of 72 314 cases from the Chinese center for disease control and prevention
  publication-title: JAMA
– year: 2020
  ident: bib15
  article-title: Asians do not exhibit elevated expression or unique genetic polymorphisms for ACE2, the cell-entry receptor of SARS-CoV-2
– volume: 71
  start-page: 2572
  year: 2011
  end-page: 2581
  ident: bib10
  article-title: Modulation of cystatin A expression in human airway epithelium related to genotype, smoking, COPD, and lung cancer
  publication-title: Cancer Res
– volume: 122
  start-page: 265-21
  year: 1980
  ident: bib18
  article-title: Morphologic and morphometric effects of prolonged cigarette smoking on the small airways
  publication-title: Am. Rev. Respir. Dis.
– volume: 93
  start-page: 1081
  year: 2001
  end-page: 1088
  ident: bib58
  article-title: Long-term impact of smoking on lung epithelial proliferation in current and former smokers
  publication-title: J. Natl. Cancer Inst.
– year: 2020
  ident: bib145
  article-title: Single-cell RNA expression profiling of ACE2, the putative receptor of Wuhan 2019-nCov
  publication-title: bioRxiv
– volume: 86
  start-page: 5422
  year: 2012
  end-page: 5436
  ident: bib47
  article-title: Plasticity and virus specificity of the airway epithelial cell immune response during respiratory virus infection
  publication-title: J. Virol.
– volume: 55
  start-page: 2000688
  year: 2020
  ident: bib59
  article-title: ACE-2 expression in the small airway epithelia of smokers and COPD patients: implications for COVID-19
  publication-title: Eur. Respir. J.
– volume: 18
  start-page: 363
  year: 2007
  end-page: 371
  ident: bib31
  article-title: The response of mammalian cells to double-stranded RNA
  publication-title: Cytokine Growth Factor Rev
– volume: 15
  start-page: S126
  year: 2018
  end-page: S127
  ident: bib139
  article-title: Nicotine downregulates the compensatory angiotensin-converting enzyme 2/angiotensin Type 2 receptor of the renin–angiotensin system
  publication-title: Annals ATS
– year: 2020
  ident: bib144
  article-title: Incidence, clinical characteristics and prognostic factor of patients with COVID-19: a systematic review and meta-analysis
  publication-title: MedRxiv
– volume: 65
  start-page: 131
  year: 2001
  end-page: 150
  ident: bib73
  article-title: Molecular pathways in virus-induced cytokine production
  publication-title: Microbiol. Mol. Biol. Rev.
– year: 2020
  ident: bib86
  article-title: Smoking is associated with COVID-19 progression: a meta-analysis
  publication-title: MedRxiv
– volume: 34
  start-page: J258
  year: 2010
  end-page: J265
  ident: bib3
  article-title: Effects of tobacco smoke on immunity, inflammation and autoimmunity
  publication-title: J. Autoimmun.
– year: 2004
  ident: bib82
  article-title: The Health Consequences of Smoking: A Report of the Surgeon General
– start-page: 105954
  year: 2020
  ident: bib141
  article-title: The cytokine release syndrome (CRS) of severe COVID-19 and interleukin-6 receptor (IL-6R) antagonist tocilizumab may be the key to reduce the mortality
  publication-title: Int. J. Antimicrob. Agents
– year: 2020
  ident: bib83
  article-title: Total confirmed deaths due to COVID-19
– year: 2020
  ident: bib7
  article-title: Decrease in ACE2 mRNA expression in aged mouse lung
  publication-title: bioRxiv
– volume: 5
  start-page: 3230
  year: 2014
  ident: bib138
  article-title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  publication-title: Nat. Commun.
– volume: 203
  start-page: 622
  year: 2004
  end-page: 630
  ident: bib22
  article-title: Organ distribution of severe acute respiratory syndrome (SARS) associated coronavirus (SARS-CoV) in SARS patients: implications for pathogenesis and virus transmission pathways
  publication-title: J. Pathol.
– volume: 12
  start-page: 901
  year: 2013
  end-page: 909
  ident: bib51
  article-title: Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs
  publication-title: Aging Cell
– volume: 49
  start-page: 384
  year: 2013
  end-page: 395
  ident: bib66
  article-title: Changes in microRNA and mRNA expression with differentiation of human bronchial epithelial cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 9
  start-page: e88848
  year: 2014
  ident: bib40
  article-title: Analysis of Notch signaling-dependent gene expression in developing airways reveals diversity of Clara cells
  publication-title: PLoS One
– volume: 4
  start-page: e131597
  year: 2019
  ident: bib68
  article-title: Transcriptional regulatory model of fibrosis progression in the human lung
  publication-title: JCI Insight
– volume: 363
  start-page: 2233
  year: 2010
  end-page: 2247
  ident: bib24
  article-title: Airway mucus function and dysfunction
  publication-title: N. Engl. J. Med.
– volume: 81
  start-page: 1
  year: 2003
  end-page: 44
  ident: bib35
  article-title: Tight junction proteins
  publication-title: Prog. Biophys. Mol. Biol.
– year: 2020
  ident: bib118
  article-title: DmitryUlyanov/Multicore-TSNE
– volume: 283
  start-page: 1567
  year: 1981
  end-page: 1569
  ident: bib6
  article-title: Recovery of bronchial epithelium on stopping smoking
  publication-title: Br. Med. J. (Clin. Res. Ed.)
– volume: 518
  start-page: 27
  year: 2015
  end-page: 29
  ident: bib8
  article-title: Reproducibility: standardize antibodies used in research
  publication-title: Nature
– volume: 26
  start-page: 502
  year: 2020
  end-page: 505
  ident: bib133
  article-title: Characteristics of pediatric SARS-CoV-2 infection and potential evidence for persistent fecal viral shedding
  publication-title: Nat. Med.
– volume: 8
  start-page: e69374
  year: 2013
  ident: bib72
  article-title: A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses
  publication-title: PLoS One
– volume: 267
  start-page: 870
  year: 2000
  end-page: 874
  ident: bib113
  article-title: Coordinate recruitment of E-cadherin and ALCAM to cell–cell contacts by α-catenin
  publication-title: Biochem. Biophys. Res. Commun.
– volume: 35
  start-page: 65
  year: 2006
  end-page: 71
  ident: bib36
  article-title: Human lung project: evaluating variance of gene expression in the human lung
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 11
  start-page: 875
  year: 2005
  end-page: 879
  ident: bib56
  article-title: A crucial role of angiotensin converting enzyme 2 (ACE2) in SARS coronavirus–induced lung injury
  publication-title: Nat. Med.
– start-page: 1
  year: 2020
  end-page: 7
  ident: bib109
  article-title: SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
  publication-title: Nat. Med.
– volume: 15
  start-page: S143
  year: 2018
  end-page: S148
  ident: bib124
  article-title: Airway epithelial differentiation and mucociliary clearance
  publication-title: Ann. Am. Thorac. Soc.
– volume: 3
  start-page: 545
  year: 2010
  end-page: 556
  ident: bib97
  article-title: Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling
  publication-title: Dis. Models Mech.
