Computational tools for exploring peptide-membrane interactions in gram-positive bacteria - Kumar, Shreya; Balaya, Rex Devasahayam Arokia; Kanekar, Saptami; Raju, Rajesh; Prasad, Thottethodi Subrahmanya Keshava; Kandasamy, Richard K. (Computational and structural biotechnology journal, 2023)
Keywords: amino acid composition; biofilm; biomarkers; biotechnology; BIP Inhibitors; computer simulation; digestive system; drugs; gene expression; Gram-positive bacteria; humans; In silico approaches; peptides; prediction; QSP inhibitors; QSP predictors; Quorum sensing peptides; Review; surveys; therapeutics; BFE; RAP; QSPR; GDC; TRG; Gram-positive bacteria; 3-HBA; TRAP; HNP; DT; QSP predictors; MRSA; MD; MDR; BLAST; WHO; ML; QS; AAC; AMP; ROC; AIP; DCH; PSM; H-Kinase; QSCN; IT; Quorum sensing peptides; HGM; RF; OMR; In silico approaches; GNB; PCP; SIT; CADD; ABC; FDA; D; TCS; SAR; H; PTM; OVP; KNN; SVM; PDB; QSHGM; GBM; mRMR; QSIM; CSP; SFS; ACD; QSI; MSL; BIP; MCC; Agr; QSP; PPIs; QSP inhibitors; CTD; HAM; BNB; H-phosphotransferase; RIP; ATP; BIP Inhibitors; AIP, Autoinducing Peptide; SVM, Support Vector Machine; ML, Machine Learning; GNB, Gaussian NB; QS, Quorum Sensing; D, Aspartate; ATP, Adenosine Triphosphate; PSM, Phenol-Soluble Modulin; PPIs, Protein-Protein Interactions; MRSA, Methicillin Resistant S. aureus; QSP, QS Peptides