Ribosome and Translational Control in Stem Cells

Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic...

Full description

Saved in:
Bibliographic Details
Published inCells (Basel, Switzerland) Vol. 9; no. 2; p. 497
Main Authors Gabut, Mathieu, Bourdelais, Fleur, Durand, Sébastien
Format Journal Article
LanguageEnglish
Published Switzerland MDPI 21.02.2020
MDPI AG
Subjects
Online AccessGet full text

Cover

Loading…
Abstract Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate.
AbstractList Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate.
Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate.Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate.
Author Durand, Sébastien
Bourdelais, Fleur
Gabut, Mathieu
AuthorAffiliation 2 Université Claude Bernard Lyon 1, 69100 Villeurbanne, France
1 Equipe ‘Transcriptome Diversity in Stem Cells’, Cancer Cell Plasticity Department, INSERM 1052, CNRS 5286, Cancer Research Center of Lyon, Centre Léon Bérard, 69008 Lyon, France fleur.bourdelais@gmail.com (F.B.)
AuthorAffiliation_xml – name: 1 Equipe ‘Transcriptome Diversity in Stem Cells’, Cancer Cell Plasticity Department, INSERM 1052, CNRS 5286, Cancer Research Center of Lyon, Centre Léon Bérard, 69008 Lyon, France fleur.bourdelais@gmail.com (F.B.)
– name: 2 Université Claude Bernard Lyon 1, 69100 Villeurbanne, France
Author_xml – sequence: 1
  givenname: Mathieu
  orcidid: 0000-0001-7343-5361
  surname: Gabut
  fullname: Gabut, Mathieu
– sequence: 2
  givenname: Fleur
  orcidid: 0000-0001-7394-8714
  surname: Bourdelais
  fullname: Bourdelais, Fleur
– sequence: 3
  givenname: Sébastien
  orcidid: 0000-0002-9960-9099
  surname: Durand
  fullname: Durand, Sébastien
BackLink https://www.ncbi.nlm.nih.gov/pubmed/32098201$$D View this record in MEDLINE/PubMed
https://hal.science/hal-03811099$$DView record in HAL
BookMark eNptks9rVDEQx4NUbLv25lneUaGrk-Tl10Uoi9rCgqD1HPKSvDYlL6nJ20L_e7PdVrbFXBIm3_l8Z5g5RgcpJ4_QOwyfKFXw2foYqwICvRKv0BEBQZd9D-pg732ITmq9gXYk5hjYG3RICShJAB8h-BmGXPPkO5Ncd1lMqtHMIScTu1VOc8mxC6n7NfupW23N3qLXo4nVnzzeC_T729fL1fly_eP7xepsvbSMwbwcea-8IoRIkExyKWUPTIqeSu4EB2MJOAGjxGqUlinFQACVxDs-UDEOQBfoYsd12dzo2xImU-51NkE_BHK50qbMwUavnRkFYDcA9qLHnhljBBOCW0alY81zgb7sWLebYfLO-taXic-gz39SuNZX-U4LEET0vAE-7gDXL9LOz9Z6G2u1YwxK3eGm_fBoVvKfja-znkLdzskknzdVE8oZloop2aTv9-v6R34aTxOQncCWXGvxo7ZhfhhPKzNEjUFv10Dvr0FLOn2R9MT9r_wvq3Swgw
CitedBy_id crossref_primary_10_1016_j_devcel_2022_03_005
crossref_primary_10_3390_ijms241411366
crossref_primary_10_1007_s11033_024_09963_y
crossref_primary_10_1371_journal_ppat_1009239
crossref_primary_10_1016_j_tig_2024_07_006
crossref_primary_10_1038_s41467_023_36037_7
crossref_primary_10_1016_j_devcel_2022_03_001
crossref_primary_10_1038_s41467_022_35252_y
crossref_primary_10_1038_s41437_024_00715_z
crossref_primary_10_1038_s41416_023_02340_9
crossref_primary_10_1007_s00204_023_03580_7
crossref_primary_10_1038_s41598_024_52970_z
crossref_primary_10_3390_jdb10020023
crossref_primary_10_3390_cells9112484
crossref_primary_10_1016_j_bbrc_2021_12_030
crossref_primary_10_1016_j_stemcr_2022_11_020
crossref_primary_10_1007_s11033_020_05410_w
crossref_primary_10_1186_s12864_024_10855_5
crossref_primary_10_26508_lsa_202302337
crossref_primary_10_1111_cpr_13499
crossref_primary_10_1038_s41580_021_00386_2
crossref_primary_10_4049_jimmunol_2200042
crossref_primary_10_1016_j_biopha_2023_115739
crossref_primary_10_1186_s13148_024_01628_8
crossref_primary_10_1016_j_gene_2023_147290
crossref_primary_10_1007_s11914_023_00809_3
crossref_primary_10_1016_j_semcdb_2022_06_004
crossref_primary_10_1016_j_celrep_2021_110234
crossref_primary_10_1016_j_isci_2023_107386
crossref_primary_10_1016_j_scr_2021_102499
crossref_primary_10_7554_eLife_66904
crossref_primary_10_1093_neuonc_noad090
crossref_primary_10_3389_fphys_2022_858274
crossref_primary_10_1007_s40778_021_00188_4
crossref_primary_10_1016_j_celrep_2023_113293
crossref_primary_10_3390_cells10081948
crossref_primary_10_3389_fncel_2020_00264
crossref_primary_10_3390_cells9051228
crossref_primary_10_1016_j_bbcan_2022_188718
crossref_primary_10_1038_s41467_024_53822_0
crossref_primary_10_1038_s41598_021_98267_3
crossref_primary_10_1016_j_jcmgh_2022_02_007
crossref_primary_10_1016_j_stemcr_2021_03_022
crossref_primary_10_1073_pnas_2404146121
crossref_primary_10_1093_neuonc_noad140
crossref_primary_10_3389_fmolb_2022_863885
crossref_primary_10_1111_jcmm_16752
crossref_primary_10_1038_s41420_021_00542_9
crossref_primary_10_3389_fcell_2023_1142929
crossref_primary_10_3390_ijms241512139
crossref_primary_10_1016_j_stemcr_2024_04_002
crossref_primary_10_5483_BMBRep_2023_0161
crossref_primary_10_3389_fmolb_2020_577710
Cites_doi 10.1016/j.stem.2015.07.002
10.1096/fj.201700780R
10.1038/cdd.2015.57
10.1042/BST0340012
10.1016/j.scr.2014.04.011
10.1093/nar/gkw547
10.4161/nucl.32235
10.1371/journal.pone.0011779
10.1038/nsmb.2638
10.1038/nm.2336
10.1007/s12015-011-9286-y
10.1093/nar/gkw810
10.4161/rna.27427
10.4161/cc.11.3.19002
10.1089/cell.2010.0011
10.1371/journal.pone.0139076
10.1186/s13059-016-1104-z
10.1042/BST20160117
10.1096/fj.201802536RR
10.1104/pp.010265
10.1080/15476286.2019.1670598
10.1111/j.1474-9726.2011.00722.x
10.4161/23723556.2014.983755
10.1083/jcb.201103071
10.1038/nature20578
10.1074/jbc.M109.013342
10.1016/j.febslet.2014.03.024
10.1038/s41588-019-0502-z