– volume: 199
  start-page: 1517
  year: 2019
  end-page: 1536
  ident: bib95
  article-title: Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 15
  start-page: 9
  year: 2014
  ident: bib122
  article-title: dsRNA-induced changes in gene expression profiles of primary nasal and bronchial epithelial cells from patients with asthma, rhinitis and controls
  publication-title: Respir. Res.
– volume: 10
  start-page: 963
  year: 2019
  ident: bib1
  article-title: An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics
  publication-title: Nat. Commun.
– volume: 185
  start-page: 2206
  year: 2015
  end-page: 2218
  ident: bib25
  article-title: HNF4α regulates Claudin-7 protein expression during intestinal epithelial differentiation
  publication-title: Am. J. Pathol.
– volume: 45
  start-page: 1113
  year: 2013
  end-page: 1120
  ident: bib111
  article-title: The cancer genome atlas pan-cancer analysis project
  publication-title: Nat. Genet.
– start-page: 1
  year: 2020
  end-page: 10
  ident: bib142
  article-title: CT features of SARS-CoV-2 pneumonia according to clinical presentation: a retrospective analysis of 120 consecutive patients from Wuhan city
  publication-title: Eur. Radiol.
– year: 2020
  ident: bib135
  article-title: Exuberant elevation of IP-10, MCP-3 and IL-1RA during SARS-CoV-2 infection is associated with disease severity and fatal outcome
  publication-title: MedRxiv
– volume: 7
  start-page: 44232
  year: 2017
  ident: bib76
  article-title: Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue
  publication-title: Sci. Rep.
– volume: 579
  start-page: 270
  year: 2020
  end-page: 273
  ident: bib146
  article-title: A pneumonia outbreak associated with a new coronavirus of probable bat origin
  publication-title: Nature
– volume: 130
  start-page: 2620
  year: 2020
  end-page: 2629
  ident: bib14
  article-title: Clinical and immunological features of severe and moderate coronavirus disease 2019
  publication-title: J. Clin. Invest.
– volume: 318
  start-page: 319
  year: 1996
  end-page: 324
  ident: bib44
  article-title: Different mucins are produced by the surface epithelium and the submucosa in human trachea: identification of MUC5AC as a major mucin from the goblet cells
  publication-title: Biochem. J.
– volume: 125
  start-page: 107006
  year: 2017
  ident: bib13
  article-title: Variation in DNA-damage responses to an inhalational carcinogen (1,3-butadiene) in relation to strain-specific differences in chromatin accessibility and gene transcription profiles in C57BL/6J and CAST/EiJ mice
  publication-title: Environ. Health Perspect.
– volume: 8
  year: 2017
  ident: bib69
  article-title: MERS-CoV accessory ORFs play key role for infection and pathogenesis
  publication-title: mBio
– volume: 47
  start-page: W191
  year: 2019
  end-page: W198
  ident: bib91
  article-title: g:profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
  publication-title: Nucleic Acids Res.
– volume: 2
  start-page: 260
  year: 2009
  end-page: 272
  ident: bib115
  article-title: Trachea epithelium as a “canary” for cigarette smoking-induced biologic phenotype of the small airway epithelium
  publication-title: Clin. Transl. Sci.
– year: 2020
  ident: bib89
  article-title: Epidemiological and clinical features of 2019-nCoV acute respiratory disease cases in Chongqing Municipality, China: a retrospective, descriptive, multiple-center study
  publication-title: MedRxiv
– volume: 4
  start-page: 525
  year: 2009
  end-page: 534
  ident: bib92
  article-title: The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium
  publication-title: Cell Stem Cell
– volume: 313
  start-page: L733
  year: 2017
  end-page: L740
  ident: bib2
  article-title: LungMAP: the molecular atlas of lung development program
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
– volume: 9
  start-page: 841
  year: 2020
  ident: bib9
  article-title: Smoking upregulates angiotensin-converting enzyme-2 receptor: a potential adhesion site for novel coronavirus SARS-CoV-2 (Covid-19)
  publication-title: J. Clin. Med.
– volume: 20
  start-page: 152
  year: 2019
  ident: bib21
  article-title: Multi-level immune response network in mild-moderate chronic obstructive pulmonary disease (COPD)
  publication-title: Respir. Res.
– volume: 155
  start-page: 242
  year: 1997
  end-page: 248
  ident: bib5
  article-title: Cigarette smoking: a risk factor for idiopathic pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 115
  start-page: 238
  year: 2010
  end-page: 252
  ident: bib32
  article-title: The transcriptome of Nrf2-/- mice provides evidence for impaired cell cycle progression in the development of cigarette smoke-induced emphysematous changes
  publication-title: Toxicol. Sci.
– volume: 48
  start-page: D77
  year: 2020
  end-page: D83
  ident: bib84
  article-title: Expression atlas update: from tissues to single cells
  publication-title: Nucleic Acids Res.
– year: 2020
  ident: bib128
  article-title: Virological assessment of hospitalized patients with COVID-2019
  publication-title: Nature
– volume: 7
  start-page: 339
  year: 1989
  end-page: 369
  ident: bib112
  article-title: The leukocyte common antigen family
  publication-title: Annu. Rev. Immunol.
– volume: 40
  start-page: 1445
  year: 2008
  end-page: 1453
  ident: bib137
  article-title: Foxj1 transcription factors are master regulators of the motile ciliogenic program
  publication-title: Nat. Genet.
– year: 2020
  ident: bib100
  article-title: Likelihood of survival of coronavirus disease 2019
  publication-title: Lancet Infect. Dis.
– volume: 164
  start-page: 861
  year: 2004
  end-page: 871
  ident: bib103
  article-title: CD208/dendritic cell-lysosomal associated membrane protein is a marker of normal and transformed Type II pneumocytes
  publication-title: Am. J. Pathol.
– volume: 53
  start-page: 1
  year: 2015
  end-page: 7
  ident: bib125
  article-title: Alveolar development and disease
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 130
  start-page: 2202
  year: 2020
  end-page: 2205
  ident: bib87
  article-title: SARS-CoV-2: a storm is raging
  publication-title: J. Clin. Invest.
– volume: 7
  start-page: 1175
  year: 2014
  end-page: 1185
  ident: bib121
  article-title: An airway epithelial iNOS–DUOX2–thyroid peroxidase metabolome drives Th1/Th2 nitrative stress in human severe asthma
  publication-title: Mucosal Immunol.
– volume: 50
  start-page: 637
  year: 2014
  end-page: 646
  ident: bib38
  article-title: Chemosensory functions for pulmonary neuroendocrine cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
– volume: 436
  start-page: 112
  year: 2005
  end-page: 116
  ident: bib46
  article-title: Angiotensin-converting enzyme 2 protects from severe acute lung failure
  publication-title: Nature
– year: 2020
  ident: bib99
  article-title: Interleukin-6 blockade for severe COVID-19
  publication-title: MedRxiv
– year: 2020
  ident: bib140
  article-title: TMPRSS2 and TMPRSS4 mediate SARS-CoV-2 infection of human small intestinal enterocytes
  publication-title: bioRxiv
– volume: 25
  start-page: 336
  year: 2006
  end-page: 345
  ident: bib42
  article-title: Strain-dependent pulmonary gene expression profiles of a cystic fibrosis mouse model
  publication-title: Physiol. Genomics
– volume: 196
  start-page: 340
  year: 2017
  end-page: 352
  ident: bib134
  article-title: Smoking-dependent distal-to-proximal repatterning of the adult human small airway epithelium
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 23
  start-page: 117
  year: 2009
  end-page: 122
  ident: bib110
  article-title: Cigarette smoke exposure impairs respiratory epithelial ciliogenesis
  publication-title: Am J Rhinol Allergy
– volume: 579
  start-page: 265
  year: 2020
  end-page: 269
  ident: bib130
  article-title: A new coronavirus associated with human respiratory disease in China
  publication-title: Nature
– volume: 11
  start-page: 413
  year: 2014
  end-page: 426
  ident: bib50
  article-title: Angiotensin-converting enzyme 2 and angiotensin 1–7: novel therapeutic targets
  publication-title: Nat. Rev. Cardiol.
