Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome
The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have bee...
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Published in | Marine genomics Vol. 5; pp. 43 - 51 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
Published |
Netherlands
Elsevier B.V
01.03.2012
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Online Access | Get full text |
ISSN | 1874-7787 1876-7478 1876-7478 |
DOI | 10.1016/j.margen.2011.09.002 |
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Abstract | The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity.
The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins.
► The venom duct transcriptome of Conus pulicarius was sequenced using the NGS technology. ► The conotoxin sequences identified were diverse, belonging to at least 14 superfamilies. ► Conotoxin sequences with unusual features were observed. ► Analysis of the O-superfamily sequences revealed insights into the evolution of conotoxins. |
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AbstractList | The venom peptides (i.e., conotoxins or conopeptides) that species in the genus
Conus
collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity.
The whole transcriptome of a venom duct from the vermivorous marine snail
C. pulicarius
was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a
Conus
venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of
Conus
venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of
C. pulicarius
. In addition, the contry-phans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins. The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity. The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins. ► The venom duct transcriptome of Conus pulicarius was sequenced using the NGS technology. ► The conotoxin sequences identified were diverse, belonging to at least 14 superfamilies. ► Conotoxin sequences with unusual features were observed. ► Analysis of the O-superfamily sequences revealed insights into the evolution of conotoxins. The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity. The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins. The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity. The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins.The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around 50,000 to 140,000, but the pace of discovery and characterization of these peptides have been rather slow. To date, only a minor fraction have been identified and studied. However, the advent of next-generation DNA sequencing technologies has opened up opportunities for expediting the exploration of this diversity. The whole transcriptome of a venom duct from the vermivorous marine snail C. pulicarius was sequenced using the 454 sequencing platform. Analysis of the data set resulted in the identification of over eighty unique putative conopeptide sequences, the highest number discovered so far from a Conus venom duct transcriptome. More importantly, majority of the sequences were potentially novel, many with unexpected structural features, hinting at the vastness of the diversity of Conus venom peptides that remains to be explored. The sequences represented at least 14 major superfamilies/types (disulfide- and non-disulfide-rich), indicating the structural and functional diversity of conotoxins in the venom of C. pulicarius. In addition, the contryphans were surprisingly more diverse than what is currently known. Comparative analysis of the O-superfamily sequences also revealed insights into the complexity of the processes that drive the evolution and diversification of conotoxins. |
Author | Lluisma, Arturo O. Moore, Barry Olivera, Baldomero M. Bandyopadhyay, Pradip K. Milash, Brett A. |
AuthorAffiliation | a Department of Biology, University of Utah, Salt Lake City, UT, USA b Marine Science Institute, University of the Philippines, Quezon City, Philippines c Bioinformatics Core Facility, University of Utah, Salt Lake City, UT, USA d Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA |
AuthorAffiliation_xml | – name: c Bioinformatics Core Facility, University of Utah, Salt Lake City, UT, USA – name: b Marine Science Institute, University of the Philippines, Quezon City, Philippines – name: d Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA – name: a Department of Biology, University of Utah, Salt Lake City, UT, USA |
Author_xml | – sequence: 1 givenname: Arturo O. surname: Lluisma fullname: Lluisma, Arturo O. organization: Department of Biology, University of Utah, Salt Lake City, UT, USA – sequence: 2 givenname: Brett A. surname: Milash fullname: Milash, Brett A. organization: Bioinformatics Core Facility, University of Utah, Salt Lake City, UT, USA – sequence: 3 givenname: Barry surname: Moore fullname: Moore, Barry organization: Eccles Institute of Human Genetics, University of Utah, Salt Lake City, UT, USA – sequence: 4 givenname: Baldomero M. surname: Olivera fullname: Olivera, Baldomero M. email: olivera@biology.utah.edu organization: Department of Biology, University of Utah, Salt Lake City, UT, USA – sequence: 5 givenname: Pradip K. surname: Bandyopadhyay fullname: Bandyopadhyay, Pradip K. organization: Department of Biology, University of Utah, Salt Lake City, UT, USA |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22325721$$D View this record in MEDLINE/PubMed |
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Snippet | The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around... The venom peptides (i.e., conotoxins or conopeptides) that species in the genus Conus collectively produce are remarkably diverse, estimated to be around... |
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SubjectTerms | Amino Acid Sequence Animals chemistry Conopeptide Conotoxin Conotoxins Conotoxins - chemistry Conotoxins - genetics Conus Conus Snail Conus Snail - chemistry Conus Snail - genetics correlation data collection evolution functional diversity genetics high-throughput nucleotide sequencing Marine Molecular Sequence Data Multigene Family peptides Peptides - chemistry Peptides - genetics Phylogeny Sequence Alignment Sequence Analysis, DNA snails Toxin Transcriptome venoms |
Title | Novel venom peptides from the cone snail Conus pulicarius discovered through next-generation sequencing of its venom duct transcriptome |
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