10.1016/j.bbagrm.2014.08.015
10.1038/nature18282
10.1073/pnas.082102499
10.1002/wrna.1524
10.1038/s41389-018-0044-8
10.1093/nar/gkm1007
10.1038/s41598-019-39530-6
10.1371/journal.pbio.1001455
10.1016/j.cell.2018.03.008
10.1186/gb-2009-10-1-r2
10.1073/pnas.1418845112
10.1038/nature10098
10.1016/0014-4827(84)90705-5
10.1038/s41467-018-05320-3
10.1182/blood-2010-07-295238
10.7554/eLife.03077
10.1038/msb.2011.84
10.1126/science.1246384
10.1038/nm.3557
10.1002/jcb.10594
10.1016/j.stem.2014.02.005
10.1016/j.celrep.2019.02.088
10.1016/j.cell.2011.03.028
10.1101/gad.285239.116
10.1128/MCB.22.23.8101-8113.2002
10.3390/cells8030229
10.1016/j.stem.2008.03.013
10.1038/s41593-019-0491-3
10.1038/nsmb.2357
10.1016/j.bbrc.2018.02.153
10.1016/j.devcel.2013.01.018
10.1371/journal.pgen.1007226
10.1016/j.cell.2007.08.037
10.1186/1471-2199-11-33
10.1634/stemcells.2008-0506
10.1126/science.aad9868
10.1080/21675511.2015.1025185
10.1073/pnas.0810916106
10.3389/fonc.2019.00692
10.1038/s41467-017-02305-6
10.1242/dev.02151
10.1016/j.stem.2013.09.004
10.1016/j.cell.2011.10.002
10.7554/eLife.03573
10.1089/scd.2013.0470
10.1016/j.isci.2019.01.026
10.1002/1873-3468.13559
10.1101/gad.282756.116
10.1128/MCB.01377-08
10.1089/scd.2012.0015
10.1016/j.stem.2015.11.004
10.1038/nrc.2017.104
10.1083/jcb.147.7.1431
10.1038/nature13035
10.1016/S0959-440X(03)00009-5
10.1016/j.stem.2015.09.020
10.1038/s41580-018-0034-x
10.1038/nsmb.3442
10.1038/ng1429
10.1016/j.cell.2014.02.006
10.1016/j.cub.2017.04.017
10.1093/bioinformatics/17.12.1152
10.1038/nrm2838
10.1007/s00294-017-0764-x
10.1016/j.molcel.2014.03.023
10.1073/pnas.1809588115
10.1083/jcb.200408003
10.1371/journal.pgen.1002403
10.1074/jbc.M804594200
10.1530/REP-14-0391
10.1186/s13287-018-1050-7
10.15698/cst2018.06.139
10.1126/science.aan2755
10.1016/j.bbrc.2013.10.032
10.1016/j.gene.2013.02.040
10.1093/nar/gkz637
10.1042/bj3050391
10.1016/j.cell.2012.03.017
10.1016/j.ydbio.2017.09.012
10.1016/j.celrep.2018.04.023
10.1101/gad.267112.115
10.1016/j.febslet.2009.10.036
10.1242/dev.162636
10.1016/j.molcel.2012.03.013
10.1016/j.stem.2019.08.018
10.15252/embr.201745130
10.1016/j.celrep.2013.09.017
10.1016/j.molcel.2017.05.021
10.1261/rna.067843.118
10.1105/tpc.15.00546
10.1128/MCB.25.16.7120-7136.2005
10.1128/MCB.25.17.7534-7545.2005
10.1042/BST0381027
10.1038/nature08575
10.1038/s41580-018-0078-y
10.1073/pnas.1707674114
10.1084/jem.20122019
10.1016/j.cmet.2016.10.003
10.1242/dev.099010
10.7554/eLife.46919
10.1016/j.celrep.2015.09.056
10.1242/dmm.020529
10.1080/15476286.2016.1259781
10.1016/j.molcel.2008.03.018
10.1038/msb.2013.47
10.1371/journal.pgen.1000898
10.1002/stem.1825
10.15252/embj.201489282
10.1016/j.ydbio.2012.11.031
10.1021/pr9008964
10.1101/gad.55671
10.1016/j.neuron.2014.10.022
10.1101/gr.195404.115
10.1128/MCB.20.23.8635-8642.2000
10.1002/stem.55
10.1016/j.stem.2018.02.004
10.1016/j.stem.2015.06.002
10.1371/journal.pone.0157276
10.1074/jbc.M111.225185
10.1016/j.celrep.2016.12.034
10.1016/j.stem.2018.03.002
10.18632/aging.100222
10.3390/biom8040123
10.1016/j.cell.2016.03.014
10.1002/jcp.1041130110
10.1093/nar/gkv205
10.1101/gr.214202
ContentType Journal Article
Copyright Distributed under a Creative Commons Attribution 4.0 International License
2020 by the authors. 2020
Copyright_xml – notice: Distributed under a Creative Commons Attribution 4.0 International License
– notice: 2020 by the authors. 2020
DBID AAYXX
CITATION
CGR
CUY
CVF
ECM
EIF
NPM
7X8
1XC
VOOES
5PM
DOA
DOI 10.3390/cells9020497
DatabaseName CrossRef
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
Hyper Article en Ligne (HAL)
Hyper Article en Ligne (HAL) (Open Access)
PubMed Central (Full Participant titles)
DOAJ Directory of Open Access Journals
DatabaseTitle CrossRef
MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList
MEDLINE - Academic
CrossRef


MEDLINE
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 2073-4409
ExternalDocumentID oai_doaj_org_article_daf701db01e741e5aaa75776c538d574
PMC7072746
oai_HAL_hal_03811099v1
32098201
10_3390_cells9020497
Genre Research Support, Non-U.S. Gov't
Journal Article
Review
GroupedDBID 53G
5VS
8FE
8FH
AADQD
AAFWJ
AAYXX
ABDBF
ACUHS
ADBBV
AFKRA
AFPKN
AFZYC
ALMA_UNASSIGNED_HOLDINGS
AOIJS
BAWUL
BBNVY
BCNDV
BENPR
BHPHI
CCPQU
CITATION
DIK
EBD
ESX
GROUPED_DOAJ
HCIFZ
HYE
IAO
IHR
KQ8
LK8
M48
M7P
MODMG
M~E
OK1
PGMZT
PHGZM
PHGZT
PIMPY
PROAC
RPM
CGR
CUY
CVF
ECM
EIF
NPM
7X8
PQGLB
1XC
ADRAZ
IPNFZ
ITC
RIG
VOOES
5PM
PUEGO
ID FETCH-LOGICAL-c550t-f649e9222808586888405874386d760ac20d70f819f8c5995070382ed6b37fb03
IEDL.DBID M48
ISSN 2073-4409
IngestDate Wed Aug 27 01:31:34 EDT 2025
Thu Aug 21 13:35:16 EDT 2025
Fri May 09 12:26:20 EDT 2025
Fri Jul 11 00:54:06 EDT 2025
Thu Apr 03 06:59:46 EDT 2025
Tue Jul 01 01:05:58 EDT 2025
Thu Apr 24 22:54:53 EDT 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 2
Keywords ribosomal proteins
ribosomes
stem cells
rRNA modifications
specialized ribosomes
translational regulation
ribosome biogenesis
Language English
License https://creativecommons.org/licenses/by/4.0
Distributed under a Creative Commons Attribution 4.0 International License: http://creativecommons.org/licenses/by/4.0
Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c550t-f649e9222808586888405874386d760ac20d70f819f8c5995070382ed6b37fb03
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