– volume: 48
  start-page: 673
  year: 2010
  end-page: 678
  ident: bib75
  article-title: Generation of mice with a conditional and reporter allele for Tmem100
  publication-title: Genesis
– volume: 19
  start-page: 15
  year: 2018
  ident: bib127
  article-title: SCANPY: large-scale single-cell gene expression data analysis
  publication-title: Genome Biol.
– volume: 105
  start-page: 1474
  year: 2013
  end-page: 1484
  ident: bib16
  article-title: Role of type II pneumocyte senescence in radiation-induced lung fibrosis
  publication-title: J. Natl. Cancer Inst.
– volume: 30
  start-page: 207
  year: 2002
  end-page: 210
  ident: bib23
  article-title: Gene expression omnibus: NCBI gene expression and hybridization array data repository
  publication-title: Nucleic Acids Res
– volume: 79
  start-page: 14614
  year: 2005
  end-page: 14621
  ident: bib48
  article-title: ACE2 receptor expression and severe acute respiratory syndrome coronavirus infection depend on differentiation of human airway epithelia
  publication-title: J. Virol.
– year: 2020
  ident: bib79
  article-title: A guide to the quantitative proteomic profiles of the cancer cell line encyclopedia
  publication-title: bioRxiv
– volume: 52
  start-page: 413
  year: 2020
  end-page: 428.e6
  ident: bib120
  article-title: Single-chromosomal gains can function as metastasis suppressors and promoters in colon cancer
  publication-title: Dev. Cell
– volume: 426
  start-page: 450
  year: 2003
  end-page: 454
  ident: bib61
  article-title: Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus
  publication-title: Nature
– year: 2020
  ident: bib90
  article-title: In Italy, coronavirus takes a higher toll on men
  publication-title: The New York Times
– start-page: e105114
  year: 2020
  ident: bib64
  article-title: SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells
  publication-title: EMBO J.
– volume: 10
  start-page: 5416
  year: 2019
  ident: bib54
  article-title: The art of using t-SNE for single-cell transcriptomics
  publication-title: Nat. Commun.
– volume: 30
  start-page: 1300
  year: 2016
  end-page: 1312
  ident: bib78
  article-title: TAp73 is a central transcriptional regulator of airway multiciliogenesis
  publication-title: Genes Dev.
– volume: 47
  start-page: 353
  year: 2015
  end-page: 360
  ident: bib20
  article-title: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance
  publication-title: Nat. Genet.
– volume: 179
  start-page: 929
  year: 2009
  end-page: 938
  ident: bib19
  article-title: Gene expression profiling identifies MMP-12 and ADAMDEC1 as potential pathogenic mediators of pulmonary sarcoidosis
  publication-title: Am. J. Respir. Crit. Care Med.
– year: 2020
  ident: bib65
  article-title: Characteristics of patients with COVID-19 during epidemic ongoing outbreak in Wuhan, China
  publication-title: MedRxiv
– volume: 315
  start-page: R895
  year: 2018
  end-page: R906
  ident: bib81
  article-title: Nicotine and the renin-angiotensin system
  publication-title: Am. J. Physiol. Regul. Integr. Comp. Physiol.
– volume: 6
  start-page: e27041
  year: 2017
  ident: bib93
  article-title: The human cell atlas
  publication-title: eLife
– volume: 35
  start-page: 151
  year: 2008
  end-page: 160
  ident: bib27
  article-title: Differential regulation of the renin-angiotensin system by nicotine in WKY and SHR glia
  publication-title: J. Mol. Neurosci.
– volume: 181
  start-page: 271
  year: 2020
  end-page: 280.e8
  ident: bib43
  article-title: SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor
  publication-title: Cell
– volume: 117
  start-page: 1108
  year: 2009
  end-page: 1115
  ident: bib55
  article-title: Chronic exposure to arsenic in the drinking water alters the expression of immune response genes in mouse lung
  publication-title: Environ. Health Perspect.
– volume: 10
  start-page: 6257
  year: 2020
  ident: bib33
  article-title: Intermittent exposure to whole cigarette smoke alters the differentiation of primary small airway epithelial cells in the air-liquid interface culture
  publication-title: Sci. Rep.
– year: 2020
  ident: bib143
  article-title: The impact of COPD and smoking history on the severity of Covid-19: A systemic review and meta-analysis
  publication-title: J. Med. Virol.
– volume: 161
  start-page: 1016
  year: 2000
  end-page: 1021
  ident: bib102
  article-title: Goblet cell hyperplasia and epithelial inflammation in peripheral airways of smokers with both symptoms of chronic bronchitis and chronic airflow limitation
  publication-title: Am. J. Respir. Crit. Care Med.
– volume: 139
  start-page: 1255
  year: 2009
  end-page: 1267
  ident: bib106
  article-title: A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection
  publication-title: Cell
– volume: 41
  start-page: 1468
  year: 2015
  end-page: 1477
  ident: bib136
  article-title: Role of angiotensin-converting enzyme (ACE) and ACE2 in a rat model of smoke inhalation induced acute respiratory distress syndrome
  publication-title: Burns
– start-page: 91
  year: 2018
  end-page: 109
  ident: bib49
  article-title: Air–liquid interface culture of human and mouse airway epithelial cells
  publication-title: Lung Innate Immunity and Inflammation: Methods and Protocols
– volume: 81
  start-page: 813
  year: 2007
  end-page: 821
  ident: bib67
  article-title: Lethal infection of K18-hACE2 mice infected with severe acute respiratory syndrome coronavirus
  publication-title: J. Virol.
– year: 2020
  ident: bib129
  article-title: Single-cell RNA expression profiling shows that ACE2, the putative receptor of Wuhan 2019-nCoV, has significant expression in the nasal, mouth, lung and colon tissues, and tends to be co-expressed with HLA-DRB1 in the four tissues
– volume: 202
  start-page: 120
  year: 2015
  end-page: 134
  ident: bib70
  article-title: Host cell proteases: critical determinants of coronavirus tropism and pathogenesis
  publication-title: Virus Res.
– year: 2019
  ident: bib104
  article-title: The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude
  publication-title: bioRxiv
– volume: 395
  start-page: 1225
  year: 2020
  end-page: 1228
  ident: bib94
  article-title: COVID-19 and Italy: what next?
  publication-title: Lancet
– reference: Seabold, S., and Perktold, J. (2010). Statsmodels: econometric and statistical modeling with Python Proc. of the 9th Python in science conf. (SCIPY 2010), pp. 92–96.
