Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection - Stewart, David B.; Wright, Justin R.; Fowler, Maria; McLimans, Christopher J.; Tokarev, Vasily; Amaniera, Isabella; Baker, Owen; Wong, Hoi-Tong; Brabec, Jeff; Drucker, Rebecca; Lamendella, Regina (mSphere, 2019)
Keywords: Adult; Aged; Aged, 80 and over; Antibiotics; Bacteria; Biofilms; Biomarkers; Cardiovascular disease; Clinical Science and Epidemiology; Clostridioides difficile; Clostridium difficile - genetics; Clostridium Infections - microbiology; Datasets; Diarrhea; Diarrhea - microbiology; Discriminant analysis; Dysbacteriosis; Feces - microbiology; Flagella; Fungi; Fungi - genetics; Gastrointestinal Microbiome; Hospitals; Humans; Intestinal microflora; Linoleic acid; Metabolic Networks and Pathways; Metadata; Metagenomics; metatranscriptomics; microbiome; Microbiomes; Middle Aged; mycobiome; rRNA; Sequence Analysis, DNA; Spacer; Taxonomy; Transcriptome; United States--US; Arizona; Pennsylvania; Clostridioides difficile; mycobiome; metatranscriptomics; microbiome; metagenomics