ObjectType-Review-3
content type line 23
ORCID 0000-0001-7343-5361
0000-0002-9960-9099
0000-0001-7394-8714
OpenAccessLink http://journals.scholarsportal.info/openUrl.xqy?doi=10.3390/cells9020497
PMID 32098201
PQID 2365189598
PQPubID 23479
ParticipantIDs doaj_primary_oai_doaj_org_article_daf701db01e741e5aaa75776c538d574
pubmedcentral_primary_oai_pubmedcentral_nih_gov_7072746
hal_primary_oai_HAL_hal_03811099v1
proquest_miscellaneous_2365189598
pubmed_primary_32098201
crossref_citationtrail_10_3390_cells9020497
crossref_primary_10_3390_cells9020497
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2020-02-21
PublicationDateYYYYMMDD 2020-02-21
PublicationDate_xml – month: 02
  year: 2020
  text: 2020-02-21
  day: 21
PublicationDecade 2020
PublicationPlace Switzerland
PublicationPlace_xml – name: Switzerland
PublicationTitle Cells (Basel, Switzerland)
PublicationTitleAlternate Cells
PublicationYear 2020
Publisher MDPI
MDPI AG
Publisher_xml – name: MDPI
– name: MDPI AG
References Dierickx (ref_131) 2018; 19
ref_93
Kondrashov (ref_150) 2011; 145
Yu (ref_90) 2019; 33
Luhrig (ref_94) 2014; 23
Kim (ref_114) 2009; 29
ref_12
Yoshihama (ref_119) 2002; 12
Penalva (ref_1) 2009; 5
Yoffe (ref_41) 2016; 30
Baddoo (ref_84) 2003; 89
Danilova (ref_107) 2015; 8
Kwon (ref_67) 2013; 20
Schwanhausser (ref_3) 2011; 473
Morris (ref_40) 2000; 20
Sfakianos (ref_53) 2016; 44
Hartman (ref_22) 2013; 5
ref_128
Marcel (ref_157) 2015; 2
Qu (ref_86) 2012; 197
ref_120
Easley (ref_11) 2010; 12
ref_123
Yang (ref_75) 2011; 286
Mendell (ref_39) 2004; 36
Raju (ref_137) 2015; 149
Ohtsuka (ref_50) 2015; 4
Corsini (ref_117) 2018; 22
Shi (ref_162) 2017; 67
Tsuboi (ref_135) 2012; 46
Fichelson (ref_63) 2009; 25
Sugihara (ref_148) 2013; 521
Li (ref_77) 2009; 27
Liu (ref_8) 2016; 165
Munoz (ref_4) 2011; 7
Ximerakis (ref_70) 2019; 22
Slavov (ref_161) 2015; 13
ref_159
Lu (ref_6) 2009; 462
Jouffe (ref_127) 2013; 11
You (ref_16) 2015; 29
Chen (ref_101) 2014; 54
Hinnebusch (ref_34) 2016; 352
Ren (ref_65) 2019; 26
Dutt (ref_112) 2011; 117
Sloan (ref_155) 2017; 14
ref_76
Liu (ref_100) 2018; 115
Hebras (ref_158) 2020; 17
Ohmura (ref_85) 2008; 26
Sugihara (ref_145) 2010; 9
Bennett (ref_91) 2018; 14
Xi (ref_138) 2005; 132
Missra (ref_126) 2015; 27
Balasubramanian (ref_144) 2009; 10
Zhang (ref_151) 2013; 24
Zhao (ref_23) 2015; 17
Jarzebowski (ref_62) 2018; 24
Cai (ref_66) 2015; 17
Biechele (ref_48) 2016; 540
Wong (ref_149) 2014; 11
Barakat (ref_142) 2001; 127
ref_83
ref_147
Signer (ref_26) 2016; 30
ref_80
Luo (ref_97) 2010; 6
Lotan (ref_19) 1982; 113
Saha (ref_68) 2019; 9
Li (ref_72) 2018; 9
Gowda (ref_102) 2019; 12
Armistead (ref_106) 2014; 588
Athanasiadis (ref_69) 2017; 8
Kong (ref_33) 2018; 32
Koziorowska (ref_18) 1984; 150
Nyamsuren (ref_139) 2014; 13
Pelletier (ref_59) 2018; 18
Cai (ref_92) 2018; 497
Wray (ref_51) 2010; 38
Kedersha (ref_54) 1999; 147
Ludwig (ref_125) 2014; 20
James (ref_104) 2014; 5
Yang (ref_105) 2018; 2
Hamilton (ref_118) 2006; 34
Guzikowski (ref_52) 2019; 10
Incarnato (ref_153) 2017; 45
ref_55
Macrae (ref_29) 2018; 22
Wang (ref_129) 2017; 25
Eleuteri (ref_64) 2018; 23
Guo (ref_98) 2011; 17
Marchand (ref_154) 2016; 44
Bortoluzzi (ref_140) 2001; 17
Yamashita (ref_88) 2013; 441
Stedman (ref_79) 2015; 22
ref_61
Tahmasebi (ref_49) 2014; 14
Calvo (ref_37) 2009; 106
Swaminathan (ref_115) 2005; 25
Shani (ref_42) 2002; 99
Sanchez (ref_24) 2016; 18
Recher (ref_71) 2013; 140
Jiang (ref_146) 2017; 27
Romanova (ref_81) 2009; 284
Novak (ref_20) 2012; 8
Sampath (ref_10) 2008; 2
Klinge (ref_58) 2019; 20
Zhang (ref_60) 2014; 343
Tuorto (ref_32) 2012; 19
Llanos (ref_111) 2012; 11
Freyria (ref_17) 1995; 305 ( Pt 2)
Jackson (ref_35) 2010; 11
Weger (ref_133) 2017; 431
Romanova (ref_82) 2009; 284
Li (ref_136) 2019; 9
Komili (ref_143) 2007; 131
Ingolia (ref_7) 2011; 147
He (ref_15) 2012; 21
Zhang (ref_152) 2017; 18
Erales (ref_156) 2017; 114
Signer (ref_25) 2014; 509
Tasaki (ref_116) 2005; 25
Stolovich (ref_122) 2002; 22
Gingras (ref_46) 2004; 279
Ferretti (ref_160) 2017; 24
Chen (ref_14) 2011; 10
Laplante (ref_47) 2012; 149
ref_31
Janich (ref_130) 2015; 25
Johansson (ref_96) 2010; 2
Zismanov (ref_28) 2016; 18
Meyuhas (ref_121) 2015; 1849
Marash (ref_45) 2008; 30
Guydosh (ref_134) 2014; 156
Liberman (ref_44) 2015; 43
Koyuncu (ref_73) 2018; 9
Yelick (ref_124) 2015; 3
Lewis (ref_43) 2008; 36
ref_103
Janich (ref_132) 2013; 13
ref_108
Yang (ref_27) 2014; 84
Lu (ref_38) 2004; 167
ref_109
Kristensen (ref_5) 2013; 9
Takada (ref_74) 2014; 32
Guimaraes (ref_141) 2016; 17
Tahmasebi (ref_110) 2018; 19
Tsai (ref_87) 2002; 16
Telias (ref_99) 2013; 374
Nachmani (ref_95) 2019; 51
Guzzi (ref_13) 2018; 173
Souilhol (ref_78) 2013; 210
Blanco (ref_21) 2016; 534
Fortier (ref_113) 2015; 112
Tsai (ref_89) 2014; 127
ref_9
Sonenberg (ref_36) 2003; 13
Begley (ref_57) 2018; 64
Blanco (ref_30) 2014; 33
Bastide (ref_56) 2018; 7
Maier (ref_2) 2009; 583
References_xml – volume: 17
  start-page: 329
  year: 2015
  ident: ref_23
  article-title: Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2015.07.002
– volume: 32
  start-page: 1108
  year: 2018
  ident: ref_33
  article-title: The histone demethylase KDM5A is required for the repression of astrocytogenesis and regulated by the translational machinery in neural progenitor cells
  publication-title: FASEB J.