– volume: 6
  start-page: 209
  year: 2009
  end-page: 224
  ident: bib57
  article-title: Smoking and chronic obstructive pulmonary disease (COPD). Parallel epidemics of the 21 century
  publication-title: Int. J. Environ. Res. Public Health
– year: 2020
  ident: bib107
  article-title: Immunopathological characteristics of coronavirus disease 2019 cases in Guangzhou, China
  publication-title: MedRxiv
– volume: 45
  start-page: 580
  year: 2013
  end-page: 585
  ident: bib37
  article-title: The genotype-tissue expression (GTEx) project
  publication-title: Nat. Genet.
– year: 2016
  ident: bib28
  article-title: Broad GDAC firehose
– volume: 28
  start-page: 1248
  year: 2010
  end-page: 1250
  ident: bib117
  article-title: Towards a knowledge-based human protein atlas
  publication-title: Nat. Biotechnol.
– year: 2020
  ident: bib114
  article-title: A molecular cell atlas of the human lung from single cell RNA sequencing
  publication-title: bioRxiv
– volume: 101
  start-page: 1278
  year: 2007
  end-page: 1291
  ident: bib126
  article-title: Angiotensin converting enzyme 2 is primarily epithelial and is developmentally regulated in the mouse lung
  publication-title: J. Cell. Biochem.
– volume: 560
  start-page: 377
  year: 2018
  end-page: 381
  ident: bib88
  article-title: A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
  publication-title: Nature
– volume: 90
  start-page: 637
  year: 2012
  end-page: 647
  ident: bib96
  article-title: Angiotensin converting enzyme 2 abrogates bleomycin-induced lung injury
  publication-title: J. Mol. Med.
– year: 2020
  ident: bib17
  article-title: A single cell Transcriptomic atlas characterizes aging tissues in the mouse
  publication-title: bioRxiv
– volume: 203
  start-page: 631
  year: 2004
  end-page: 637
  ident: bib41
  article-title: Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis
  publication-title: J. Pathol.
– volume: 164
  start-page: 21
  year: 2018
  end-page: 30
  ident: bib119
  article-title: Air-liquid interface: relevant in vitro models for investigating air pollutant-induced pulmonary toxicity
  publication-title: Toxicol. Sci.
– year: 2020
  ident: bib45
  article-title: Risk factors associated with clinical outcomes in 323 COVID-19 patients in Wuhan, China
  publication-title: medRxiv
– volume: 347
  start-page: 1260419
  year: 2015
  ident: bib116
  article-title: Proteomics. Tissue-based map of the human proteome
  publication-title: Science
– volume: 5
  start-page: 763
  year: 2008
  end-page: 766
  ident: bib29
  article-title: Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function
  publication-title: Proc. Am. Thorac. Soc.
– year: 2019
  ident: bib34
  article-title: Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium
  publication-title: bioRxiv
– start-page: 91
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib49
  article-title: Air–liquid interface culture of human and mouse airway epithelial cells
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib100
  article-title: Likelihood of survival of coronavirus disease 2019
  publication-title: Lancet Infect. Dis.
  doi: 10.1016/S1473-3099(20)30257-7
– volume: 426
  start-page: 450
  year: 2003
  ident: 10.1016/j.devcel.2020.05.012_bib61
  article-title: Angiotensin-converting enzyme 2 is a functional receptor for the SARS coronavirus
  publication-title: Nature
  doi: 10.1038/nature02145
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib135
  article-title: Exuberant elevation of IP-10, MCP-3 and IL-1RA during SARS-CoV-2 infection is associated with disease severity and fatal outcome
  publication-title: MedRxiv
– volume: 95
  start-page: 421
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib123
  article-title: Epidemiological and clinical features of 125 Hospitalized Patients with COVID-19 in Fuyang, Anhui, China
  publication-title: Int. J. Infect. Dis.
  doi: 10.1016/j.ijid.2020.03.070
– volume: 33
  start-page: 284
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib26
  article-title: Nicotine modulates the renin-angiotensin system of cultured neurons and glial cells from cardiovascular brain areas of Wistar Kyoto and spontaneously hypertensive rats
  publication-title: J. Mol. Neurosci.
  doi: 10.1007/s12031-007-9006-x
– volume: 130
  start-page: 2202
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib87
  article-title: SARS-CoV-2: a storm is raging
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI137647
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib90
  article-title: In Italy, coronavirus takes a higher toll on men
  publication-title: The New York Times
– volume: 122
  start-page: 265-21
  year: 1980
  ident: 10.1016/j.devcel.2020.05.012_bib18
  article-title: Morphologic and morphometric effects of prolonged cigarette smoking on the small airways
  publication-title: Am. Rev. Respir. Dis.
– volume: 6
  start-page: 209
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib57
  article-title: Smoking and chronic obstructive pulmonary disease (COPD). Parallel epidemics of the 21 century
  publication-title: Int. J. Environ. Res. Public Health
  doi: 10.3390/ijerph6010209
– volume: 52
  start-page: 413
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib120
  article-title: Single-chromosomal gains can function as metastasis suppressors and promoters in colon cancer
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2020.01.034
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib79
  article-title: A guide to the quantitative proteomic profiles of the cancer cell line encyclopedia
  publication-title: bioRxiv
– volume: 7
  start-page: 339
  year: 1989
  ident: 10.1016/j.devcel.2020.05.012_bib112
  article-title: The leukocyte common antigen family
  publication-title: Annu. Rev. Immunol.
  doi: 10.1146/annurev.iy.07.040189.002011
– volume: 347
  start-page: 1260419
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib116
  article-title: Proteomics. Tissue-based map of the human proteome
  publication-title: Science
  doi: 10.1126/science.1260419
– volume: 130
  start-page: 2620
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib14
  article-title: Clinical and immunological features of severe and moderate coronavirus disease 2019
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI137244
– volume: 9
  start-page: 841
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib9
  article-title: Smoking upregulates angiotensin-converting enzyme-2 receptor: a potential adhesion site for novel coronavirus SARS-CoV-2 (Covid-19)
  publication-title: J. Clin. Med.
  doi: 10.3390/jcm9030841
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib143
  article-title: The impact of COPD and smoking history on the severity of Covid-19: A systemic review and meta-analysis
  publication-title: J. Med. Virol.
  doi: 10.1002/jmv.25889
– volume: 115
  start-page: 238
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib32
  article-title: The transcriptome of Nrf2-/- mice provides evidence for impaired cell cycle progression in the development of cigarette smoke-induced emphysematous changes
  publication-title: Toxicol. Sci.
  doi: 10.1093/toxsci/kfq039
– volume: 65
  start-page: 131
  year: 2001
  ident: 10.1016/j.devcel.2020.05.012_bib73
  article-title: Molecular pathways in virus-induced cytokine production
  publication-title: Microbiol. Mol. Biol. Rev.
  doi: 10.1128/MMBR.65.1.131-150.2001
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib148
  article-title: SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
  publication-title: Cell
  doi: 10.1016/j.cell.2020.04.035
– volume: 125
  start-page: 107006
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib13
  article-title: Variation in DNA-damage responses to an inhalational carcinogen (1,3-butadiene) in relation to strain-specific differences in chromatin accessibility and gene transcription profiles in C57BL/6J and CAST/EiJ mice
  publication-title: Environ. Health Perspect.
  doi: 10.1289/EHP1937
– volume: 6
  start-page: e27041
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib93
  article-title: The human cell atlas
  publication-title: eLife
  doi: 10.7554/eLife.27041
– start-page: 1
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib109
  article-title: SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
  publication-title: Nat. Med.