  doi: 10.1096/fj.201700780R
– volume: 22
  start-page: 1865
  year: 2015
  ident: ref_79
  article-title: Ribosome biogenesis dysfunction leads to p53-mediated apoptosis and goblet cell differentiation of mouse intestinal stem/progenitor cells
  publication-title: Cell Death Differ.
  doi: 10.1038/cdd.2015.57
– ident: ref_9
– volume: 34
  start-page: 12
  year: 2006
  ident: ref_118
  article-title: TOPs and their regulation
  publication-title: Biochem. Soc. Trans.
  doi: 10.1042/BST0340012
– volume: 13
  start-page: 61
  year: 2014
  ident: ref_139
  article-title: Pelota regulates the development of extraembryonic endoderm through activation of bone morphogenetic protein (BMP) signaling
  publication-title: Stem Cell Res
  doi: 10.1016/j.scr.2014.04.011
– volume: 44
  start-page: e135
  year: 2016
  ident: ref_154
  article-title: Illumina-based RiboMethSeq approach for mapping of 2′-O-Me residues in RNA
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw547
– volume: 5
  start-page: 402
  year: 2014
  ident: ref_104
  article-title: Nucleolar stress with and without p53
  publication-title: Nucleus
  doi: 10.4161/nucl.32235
– ident: ref_159
  doi: 10.1371/journal.pone.0011779
– volume: 20
  start-page: 1122
  year: 2013
  ident: ref_67
  article-title: The RNA-binding protein repertoire of embryonic stem cells
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.2638
– volume: 17
  start-page: 559
  year: 2011
  ident: ref_98
  article-title: Ablation of Fmrp in adult neural stem cells disrupts hippocampus-dependent learning
  publication-title: Nat. Med.
  doi: 10.1038/nm.2336
– volume: 8
  start-page: 137
  year: 2012
  ident: ref_20
  article-title: Proteomics profiling of human embryonic stem cells in the early differentiation stage
  publication-title: Stem Cell Rev. Rep.
  doi: 10.1007/s12015-011-9286-y
– volume: 45
  start-page: 1433
  year: 2017
  ident: ref_153
  article-title: High-throughput single-base resolution mapping of RNA 2-O-methylated residues
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw810
– volume: 11
  start-page: 33
  year: 2014
  ident: ref_149
  article-title: RPL39L is an example of a recently evolved ribosomal protein paralog that shows highly specific tissue expression patterns and is upregulated in ESCs and HCC tumors
  publication-title: RNA Biol.
  doi: 10.4161/rna.27427
– volume: 11
  start-page: 503
  year: 2012
  ident: ref_111
  article-title: Ribosomal stress induces L11- and p53-dependent apoptosis in mouse pluripotent stem cells
  publication-title: Cell Cycle
  doi: 10.4161/cc.11.3.19002
– volume: 12
  start-page: 263
  year: 2010
  ident: ref_11
  article-title: mTOR-mediated activation of p70 S6K induces differentiation of pluripotent human embryonic stem cells
  publication-title: Cell Reprogram
  doi: 10.1089/cell.2010.0011
– ident: ref_12
  doi: 10.1371/journal.pone.0139076
– volume: 279
  start-page: 169
  year: 2004
  ident: ref_46
  article-title: mTOR signaling to translation
  publication-title: Curr. Top. Microbiol. Immunol.
– volume: 17
  start-page: 236
  year: 2016
  ident: ref_141
  article-title: Patterns of ribosomal protein expression specify normal and malignant human cells
  publication-title: Genome Biol.
  doi: 10.1186/s13059-016-1104-z
– volume: 44
  start-page: 1411
  year: 2016
  ident: ref_53
  article-title: Ribonucleoprotein bodies are phased in
  publication-title: Biochem. Soc. Trans.
  doi: 10.1042/BST20160117
– volume: 33
  start-page: 8125
  year: 2019
  ident: ref_90
  article-title: Small ribonucleoprotein particle protein SmD3 governs the homeostasis of germline stem cells and the crosstalk between the spliceosome and ribosome signals in Drosophila
  publication-title: FASEB J.
  doi: 10.1096/fj.201802536RR
– volume: 127
  start-page: 398
  year: 2001
  ident: ref_142
  article-title: The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome
  publication-title: Plant Physiol.
  doi: 10.1104/pp.010265
– volume: 25
  start-page: 780
  year: 2009
  ident: ref_63
  article-title: [Asymetric growth in Drosophila stem cells is related to ribosomal biogenesis]
  publication-title: Med. Sci.
– volume: 17
  start-page: 150
  year: 2020
  ident: ref_158
  article-title: Developmental changes of rRNA ribose methylations in the mouse
  publication-title: RNA Biol.
  doi: 10.1080/15476286.2019.1670598
– volume: 10
  start-page: 908
  year: 2011
  ident: ref_14
  article-title: Rapamycin and other longevity-promoting compounds enhance the generation of mouse induced pluripotent stem cells
  publication-title: Aging Cell
  doi: 10.1111/j.1474-9726.2011.00722.x
– volume: 2
  start-page: e983755
  year: 2015
  ident: ref_157
  article-title: Ribosome heterogeneity in tumorigenesis: The rRNA point of view
  publication-title: Mol. Cell Oncol.
  doi: 10.4161/23723556.2014.983755
– volume: 197
  start-page: 731
  year: 2012
  ident: ref_86
  article-title: Nucleostemin maintains self-renewal of embryonic stem cells and promotes reprogramming of somatic cells to pluripotency
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201103071
– volume: 540
  start-page: 119
  year: 2016
  ident: ref_48
  article-title: Inhibition of mTOR induces a paused pluripotent state
  publication-title: Nature
  doi: 10.1038/nature20578
– volume: 284
  start-page: 26685
  year: 2009
  ident: ref_82
  article-title: Novel role of nucleostemin in the maintenance of nucleolar architecture and integrity of small nucleolar ribonucleoproteins and the telomerase complex
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M109.013342
– volume: 588
  start-page: 1491
  year: 2014
  ident: ref_106
  article-title: Diverse diseases from a ubiquitous process: The ribosomopathy paradox
  publication-title: FEBS Lett.
  doi: 10.1016/j.febslet.2014.03.024
– volume: 51
  start-page: 1518
  year: 2019
  ident: ref_95
  article-title: Germline NPM1 mutations lead to altered rRNA 2′-O-methylation and cause dyskeratosis congenita
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-019-0502-z
– ident: ref_120
– volume: 1849
  start-page: 801
  year: 2015
  ident: ref_121
  article-title: The race to decipher the top secrets of TOP mRNAs
  publication-title: Biochim. Biophys. Acta
  doi: 10.1016/j.bbagrm.2014.08.015
– volume: 534
  start-page: 335
  year: 2016
  ident: ref_21
  article-title: Stem cell function and stress response are controlled by protein synthesis
  publication-title: Nature
  doi: 10.1038/nature18282
– volume: 99
  start-page: 5400
  year: 2002
  ident: ref_42
  article-title: The caspase-cleaved DAP5 protein supports internal ribosome entry site-mediated translation of death proteins
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.082102499
– volume: 10
  start-page: e1524
  year: 2019
  ident: ref_52
  article-title: Stress-induced mRNP granules: Form and function of processing bodies and stress granules
  publication-title: Wiley Interdiscip. Rev. RNA
  doi: 10.1002/wrna.1524
– volume: 7
  start-page: 34
  year: 2018
  ident: ref_56
  article-title: The ribosome, (slow) beating heart of cancer (stem) cell
  publication-title: Oncogenesis
  doi: 10.1038/s41389-018-0044-8
– volume: 36
  start-page: 168
  year: 2008
  ident: ref_43
  article-title: The eIF4G homolog DAP5/p97 supports the translation of select mRNAs during endoplasmic reticulum stress
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkm1007
– volume: 9
  start-page: 3226
  year: 2019
  ident: ref_136
  article-title: Pelota-interacting G protein Hbs1 is required for spermatogenesis in Drosophila
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-39530-6
– volume: 11
  start-page: e1001455
  year: 2013
  ident: ref_127
  article-title: The circadian clock coordinates ribosome biogenesis
  publication-title: PLoS Biol.
  doi: 10.1371/journal.pbio.1001455
– volume: 173
  start-page: 1204
  year: 2018
  ident: ref_13
  article-title: Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells
  publication-title: Cell
  doi: 10.1016/j.cell.2018.03.008
– volume: 10
  start-page: R2
  year: 2009
  ident: ref_144
  article-title: Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes
  publication-title: Genome Biol.
  doi: 10.1186/gb-2009-10-1-r2
– volume: 112
  start-page: 2127
  year: 2015
  ident: ref_113
  article-title: Haploinsufficiency screen highlights two distinct groups of ribosomal protein genes essential for embryonic stem cell fate
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1418845112
– volume: 473
  start-page: 337
  year: 2011
  ident: ref_3
  article-title: Global quantification of mammalian gene expression control
  publication-title: Nature
  doi: 10.1038/nature10098
– volume: 150
  start-page: 97
  year: 1984
  ident: ref_18
  article-title: Influence of retinoic acid on protein synthesis and transport of L-methionine in cultured L cells
  publication-title: Exp. Cell Res.
  doi: 10.1016/0014-4827(84)90705-5
– volume: 9
  start-page: 2886
  year: 2018
  ident: ref_73
  article-title: The ubiquitin ligase UBR5 suppresses proteostasis collapse in pluripotent stem cells from Huntington’s disease patients
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-018-05320-3
– volume: 117
  start-page: 2567
  year: 2011
  ident: ref_112
  article-title: Haploinsufficiency for ribosomal protein genes causes selective activation of p53 in human erythroid progenitor cells
  publication-title: Blood
  doi: 10.1182/blood-2010-07-295238
– ident: ref_83
  doi: 10.7554/eLife.03077
– volume: 7
  start-page: 550
  year: 2011
  ident: ref_4
  article-title: The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells
  publication-title: Mol. Syst. Biol.
  doi: 10.1038/msb.2011.84
– volume: 343
  start-page: 298
  year: 2014
  ident: ref_60
  article-title: Changes in rRNA transcription influence proliferation and cell fate within a stem cell lineage
  publication-title: Science
  doi: 10.1126/science.1246384
– volume: 20
  start-page: 748
  year: 2014
  ident: ref_125
  article-title: Altered translation of GATA1 in Diamond-Blackfan anemia
  publication-title: Nat. Med.
  doi: 10.1038/nm.3557
– volume: 89
  start-page: 1235
  year: 2003
  ident: ref_84
  article-title: Characterization of mesenchymal stem cells isolated from murine bone marrow by negative selection
  publication-title: J. Cell. Biochem.
  doi: 10.1002/jcb.10594
– volume: 14
  start-page: 606
  year: 2014
  ident: ref_49
  article-title: Multifaceted regulation of somatic cell reprogramming by mRNA translational control
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2014.02.005
– volume: 26
  start-page: 3643
  year: 2019
  ident: ref_65
  article-title: Maintenance of Nucleolar Homeostasis by CBX4 Alleviates Senescence and Osteoarthritis
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2019.02.088
– volume: 145
  start-page: 383
  year: 2011
  ident: ref_150
  article-title: Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning
  publication-title: Cell
  doi: 10.1016/j.cell.2011.03.028
– volume: 30
  start-page: 1991
  year: 2016
  ident: ref_41
  article-title: Cap-independent translation by DAP5 controls cell fate decisions in human embryonic stem cells
  publication-title: Genes Dev.
  doi: 10.1101/gad.285239.116
– volume: 22
  start-page: 8101
  year: 2002
  ident: ref_122
  article-title: Transduction of growth or mitogenic signals into translational activation of TOP mRNAs is fully reliant on the phosphatidylinositol 3-kinase-mediated pathway but requires neither S6K1 nor rpS6 phosphorylation
  publication-title: Mol. Cell Biol.
  doi: 10.1128/MCB.22.23.8101-8113.2002
– ident: ref_109
  doi: 10.3390/cells8030229
– volume: 4
  start-page: e1086520
  year: 2015
  ident: ref_50
  article-title: LIF signal in mouse embryonic stem cells
  publication-title: JAKSTAT
– volume: 2
  start-page: 448
  year: 2008
  ident: ref_10
  article-title: A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2008.03.013
– volume: 22
  start-page: 1696
  year: 2019
  ident: ref_70
  article-title: Single-cell transcriptomic profiling of the aging mouse brain
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-019-0491-3
– volume: 5
  start-page: 1512
  year: 2009
  ident: ref_1
  article-title: Global signatures of protein and mRNA expression levels
  publication-title: Mol. Biosyst.
– volume: 19
  start-page: 900
  year: 2012
  ident: ref_32
  article-title: RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.2357
– volume: 497
  start-page: 776
  year: 2018
  ident: ref_92
  article-title: Ribosome biogenesis protein Urb2 regulates hematopoietic stem cells development via P53 pathway in zebrafish
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1016/j.bbrc.2018.02.153
– volume: 24
  start-page: 411
  year: 2013
  ident: ref_151
  article-title: Control of hematopoietic stem cell emergence by antagonistic functions of ribosomal protein paralogs
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2013.01.018
– volume: 14
  start-page: e1007226
  year: 2018
  ident: ref_91
  article-title: RNA helicase, DDX27 regulates skeletal muscle growth and regeneration by modulation of translational processes
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1007226
– volume: 131
  start-page: 557
  year: 2007
  ident: ref_143
  article-title: Functional specificity among ribosomal proteins regulates gene expression
  publication-title: Cell
  doi: 10.1016/j.cell.2007.08.037
– ident: ref_147
  doi: 10.1186/1471-2199-11-33
– volume: 26
  start-page: 3237
  year: 2008
  ident: ref_85
  article-title: Identification of stem cells during prepubertal spermatogenesis via monitoring of nucleostemin promoter activity
  publication-title: Stem Cells
  doi: 10.1634/stemcells.2008-0506
– volume: 352
  start-page: 1413
  year: 2016
  ident: ref_34
  article-title: Translational control by 5′-untranslated regions of eukaryotic mRNAs
  publication-title: Science
  doi: 10.1126/science.aad9868
– volume: 3
  start-page: e1025185
  year: 2015
  ident: ref_124
  article-title: Ribosomopathies: Global process, tissue specific defects
  publication-title: Rare Dis.
  doi: 10.1080/21675511.2015.1025185
– volume: 106
  start-page: 7507
  year: 2009
  ident: ref_37
  article-title: Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.0810916106
– volume: 9
  start-page: 692
  year: 2019
  ident: ref_68
  article-title: Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia
  publication-title: Front. Oncol.