– volume: 313
  start-page: L733
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib2
  article-title: LungMAP: the molecular atlas of lung development program
  publication-title: Am. J. Physiol. Lung Cell. Mol. Physiol.
  doi: 10.1152/ajplung.00139.2017
– volume: 4
  start-page: e131597
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib68
  article-title: Transcriptional regulatory model of fibrosis progression in the human lung
  publication-title: JCI Insight
  doi: 10.1172/jci.insight.131597
– volume: 164
  start-page: 861
  year: 2004
  ident: 10.1016/j.devcel.2020.05.012_bib103
  article-title: CD208/dendritic cell-lysosomal associated membrane protein is a marker of normal and transformed Type II pneumocytes
  publication-title: Am. J. Pathol.
  doi: 10.1016/S0002-9440(10)63174-4
– year: 2016
  ident: 10.1016/j.devcel.2020.05.012_bib28
– volume: 41
  start-page: D1040
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib101
  article-title: INTERFEROME v2.0: an updated database of annotated interferon-regulated genes
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks1215
– volume: 25
  start-page: 336
  year: 2006
  ident: 10.1016/j.devcel.2020.05.012_bib42
  article-title: Strain-dependent pulmonary gene expression profiles of a cystic fibrosis mouse model
  publication-title: Physiol. Genomics
  doi: 10.1152/physiolgenomics.00208.2005
– volume: 180
  start-page: 387
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib80
  article-title: Quantitative proteomics of the cancer cell line encyclopedia
  publication-title: Cell
  doi: 10.1016/j.cell.2019.12.023
– volume: 47
  start-page: 353
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib20
  article-title: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3222
– volume: 10
  start-page: 5416
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib54
  article-title: The art of using t-SNE for single-cell transcriptomics
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-13056-x
– volume: 164
  start-page: 21
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib119
  article-title: Air-liquid interface: relevant in vitro models for investigating air pollutant-induced pulmonary toxicity
  publication-title: Toxicol. Sci.
  doi: 10.1093/toxsci/kfy053
– volume: 105
  start-page: 1474
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib16
  article-title: Role of type II pneumocyte senescence in radiation-induced lung fibrosis
  publication-title: J. Natl. Cancer Inst.
  doi: 10.1093/jnci/djt212
– volume: 101
  start-page: 1278
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib126
  article-title: Angiotensin converting enzyme 2 is primarily epithelial and is developmentally regulated in the mouse lung
  publication-title: J. Cell. Biochem.
  doi: 10.1002/jcb.21248
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib65
  article-title: Characteristics of patients with COVID-19 during epidemic ongoing outbreak in Wuhan, China
  publication-title: MedRxiv
– volume: 202
  start-page: 120
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib70
  article-title: Host cell proteases: critical determinants of coronavirus tropism and pathogenesis
  publication-title: Virus Res.
  doi: 10.1016/j.virusres.2014.11.021
– volume: 5
  start-page: 3230
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib138
  article-title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms4230
– ident: 10.1016/j.devcel.2020.05.012_bib129
– volume: 203
  start-page: 631
  year: 2004
  ident: 10.1016/j.devcel.2020.05.012_bib41
  article-title: Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis
  publication-title: J. Pathol.
  doi: 10.1002/path.1570
– year: 2004
  ident: 10.1016/j.devcel.2020.05.012_bib82
– volume: 283
  start-page: 1567
  year: 1981
  ident: 10.1016/j.devcel.2020.05.012_bib6
  article-title: Recovery of bronchial epithelium on stopping smoking
  publication-title: Br. Med. J. (Clin. Res. Ed.)
  doi: 10.1136/bmj.283.6306.1567
– volume: 93
  start-page: 1081
  year: 2001
  ident: 10.1016/j.devcel.2020.05.012_bib58
  article-title: Long-term impact of smoking on lung epithelial proliferation in current and former smokers
  publication-title: J. Natl. Cancer Inst.
  doi: 10.1093/jnci/93.14.1081
– volume: 10
  start-page: 6257
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib33
  article-title: Intermittent exposure to whole cigarette smoke alters the differentiation of primary small airway epithelial cells in the air-liquid interface culture
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-020-63345-5
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib144
  article-title: Incidence, clinical characteristics and prognostic factor of patients with COVID-19: a systematic review and meta-analysis
  publication-title: MedRxiv
– volume: 48
  start-page: 673
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib75
  article-title: Generation of mice with a conditional and reporter allele for Tmem100
  publication-title: Genesis
  doi: 10.1002/dvg.20674
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib89
  article-title: Epidemiological and clinical features of 2019-nCoV acute respiratory disease cases in Chongqing Municipality, China: a retrospective, descriptive, multiple-center study
  publication-title: MedRxiv
– volume: 579
  start-page: 270
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib146
  article-title: A pneumonia outbreak associated with a new coronavirus of probable bat origin
  publication-title: Nature
  doi: 10.1038/s41586-020-2012-7
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib17
  article-title: A single cell Transcriptomic atlas characterizes aging tissues in the mouse
  publication-title: bioRxiv
– year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib34
  article-title: Dissecting the cellular specificity of smoking effects and reconstructing lineages in the human airway epithelium
  publication-title: bioRxiv
– volume: 78
  start-page: 2166
  year: 2006
  ident: 10.1016/j.devcel.2020.05.012_bib132
  article-title: Age- and gender-related difference of ACE2 expression in rat lung
  publication-title: Life Sci.
  doi: 10.1016/j.lfs.2005.09.038
– volume: 179
  start-page: 929
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib19
  article-title: Gene expression profiling identifies MMP-12 and ADAMDEC1 as potential pathogenic mediators of pulmonary sarcoidosis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.200803-490OC
– volume: 185
  start-page: 2206
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib25
  article-title: HNF4α regulates Claudin-7 protein expression during intestinal epithelial differentiation
  publication-title: Am. J. Pathol.
  doi: 10.1016/j.ajpath.2015.04.023
– volume: 11
  start-page: 413
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib50
  article-title: Angiotensin-converting enzyme 2 and angiotensin 1–7: novel therapeutic targets
  publication-title: Nat. Rev. Cardiol.
  doi: 10.1038/nrcardio.2014.59
– volume: 31
  start-page: 429
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib71
  article-title: Global expression profiles from C57BL/6J and DBA/2J mouse lungs to determine aging-related genes
  publication-title: Physiol. Genomics
  doi: 10.1152/physiolgenomics.00060.2007
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib145
  article-title: Single-cell RNA expression profiling of ACE2, the putative receptor of Wuhan 2019-nCov
  publication-title: bioRxiv
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib7
  article-title: Decrease in ACE2 mRNA expression in aged mouse lung
  publication-title: bioRxiv
– volume: 10
  start-page: 963
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib1
  article-title: An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-08831-9
– volume: 30
  start-page: 1300
  year: 2016
  ident: 10.1016/j.devcel.2020.05.012_bib78
  article-title: TAp73 is a central transcriptional regulator of airway multiciliogenesis
  publication-title: Genes Dev.