  doi: 10.3389/fonc.2019.00692
– volume: 8
  start-page: 2045
  year: 2017
  ident: ref_69
  article-title: Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-017-02305-6
– volume: 132
  start-page: 5365
  year: 2005
  ident: ref_138
  article-title: Pelota controls self-renewal of germline stem cells by repressing a Bam-independent differentiation pathway
  publication-title: Development
  doi: 10.1242/dev.02151
– volume: 13
  start-page: 745
  year: 2013
  ident: ref_132
  article-title: Human epidermal stem cell function is regulated by circadian oscillations
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2013.09.004
– volume: 147
  start-page: 789
  year: 2011
  ident: ref_7
  article-title: Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes
  publication-title: Cell
  doi: 10.1016/j.cell.2011.10.002
– ident: ref_76
  doi: 10.7554/eLife.03573
– volume: 23
  start-page: 2862
  year: 2014
  ident: ref_94
  article-title: Lrrc34, a novel nucleolar protein, interacts with npm1 and ncl and has an impact on pluripotent stem cells
  publication-title: Stem Cells Dev.
  doi: 10.1089/scd.2013.0470
– volume: 12
  start-page: 368
  year: 2019
  ident: ref_102
  article-title: FMRP Interacts with C/D Box snoRNA in the Nucleus and Regulates Ribosomal RNA Methylation
  publication-title: iScience
  doi: 10.1016/j.isci.2019.01.026
– ident: ref_93
  doi: 10.1002/1873-3468.13559
– volume: 30
  start-page: 1698
  year: 2016
  ident: ref_26
  article-title: The rate of protein synthesis in hematopoietic stem cells is limited partly by 4E-BPs
  publication-title: Genes Dev
  doi: 10.1101/gad.282756.116
– volume: 29
  start-page: 214
  year: 2009
  ident: ref_114
  article-title: Fragile X mental retardation protein FMRP binds mRNAs in the nucleus
  publication-title: Mol. Cell Biol.
  doi: 10.1128/MCB.01377-08
– volume: 21
  start-page: 2630
  year: 2012
  ident: ref_15
  article-title: An elaborate regulation of Mammalian target of rapamycin activity is required for somatic cell reprogramming induced by defined transcription factors
  publication-title: Stem Cells Dev.
  doi: 10.1089/scd.2012.0015
– volume: 18
  start-page: 276
  year: 2016
  ident: ref_24
  article-title: Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2015.11.004
– volume: 18
  start-page: 51
  year: 2018
  ident: ref_59
  article-title: Ribosome biogenesis in cancer: New players and therapeutic avenues
  publication-title: Nat. Rev. Cancer
  doi: 10.1038/nrc.2017.104
– volume: 147
  start-page: 1431
  year: 1999
  ident: ref_54
  article-title: RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules
  publication-title: J. Cell. Biol.
  doi: 10.1083/jcb.147.7.1431
– volume: 509
  start-page: 49
  year: 2014
  ident: ref_25
  article-title: Haematopoietic stem cells require a highly regulated protein synthesis rate
  publication-title: Nature
  doi: 10.1038/nature13035
– volume: 13
  start-page: 56
  year: 2003
  ident: ref_36
  article-title: Eukaryotic translation initiation factors and regulators
  publication-title: Curr. Opin. Struct. Biol.
  doi: 10.1016/S0959-440X(03)00009-5
– volume: 18
  start-page: 79
  year: 2016
  ident: ref_28
  article-title: Phosphorylation of eIF2alpha Is a Translational Control Mechanism Regulating Muscle Stem Cell Quiescence and Self-Renewal
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2015.09.020
– volume: 19
  start-page: 791
  year: 2018
  ident: ref_110
  article-title: Translation deregulation in human disease
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/s41580-018-0034-x
– volume: 24
  start-page: 700
  year: 2017
  ident: ref_160
  article-title: Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.3442
– volume: 36
  start-page: 1073
  year: 2004
  ident: ref_39
  article-title: Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise
  publication-title: Nat. Genet.
  doi: 10.1038/ng1429
– volume: 156
  start-page: 950
  year: 2014
  ident: ref_134
  article-title: Dom34 rescues ribosomes in 3′ untranslated regions
  publication-title: Cell
  doi: 10.1016/j.cell.2014.02.006
– volume: 27
  start-page: 1498
  year: 2017
  ident: ref_146
  article-title: RPL10L Is Required for Male Meiotic Division by Compensating for RPL10 during Meiotic Sex Chromosome Inactivation in Mice
  publication-title: Curr. Biol.
  doi: 10.1016/j.cub.2017.04.017
– volume: 127
  start-page: 3885
  year: 2014
  ident: ref_89
  article-title: Turning a new page on nucleostemin and self-renewal
  publication-title: J. Cell Sci.
– volume: 17
  start-page: 1152
  year: 2001
  ident: ref_140
  article-title: Differential expression of genes coding for ribosomal proteins in different human tissues
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/17.12.1152
– volume: 11
  start-page: 113
  year: 2010
  ident: ref_35
  article-title: The mechanism of eukaryotic translation initiation and principles of its regulation
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/nrm2838
– volume: 64
  start-page: 393
  year: 2018
  ident: ref_57
  article-title: Feedback regulation of ribosome assembly
  publication-title: Curr. Genet.
  doi: 10.1007/s00294-017-0764-x
– volume: 54
  start-page: 407
  year: 2014
  ident: ref_101
  article-title: Fragile X mental retardation protein regulates translation by binding directly to the ribosome
  publication-title: Mol. Cell.
  doi: 10.1016/j.molcel.2014.03.023
– volume: 115
  start-page: E11397
  year: 2018
  ident: ref_100
  article-title: Regulatory discrimination of mRNAs by FMRP controls mouse adult neural stem cell differentiation
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1809588115
– volume: 167
  start-page: 27
  year: 2004
  ident: ref_38
  article-title: Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200408003
– ident: ref_31
  doi: 10.1371/journal.pgen.1002403
– volume: 284
  start-page: 4968
  year: 2009
  ident: ref_81
  article-title: Critical role of nucleostemin in pre-rRNA processing
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M804594200
– volume: 149
  start-page: 213
  year: 2015
  ident: ref_137
  article-title: Pelota mediates gonocyte maturation and maintenance of spermatogonial stem cells in mouse testes
  publication-title: Reproduction
  doi: 10.1530/REP-14-0391
– volume: 9
  start-page: 301
  year: 2018
  ident: ref_72
  article-title: Key genes and integrated modules in hematopoietic differentiation of human embryonic stem cells: A comprehensive bioinformatic analysis
  publication-title: Stem Cell Res. Ther.
  doi: 10.1186/s13287-018-1050-7
– volume: 2
  start-page: 125
  year: 2018
  ident: ref_105
  article-title: Nucleolar Stress: Hallmarks, sensing mechanism and diseases
  publication-title: Cell Stress
  doi: 10.15698/cst2018.06.139
– ident: ref_108
  doi: 10.1126/science.aan2755
– volume: 441
  start-page: 196
  year: 2013
  ident: ref_88
  article-title: Nucleostemin is indispensable for the maintenance and genetic stability of hematopoietic stem cells
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1016/j.bbrc.2013.10.032
– volume: 521
  start-page: 91
  year: 2013
  ident: ref_148
  article-title: Identification and expression of an autosomal paralogue of ribosomal protein S4, X-linked, in mice: Potential involvement of testis-specific ribosomal proteins in translation and spermatogenesis
  publication-title: Gene
  doi: 10.1016/j.gene.2013.02.040
– ident: ref_123
  doi: 10.1093/nar/gkz637
– volume: 305 ( Pt 2)
  start-page: 391
  year: 1995
  ident: ref_17
  article-title: Effect of retinoic acid on protein synthesis by foetal bovine chondrocytes in high-density culture: Down-regulation of the glucose-regulated protein, GRP-78, and type II collagen
  publication-title: Biochem. J.