  doi: 10.1101/gad.279836.116
– start-page: 105954
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib141
  article-title: The cytokine release syndrome (CRS) of severe COVID-19 and interleukin-6 receptor (IL-6R) antagonist tocilizumab may be the key to reduce the mortality
  publication-title: Int. J. Antimicrob. Agents
  doi: 10.1016/j.ijantimicag.2020.105954
– volume: 34
  start-page: J258
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib3
  article-title: Effects of tobacco smoke on immunity, inflammation and autoimmunity
  publication-title: J. Autoimmun.
  doi: 10.1016/j.jaut.2009.12.003
– volume: 3
  start-page: 342
  year: 2012
  ident: 10.1016/j.devcel.2020.05.012_bib63
  article-title: Effects of second hand smoke on airway secretion and mucociliary clearance
  publication-title: Front. Physiol.
  doi: 10.3389/fphys.2012.00342
– volume: 81
  start-page: 1
  year: 2003
  ident: 10.1016/j.devcel.2020.05.012_bib35
  article-title: Tight junction proteins
  publication-title: Prog. Biophys. Mol. Biol.
  doi: 10.1016/S0079-6107(02)00037-8
– volume: 8
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib69
  article-title: MERS-CoV accessory ORFs play key role for infection and pathogenesis
  publication-title: mBio
  doi: 10.1128/mBio.00665-17
– volume: 2
  start-page: e251
  year: 2005
  ident: 10.1016/j.devcel.2020.05.012_bib85
  article-title: Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis
  publication-title: PLoS Med.
  doi: 10.1371/journal.pmed.0020251
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib140
  article-title: TMPRSS2 and TMPRSS4 mediate SARS-CoV-2 infection of human small intestinal enterocytes
  publication-title: bioRxiv
– volume: 181
  start-page: 271
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib43
  article-title: SARS-CoV-2 cell entry depends on ACE2 and TMPRSS2 and is blocked by a clinically proven protease inhibitor
  publication-title: Cell
  doi: 10.1016/j.cell.2020.02.052
– volume: 2
  start-page: 260
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib115
  article-title: Trachea epithelium as a “canary” for cigarette smoking-induced biologic phenotype of the small airway epithelium
  publication-title: Clin. Transl. Sci.
  doi: 10.1111/j.1752-8062.2009.00129.x
– volume: 518
  start-page: 27
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib8
  article-title: Reproducibility: standardize antibodies used in research
  publication-title: Nature
  doi: 10.1038/518027a
– volume: 15
  start-page: S126
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib139
  article-title: Nicotine downregulates the compensatory angiotensin-converting enzyme 2/angiotensin Type 2 receptor of the renin–angiotensin system
  publication-title: Annals ATS
  doi: 10.1513/AnnalsATS.201706-464MG
– volume: 315
  start-page: R895
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib81
  article-title: Nicotine and the renin-angiotensin system
  publication-title: Am. J. Physiol. Regul. Integr. Comp. Physiol.
  doi: 10.1152/ajpregu.00099.2018
– volume: 203
  start-page: 622
  year: 2004
  ident: 10.1016/j.devcel.2020.05.012_bib22
  article-title: Organ distribution of severe acute respiratory syndrome (SARS) associated coronavirus (SARS-CoV) in SARS patients: implications for pathogenesis and virus transmission pathways
  publication-title: J. Pathol.
  doi: 10.1002/path.1560
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib128
  article-title: Virological assessment of hospitalized patients with COVID-2019
  publication-title: Nature
  doi: 10.1038/s41586-020-2196-x
– volume: 90
  start-page: 637
  year: 2012
  ident: 10.1016/j.devcel.2020.05.012_bib96
  article-title: Angiotensin converting enzyme 2 abrogates bleomycin-induced lung injury
  publication-title: J. Mol. Med.
  doi: 10.1007/s00109-012-0859-2
– volume: 3
  start-page: 545
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib97
  article-title: Airway basal stem cells: a perspective on their roles in epithelial homeostasis and remodeling
  publication-title: Dis. Models Mech.
  doi: 10.1242/dmm.006031
– volume: 13
  start-page: 311
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib12
  article-title: A novel approach to high-quality postmortem tissue procurement: the GTEx project
  publication-title: Biopreserv. Biobank.
  doi: 10.1089/bio.2015.0032
– volume: 37
  start-page: 169
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib98
  article-title: Transcriptional profiling of mucociliary differentiation in human airway epithelial cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2006-0466OC
– year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib104
  article-title: The murine transcriptome reveals global aging nodes with organ-specific phase and amplitude
  publication-title: bioRxiv
– volume: 267
  start-page: 870
  year: 2000
  ident: 10.1016/j.devcel.2020.05.012_bib113
  article-title: Coordinate recruitment of E-cadherin and ALCAM to cell–cell contacts by α-catenin
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1006/bbrc.1999.2040
– volume: 41
  start-page: 1468
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib136
  article-title: Role of angiotensin-converting enzyme (ACE) and ACE2 in a rat model of smoke inhalation induced acute respiratory distress syndrome
  publication-title: Burns
  doi: 10.1016/j.burns.2015.04.010
– volume: 35
  start-page: 151
  year: 2008
  ident: 10.1016/j.devcel.2020.05.012_bib27
  article-title: Differential regulation of the renin-angiotensin system by nicotine in WKY and SHR glia
  publication-title: J. Mol. Neurosci.
  doi: 10.1007/s12031-007-9025-7
– volume: 11
  start-page: 875
  year: 2005
  ident: 10.1016/j.devcel.2020.05.012_bib56
  article-title: A crucial role of angiotensin converting enzyme 2 (ACE2) in SARS coronavirus–induced lung injury
  publication-title: Nat. Med.
  doi: 10.1038/nm1267
– volume: 318
  start-page: 319
  year: 1996
  ident: 10.1016/j.devcel.2020.05.012_bib44
  article-title: Different mucins are produced by the surface epithelium and the submucosa in human trachea: identification of MUC5AC as a major mucin from the goblet cells
  publication-title: Biochem. J.
  doi: 10.1042/bj3180319
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib107
  article-title: Immunopathological characteristics of coronavirus disease 2019 cases in Guangzhou, China
  publication-title: MedRxiv
– volume: 560
  start-page: 319
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib74
  article-title: A revised airway epithelial hierarchy includes CFTR-expressing ionocytes
  publication-title: Nature
  doi: 10.1038/s41586-018-0393-7
– volume: 483
  start-page: 603
  year: 2012
  ident: 10.1016/j.devcel.2020.05.012_bib4
  article-title: The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
  publication-title: Nature
  doi: 10.1038/nature11003
– volume: 40
  start-page: 1445
  year: 2008
  ident: 10.1016/j.devcel.2020.05.012_bib137
  article-title: Foxj1 transcription factors are master regulators of the motile ciliogenic program
  publication-title: Nat. Genet.
  doi: 10.1038/ng.263
– volume: 7
  start-page: 44232
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib76
  article-title: Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue
  publication-title: Sci. Rep.
  doi: 10.1038/srep44232
– volume: 560
  start-page: 377
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib88
  article-title: A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte
  publication-title: Nature
  doi: 10.1038/s41586-018-0394-6
– volume: 2015
  start-page: 206937
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib53
  article-title: Comprehensive analysis of transcriptome sequencing data in the lung tissues of COPD subjects
  publication-title: Int. J. Genomics
  doi: 10.1155/2015/206937
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib77
  article-title: Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
  publication-title: bioRxiv
– volume: 117
  start-page: 1108
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib55
  article-title: Chronic exposure to arsenic in the drinking water alters the expression of immune response genes in mouse lung
  publication-title: Environ. Health Perspect.
  doi: 10.1289/ehp.0800199
– volume: 9
  start-page: e88848
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib40
  article-title: Analysis of Notch signaling-dependent gene expression in developing airways reveals diversity of Clara cells
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0088848
– volume: 161
  start-page: 1016
  year: 2000
  ident: 10.1016/j.devcel.2020.05.012_bib102
  article-title: Goblet cell hyperplasia and epithelial inflammation in peripheral airways of smokers with both symptoms of chronic bronchitis and chronic airflow limitation
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/ajrccm.161.3.9907080
– volume: 139
  start-page: 1255
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib106
  article-title: A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection
  publication-title: Cell
  doi: 10.1016/j.cell.2009.12.018
– volume: 28
  start-page: 1248
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib117
  article-title: Towards a knowledge-based human protein atlas
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt1210-1248
– volume: 8
  start-page: 2232
  year: 2016
  ident: 10.1016/j.devcel.2020.05.012_bib108
  article-title: Global gene profiling of aging lungs in Atp8b1 mutant mice
  publication-title: Aging (Albany, NY)
  doi: 10.18632/aging.101056
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib99
  article-title: Interleukin-6 blockade for severe COVID-19
  publication-title: MedRxiv
– volume: 127
  start-page: 558
  year: 2005
  ident: 10.1016/j.devcel.2020.05.012_bib30
  article-title: The interactions Between cigarette smoking and reduced lung function on systemic inflammation
  publication-title: Chest
  doi: 10.1378/chest.127.2.558
– ident: 10.1016/j.devcel.2020.05.012_bib105
  doi: 10.25080/Majora-92bf1922-011
– volume: 103
  start-page: 281
  year: 1995
  ident: 10.1016/j.devcel.2020.05.012_bib52
  article-title: Distribution of E-cadherin and Ep-CAM in the human lung during development and after injury
  publication-title: Histochem. Cell Biol.
  doi: 10.1007/BF01457412
– volume: 23
  start-page: 117
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib110
  article-title: Cigarette smoke exposure impairs respiratory epithelial ciliogenesis
  publication-title: Am J Rhinol Allergy
  doi: 10.2500/ajra.2009.23.3280
– volume: 19
  start-page: 15
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib127
  article-title: SCANPY: large-scale single-cell gene expression data analysis
  publication-title: Genome Biol.
  doi: 10.1186/s13059-017-1382-0
– volume: 196
  start-page: 340
  year: 2017
  ident: 10.1016/j.devcel.2020.05.012_bib134
  article-title: Smoking-dependent distal-to-proximal repatterning of the adult human small airway epithelium
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201608-1672OC
– start-page: e105114
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib64
  article-title: SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells
  publication-title: EMBO J.
  doi: 10.15252/embj.2020105114
– volume: 53
  start-page: 1
  year: 2015
  ident: 10.1016/j.devcel.2020.05.012_bib125
  article-title: Alveolar development and disease
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2015-0128PS
– volume: 155
  start-page: 242
  year: 1997
  ident: 10.1016/j.devcel.2020.05.012_bib5
  article-title: Cigarette smoking: a risk factor for idiopathic pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/ajrccm.155.1.9001319
– volume: 323
  start-page: 1239
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib131
  article-title: Characteristics of and important lessons from the coronavirus disease 2019 (COVID-19) outbreak in China: summary of a report of 72 314 cases from the Chinese center for disease control and prevention
  publication-title: JAMA
  doi: 10.1001/jama.2020.2648
– ident: 10.1016/j.devcel.2020.05.012_bib11
– volume: 30
  start-page: 207
  year: 2002
  ident: 10.1016/j.devcel.2020.05.012_bib23
  article-title: Gene expression omnibus: NCBI gene expression and hybridization array data repository
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/30.1.207
– volume: 436
  start-page: 112
  year: 2005
  ident: 10.1016/j.devcel.2020.05.012_bib46
  article-title: Angiotensin-converting enzyme 2 protects from severe acute lung failure
  publication-title: Nature
  doi: 10.1038/nature03712
– volume: 26
  start-page: 502
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib133
  article-title: Characteristics of pediatric SARS-CoV-2 infection and potential evidence for persistent fecal viral shedding
  publication-title: Nat. Med.
  doi: 10.1038/s41591-020-0817-4
– volume: 199
  start-page: 1517
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib95
  article-title: Single-cell transcriptomic analysis of human lung provides insights into the pathobiology of pulmonary fibrosis
  publication-title: Am. J. Respir. Crit. Care Med.
  doi: 10.1164/rccm.201712-2410OC
– volume: 15
  start-page: S143
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib124
  article-title: Airway epithelial differentiation and mucociliary clearance
  publication-title: Ann. Am. Thorac. Soc.
  doi: 10.1513/AnnalsATS.201802-128AW
– volume: 12
  start-page: 901
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib51
  article-title: Life spanning murine gene expression profiles in relation to chronological and pathological aging in multiple organs
  publication-title: Aging Cell
  doi: 10.1111/acel.12118
– volume: 7
  start-page: e36865
  year: 2018
  ident: 10.1016/j.devcel.2020.05.012_bib60
  article-title: Pdgfra marks a cellular lineage with distinct contributions to myofibroblasts in lung maturation and injury response
  publication-title: eLife
  doi: 10.7554/eLife.36865
– volume: 7
  start-page: 1175
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib121
  article-title: An airway epithelial iNOS–DUOX2–thyroid peroxidase metabolome drives Th1/Th2 nitrative stress in human severe asthma
  publication-title: Mucosal Immunol.
  doi: 10.1038/mi.2014.6
– volume: 45
  start-page: 580
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib37
  article-title: The genotype-tissue expression (GTEx) project
  publication-title: Nat. Genet.
  doi: 10.1038/ng.2653
– volume: 81
  start-page: 813
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib67
  article-title: Lethal infection of K18-hACE2 mice infected with severe acute respiratory syndrome coronavirus
  publication-title: J. Virol.
  doi: 10.1128/JVI.02012-06
– volume: 47
  start-page: W191
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib91
  article-title: g:profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update)
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkz369
– volume: 8
  start-page: e69374
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib72
  article-title: A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0069374
– volume: 48
  start-page: D77
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib84
  article-title: Expression atlas update: from tissues to single cells
  publication-title: Nucleic Acids Res.