  doi: 10.1042/bj3050391
– volume: 149
  start-page: 274
  year: 2012
  ident: ref_47
  article-title: mTOR signaling in growth control and disease
  publication-title: Cell
  doi: 10.1016/j.cell.2012.03.017
– volume: 431
  start-page: 111
  year: 2017
  ident: ref_133
  article-title: Stem cells and the circadian clock
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2017.09.012
– volume: 23
  start-page: 1853
  year: 2018
  ident: ref_64
  article-title: NoRC Recruitment by H2A.X Deposition at rRNA Gene Promoter Limits Embryonic Stem Cell Proliferation
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2018.04.023
– volume: 29
  start-page: 2004
  year: 2015
  ident: ref_16
  article-title: Role of the small subunit processome in the maintenance of pluripotent stem cells
  publication-title: Genes Dev.
  doi: 10.1101/gad.267112.115
– volume: 583
  start-page: 3966
  year: 2009
  ident: ref_2
  article-title: Correlation of mRNA and protein in complex biological samples
  publication-title: FEBS Lett.
  doi: 10.1016/j.febslet.2009.10.036
– ident: ref_80
  doi: 10.1242/dev.162636
– volume: 46
  start-page: 518
  year: 2012
  ident: ref_135
  article-title: Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3′ end of aberrant mRNA
  publication-title: Mol Cell
  doi: 10.1016/j.molcel.2012.03.013
– ident: ref_55
  doi: 10.1016/j.stem.2019.08.018
– volume: 19
  start-page: 18
  year: 2018
  ident: ref_131
  article-title: Circadian clocks: From stem cells to tissue homeostasis and regeneration
  publication-title: EMBO Rep.
  doi: 10.15252/embr.201745130
– volume: 5
  start-page: 433
  year: 2013
  ident: ref_22
  article-title: mTORC1 targets the translational repressor 4E-BP2, but not S6 kinase 1/2, to regulate neural stem cell self-renewal in vivo
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2013.09.017
– volume: 67
  start-page: 71
  year: 2017
  ident: ref_162
  article-title: Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide
  publication-title: Mol. Cell
  doi: 10.1016/j.molcel.2017.05.021
– volume: 24
  start-page: 1803
  year: 2018
  ident: ref_62
  article-title: Mouse adult hematopoietic stem cells actively synthesize ribosomal RNA
  publication-title: RNA
  doi: 10.1261/rna.067843.118
– volume: 27
  start-page: 2582
  year: 2015
  ident: ref_126
  article-title: The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading
  publication-title: Plant. Cell
  doi: 10.1105/tpc.15.00546
– volume: 25
  start-page: 7120
  year: 2005
  ident: ref_116
  article-title: A family of mammalian E3 ubiquitin ligases that contain the UBR box motif and recognize N-degrons
  publication-title: Mol. Cell Biol.
  doi: 10.1128/MCB.25.16.7120-7136.2005
– volume: 25
  start-page: 7534
  year: 2005
  ident: ref_115
  article-title: Human histone chaperone nucleophosmin enhances acetylation-dependent chromatin transcription
  publication-title: Mol. Cell Biol.
  doi: 10.1128/MCB.25.17.7534-7545.2005
– volume: 38
  start-page: 1027
  year: 2010
  ident: ref_51
  article-title: The ground state of pluripotency
  publication-title: Biochem. Soc. Trans.
  doi: 10.1042/BST0381027
– volume: 462
  start-page: 358
  year: 2009
  ident: ref_6
  article-title: Systems-level dynamic analyses of fate change in murine embryonic stem cells
  publication-title: Nature
  doi: 10.1038/nature08575
– volume: 20
  start-page: 116
  year: 2019
  ident: ref_58
  article-title: Ribosome assembly coming into focus
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/s41580-018-0078-y
– volume: 114
  start-page: 12934
  year: 2017
  ident: ref_156
  article-title: Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1707674114
– volume: 210
  start-page: 2351
  year: 2013
  ident: ref_78
  article-title: Notchless-dependent ribosome synthesis is required for the maintenance of adult hematopoietic stem cells
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20122019
– volume: 25
  start-page: 102
  year: 2017
  ident: ref_129
  article-title: Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver
  publication-title: Cell Metab.
  doi: 10.1016/j.cmet.2016.10.003
– volume: 140
  start-page: 4860
  year: 2013
  ident: ref_71
  article-title: Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis
  publication-title: Development
  doi: 10.1242/dev.099010
– ident: ref_128
  doi: 10.7554/eLife.46919
– volume: 13
  start-page: 865
  year: 2015
  ident: ref_161
  article-title: Differential Stoichiometry among Core Ribosomal Proteins
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2015.09.056
– volume: 8
  start-page: 1013
  year: 2015
  ident: ref_107
  article-title: Ribosomopathies: How a common root can cause a tree of pathologies
  publication-title: Dis Model Mech.
  doi: 10.1242/dmm.020529
– volume: 14
  start-page: 1138
  year: 2017
  ident: ref_155
  article-title: Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function
  publication-title: RNA Biol.
  doi: 10.1080/15476286.2016.1259781
– volume: 30
  start-page: 447
  year: 2008
  ident: ref_45
  article-title: DAP5 promotes cap-independent translation of Bcl-2 and CDK1 to facilitate cell survival during mitosis
  publication-title: Mol. Cell.
  doi: 10.1016/j.molcel.2008.03.018
– volume: 9
  start-page: 689
  year: 2013
  ident: ref_5
  article-title: Protein synthesis rate is the predominant regulator of protein expression during differentiation
  publication-title: Mol. Syst. Biol.
  doi: 10.1038/msb.2013.47
– volume: 6
  start-page: e1000898
  year: 2010
  ident: ref_97
  article-title: Fragile x mental retardation protein regulates proliferation and differentiation of adult neural stem/progenitor cells
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1000898
– volume: 32
  start-page: 3099
  year: 2014
  ident: ref_74
  article-title: Biosynthesis of ribosomal RNA in nucleoli regulates pluripotency and differentiation ability of pluripotent stem cells
  publication-title: Stem Cells
  doi: 10.1002/stem.1825
– volume: 33
  start-page: 2020
  year: 2014
  ident: ref_30
  article-title: Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders
  publication-title: EMBO J.
  doi: 10.15252/embj.201489282
– volume: 374
  start-page: 32
  year: 2013
  ident: ref_99
  article-title: Neural differentiation of Fragile X human Embryonic Stem Cells reveals abnormal patterns of development despite successful neurogenesis
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2012.11.031
– volume: 9
  start-page: 1351
  year: 2010
  ident: ref_145
  article-title: Proteomic analysis of rodent ribosomes revealed heterogeneity including ribosomal proteins L10-like, L22-like 1, and L39-like
  publication-title: J. Proteome Res.
  doi: 10.1021/pr9008964
– volume: 16
  start-page: 2991
  year: 2002
  ident: ref_87
  article-title: A nucleolar mechanism controlling cell proliferation in stem cells and cancer cells
  publication-title: Genes Dev.
  doi: 10.1101/gad.55671
– volume: 84
  start-page: 723
  year: 2014
  ident: ref_27
  article-title: An eIF4E1/4E-T complex determines the genesis of neurons from precursors by translationally repressing a proneurogenic transcription program
  publication-title: Neuron
  doi: 10.1016/j.neuron.2014.10.022
– volume: 25
  start-page: 1848
  year: 2015
  ident: ref_130
  article-title: Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames
  publication-title: Genome Res.
  doi: 10.1101/gr.195404.115
– volume: 20
  start-page: 8635
  year: 2000
  ident: ref_40
  article-title: Upstream open reading frames as regulators of mRNA translation
  publication-title: Mol. Cell. Biol.
  doi: 10.1128/MCB.20.23.8635-8642.2000
– volume: 27
  start-page: 1244
  year: 2009
  ident: ref_77
  article-title: Ly-1 antibody reactive clone is an important nucleolar protein for control of self-renewal and differentiation in embryonic stem cells
  publication-title: Stem Cells
  doi: 10.1002/stem.55
– volume: 22
  start-page: 369
  year: 2018
  ident: ref_29
  article-title: The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.02.004
– volume: 17
  start-page: 165
  year: 2015
  ident: ref_66
  article-title: Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2015.06.002
– ident: ref_61
  doi: 10.1371/journal.pone.0157276
– volume: 286
  start-page: 43370
  year: 2011
  ident: ref_75
  article-title: Nucleolin maintains embryonic stem cell self-renewal by suppression of p53 protein-dependent pathway
  publication-title: J. Biol. Chem
  doi: 10.1074/jbc.M111.225185
– volume: 18
  start-page: 545
  year: 2017
  ident: ref_152
  article-title: Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2016.12.034
– volume: 22
  start-page: 543
  year: 2018
  ident: ref_117
  article-title: Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation
  publication-title: Cell Stem Cell
  doi: 10.1016/j.stem.2018.03.002
– volume: 2
  start-page: 815
  year: 2010
  ident: ref_96
  article-title: Core transcription factors, Oct4, Sox2 and Nanog, individually form complexes with nucleophosmin (Npm1) to control embryonic stem (ES) cell fate determination
  publication-title: Aging (Albany NY)
  doi: 10.18632/aging.100222
– ident: ref_103
  doi: 10.3390/biom8040123
– volume: 165
  start-page: 535
  year: 2016
  ident: ref_8
  article-title: On the Dependency of Cellular Protein Levels on mRNA Abundance
  publication-title: Cell
  doi: 10.1016/j.cell.2016.03.014
– volume: 113
  start-page: 47
  year: 1982
  ident: ref_19
  article-title: Effects of retinoic acid on protein synthesis in cultured melanoma cells
  publication-title: J. Cell Physiol.
  doi: 10.1002/jcp.1041130110
– volume: 43
  start-page: 3764
  year: 2015
  ident: ref_44
  article-title: DAP5 associates with eIF2beta and eIF4AI to promote Internal Ribosome Entry Site driven translation
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv205
– volume: 12
  start-page: 379
  year: 2002
  ident: ref_119
  article-title: The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes
  publication-title: Genome Res.
  doi: 10.1101/gr.214202
SSID ssj0000816105
Score 2.4078245
SecondaryResourceType review_article
Snippet Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple...
SourceID doaj
pubmedcentral
hal
proquest
pubmed
crossref
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
Enrichment Source
StartPage 497
SubjectTerms Adult Stem Cells - metabolism
Animals
Cell Differentiation
Embryonic Stem Cells - metabolism
Homeostasis
Humans
Life Sciences
Mice
Protein Biosynthesis
Review
ribosomal proteins
Ribosomal Proteins - metabolism
ribosome biogenesis
ribosomes
Ribosomes - metabolism
RNA Processing, Post-Transcriptional
RNA, Messenger - metabolism
RNA, Ribosomal - metabolism
rrna modifications
specialized ribosomes
stem cells
translational regulation
SummonAdditionalLinks – databaseName: DOAJ Directory of Open Access Journals
  dbid: DOA
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1LS8QwEB5kQfAivq0vquhJFtNt8-hRF2UR9eADvJUkTdgFtyvuruC_d6atS1cRL17bkKYzSeabyeQbgGMfaa1wb2xzbYhUG9ecpmgTE4Z1nOWKlbwFt3ei95RcP_PnRqkvygmr6IErwZ3l2ksW5YZFDo2f41pryaUUFldqzmXJBIo2r-FMlXuwQiTDeJXpHqNff0Zx8HFKV0GJ36lhg0qqfrQsfUqE_IkyvydLNqzP1Qos17AxPK-GuwoLrliDxaqQ5Mc6sPuBGY1HQxfqIg9L-_NSR_nCbpWMHg6K8GHihmGXhrgBT1eXj91eu66F0LboQ0zaXiSpSylcgxhJCfRbEWkpNP9K5FIwIlrMJfNo372yRCJGS1l1XC5MLL1h8Sa0ilHhtiE0iFls4j0X2KmPXZpbbWzq0LXSibU2gNMv6WS2JgqnehUvGToMJMusKcsATmatXyuCjF_aXZCgZ22I1rp8gMrOamVnfyk7gCNU01wfvfObjJ7RiSed8r1HARx-aTHDtUKD0IUbTcdZJxY8UjgVVQBblVZnfcU4iwgNBSDn9D33sfk3xaBf8nFLhiAwETv_8Ye7sNQhj54uzUd70Jq8Td0-wp6JOShn-Ce1UP4l
  priority: 102
  providerName: Directory of Open Access Journals
Title Ribosome and Translational Control in Stem Cells
URI https://www.ncbi.nlm.nih.gov/pubmed/32098201
https://www.proquest.com/docview/2365189598
https://hal.science/hal-03811099
https://pubmed.ncbi.nlm.nih.gov/PMC7072746
https://doaj.org/article/daf701db01e741e5aaa75776c538d574
Volume 9
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwjV3da9swED-6lsJexj66zl0XvLE9DW_ylyQ_jNGGljDWMroF-mYkWVoDqb0m6Vj_-97JTqj7AXt1hCJOOt3vdz7_DuC9i5WSeDdGudIkqo0-pyjbxLhmiTW5ZF634OiYj8bZt9P8dA2W3UY7A87vpXbUT2o8m376d3H1FR3-CzFOpOyfKcU9L-grz0I8gg2MSYJ6GRx1QN_fyRKRja9nTPBMRxmymrYK_s4EvfjkZfwx6pxRkeRdBHq7kPJGZDp8Ck86SBnutWfgGazZ-jlstk0mr14AO5noZt6c21DVVehj07TLAIbDtlA9nNThz4U9D4e0xC0YHx78Go6irk9CZJBfLCLHs8IWlMpB_CQ5clpEYRKhgeSV4IxEGCvBHMZ-Jw0JjJGby8RWXKfCaZa-hPW6qe0rCDWazmTO5RwndaktKqO0KSzSLpUZYwL4uLROaToRceplMS2RTJAty5u2DODDavSfVjzjgXH7ZOjVGJK89g-a2e-y86CyUk6wuNIstoiCbK6UErkQ3OCVXeUiC-AdblNvjtHe95Ke0dtQegP4Nw7g7XIXS_QjWoSqbXM5L5OU57HEYyoD2G53dTVXmrCCkFIAorffvT_r_1JPzrxWt2AIEDO-8z-Lew2PE2Lz9MF8vAvri9mlfYOQZ6EHsLF_cPzjZOBTBgN_tq8BFM_-xA
linkProvider Scholars Portal
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Ribosome+and+Translational+Control+in+Stem+Cells&rft.jtitle=Cells+%28Basel%2C+Switzerland%29&rft.au=Gabut%2C+Mathieu&rft.au=Bourdelais%2C+Fleur&rft.au=Durand%2C+S%C3%A9bastien&rft.date=2020-02-21&rft.pub=MDPI&rft.issn=2073-4409&rft.eissn=2073-4409&rft.volume=9&rft.issue=2&rft_id=info:doi/10.3390%2Fcells9020497&rft.externalDBID=HAS_PDF_LINK&rft.externalDocID=oai_HAL_hal_03811099v1
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2073-4409&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2073-4409&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2073-4409&client=summon