– volume: 50
  start-page: 637
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib38
  article-title: Chemosensory functions for pulmonary neuroendocrine cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2013-0199OC
– volume: 18
  start-page: 363
  year: 2007
  ident: 10.1016/j.devcel.2020.05.012_bib31
  article-title: The response of mammalian cells to double-stranded RNA
  publication-title: Cytokine Growth Factor Rev
  doi: 10.1016/j.cytogfr.2007.06.016
– volume: 382
  start-page: 1708
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib39
  article-title: Clinical characteristics of coronavirus disease 2019 in China
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMoa2002032
– volume: 167
  start-page: 105941
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib62
  article-title: Chronic obstructive pulmonary disease is associated with severe coronavirus disease 2019 (COVID-19)
  publication-title: Respir. Med.
  doi: 10.1016/j.rmed.2020.105941
– volume: 79
  start-page: 14614
  year: 2005
  ident: 10.1016/j.devcel.2020.05.012_bib48
  article-title: ACE2 receptor expression and severe acute respiratory syndrome coronavirus infection depend on differentiation of human airway epithelia
  publication-title: J. Virol.
  doi: 10.1128/JVI.79.23.14614-14621.2005
– ident: 10.1016/j.devcel.2020.05.012_bib15
– volume: 86
  start-page: 5422
  year: 2012
  ident: 10.1016/j.devcel.2020.05.012_bib47
  article-title: Plasticity and virus specificity of the airway epithelial cell immune response during respiratory virus infection
  publication-title: J. Virol.
  doi: 10.1128/JVI.06757-11
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib118
– volume: 55
  start-page: 2000688
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib59
  article-title: ACE-2 expression in the small airway epithelia of smokers and COPD patients: implications for COVID-19
  publication-title: Eur. Respir. J.
  doi: 10.1183/13993003.00688-2020
– volume: 49
  start-page: 384
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib66
  article-title: Changes in microRNA and mRNA expression with differentiation of human bronchial epithelial cells
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2012-0368OC
– volume: 4
  start-page: 525
  year: 2009
  ident: 10.1016/j.devcel.2020.05.012_bib92
  article-title: The role of Scgb1a1+ Clara cells in the long-term maintenance and repair of lung airway, but not alveolar, epithelium
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2009.04.002
– volume: 363
  start-page: 2233
  year: 2010
  ident: 10.1016/j.devcel.2020.05.012_bib24
  article-title: Airway mucus function and dysfunction
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMra0910061
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib114
  article-title: A molecular cell atlas of the human lung from single cell RNA sequencing
  publication-title: bioRxiv
– volume: 35
  start-page: 65
  year: 2006
  ident: 10.1016/j.devcel.2020.05.012_bib36
  article-title: Human lung project: evaluating variance of gene expression in the human lung
  publication-title: Am. J. Respir. Cell Mol. Biol.
  doi: 10.1165/rcmb.2004-0261OC
– volume: 395
  start-page: 1225
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib94
  article-title: COVID-19 and Italy: what next?
  publication-title: Lancet
  doi: 10.1016/S0140-6736(20)30627-9
– start-page: 1
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib142
  article-title: CT features of SARS-CoV-2 pneumonia according to clinical presentation: a retrospective analysis of 120 consecutive patients from Wuhan city
  publication-title: Eur. Radiol.
– volume: 15
  start-page: 9
  year: 2014
  ident: 10.1016/j.devcel.2020.05.012_bib122
  article-title: dsRNA-induced changes in gene expression profiles of primary nasal and bronchial epithelial cells from patients with asthma, rhinitis and controls
  publication-title: Respir. Res.
  doi: 10.1186/1465-9921-15-9
– volume: 382
  start-page: 727
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib147
  article-title: A novel coronavirus from patients with pneumonia in China, 2019
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMoa2001017
– volume: 20
  start-page: 152
  year: 2019
  ident: 10.1016/j.devcel.2020.05.012_bib21
  article-title: Multi-level immune response network in mild-moderate chronic obstructive pulmonary disease (COPD)
  publication-title: Respir. Res.
  doi: 10.1186/s12931-019-1105-z
– volume: 5
  start-page: 763
  year: 2008
  ident: 10.1016/j.devcel.2020.05.012_bib29
  article-title: Resident cellular components of the human lung: current knowledge and goals for research on cell phenotyping and function
  publication-title: Proc. Am. Thorac. Soc.
  doi: 10.1513/pats.200803-025HR
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib45
  article-title: Risk factors associated with clinical outcomes in 323 COVID-19 patients in Wuhan, China
  publication-title: medRxiv
– volume: 45
  start-page: 1113
  year: 2013
  ident: 10.1016/j.devcel.2020.05.012_bib111
  article-title: The cancer genome atlas pan-cancer analysis project
  publication-title: Nat. Genet.
  doi: 10.1038/ng.2764
– volume: 71
  start-page: 2572
  year: 2011
  ident: 10.1016/j.devcel.2020.05.012_bib10
  article-title: Modulation of cystatin A expression in human airway epithelium related to genotype, smoking, COPD, and lung cancer
  publication-title: Cancer Res
  doi: 10.1158/0008-5472.CAN-10-2046
– volume: 579
  start-page: 265
  year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib130
  article-title: A new coronavirus associated with human respiratory disease in China
  publication-title: Nature
  doi: 10.1038/s41586-020-2008-3
– year: 2020
  ident: 10.1016/j.devcel.2020.05.012_bib86
  article-title: Smoking is associated with COVID-19 progression: a meta-analysis
  publication-title: MedRxiv
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Snippet The factors mediating fatal SARS-CoV-2 infections are poorly understood. Here, we show that cigarette smoke causes a dose-dependent upregulation of angiotensin...
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SubjectTerms ACE2
Adult
Aged
Alveolar Epithelial Cells - metabolism
Angiotensin-Converting Enzyme 2
Animals
Caco-2 Cells
Cells, Cultured
Coronavirus
Coronavirus Infections - epidemiology
COVID-19
Female
HCT116 Cells
Humans
inflammation
interferon
Interferons - genetics
Interferons - metabolism
lung development
Male
Mice
Middle Aged
Pandemics
Peptidyl-Dipeptidase A - genetics
Peptidyl-Dipeptidase A - metabolism
Pneumonia, Viral - epidemiology
Rats
Respiratory Mucosa - metabolism
RNA, Messenger - genetics
RNA, Messenger - metabolism
RNA-Seq
SARS-CoV-2
Signal Transduction
Single-Cell Analysis
smoking
Tobacco Smoke Pollution - adverse effects
Tobacco Smoking - epidemiology
Tobacco Smoking - genetics
Tobacco Smoking - metabolism
Up-Regulation
Title Cigarette Smoke Exposure and Inflammatory Signaling Increase the Expression of the SARS-CoV-2 Receptor ACE2 in the Respiratory Tract
URI https://dx.doi.org/10.1016/j.devcel.2020.05.012
https://www.ncbi.nlm.nih.gov/pubmed/32425701
https://www.proquest.com/docview/2404641772
https://pubmed.ncbi.nlm.nih.gov/PMC7229915
Volume 53
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