Ribosome and Translational Control in Stem Cells
Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic...
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Published in | Cells (Basel, Switzerland) Vol. 9; no. 2; p. 497 |
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Main Authors | , , |
Format | Journal Article |
Language | English |
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21.02.2020
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Abstract | Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate. |
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AbstractList | Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate. Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate.Embryonic stem cells (ESCs) and adult stem cells (ASCs) possess the remarkable capacity to self-renew while remaining poised to differentiate into multiple progenies in the context of a rapidly developing embryo or in steady-state tissues, respectively. This ability is controlled by complex genetic programs, which are dynamically orchestrated at different steps of gene expression, including chromatin remodeling, mRNA transcription, processing, and stability. In addition to maintaining stem cell homeostasis, these molecular processes need to be rapidly rewired to coordinate complex physiological modifications required to redirect cell fate in response to environmental clues, such as differentiation signals or tissue injuries. Although chromatin remodeling and mRNA expression have been extensively studied in stem cells, accumulating evidence suggests that stem cell transcriptomes and proteomes are poorly correlated and that stem cell properties require finely tuned protein synthesis. In addition, many studies have shown that the biogenesis of the translation machinery, the ribosome, is decisive for sustaining ESC and ASC properties. Therefore, these observations emphasize the importance of translational control in stem cell homeostasis and fate decisions. In this review, we will provide the most recent literature describing how ribosome biogenesis and translational control regulate stem cell functions and are crucial for accommodating proteome remodeling in response to changes in stem cell fate. |
Author | Durand, Sébastien Bourdelais, Fleur Gabut, Mathieu |
AuthorAffiliation | 2 Université Claude Bernard Lyon 1, 69100 Villeurbanne, France 1 Equipe ‘Transcriptome Diversity in Stem Cells’, Cancer Cell Plasticity Department, INSERM 1052, CNRS 5286, Cancer Research Center of Lyon, Centre Léon Bérard, 69008 Lyon, France fleur.bourdelais@gmail.com (F.B.) |
AuthorAffiliation_xml | – name: 1 Equipe ‘Transcriptome Diversity in Stem Cells’, Cancer Cell Plasticity Department, INSERM 1052, CNRS 5286, Cancer Research Center of Lyon, Centre Léon Bérard, 69008 Lyon, France fleur.bourdelais@gmail.com (F.B.) – name: 2 Université Claude Bernard Lyon 1, 69100 Villeurbanne, France |
Author_xml | – sequence: 1 givenname: Mathieu orcidid: 0000-0001-7343-5361 surname: Gabut fullname: Gabut, Mathieu – sequence: 2 givenname: Fleur orcidid: 0000-0001-7394-8714 surname: Bourdelais fullname: Bourdelais, Fleur – sequence: 3 givenname: Sébastien orcidid: 0000-0002-9960-9099 surname: Durand fullname: Durand, Sébastien |
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Cites_doi | 10.1016/j.stem.2015.07.002 10.1096/fj.201700780R 10.1038/cdd.2015.57 10.1042/BST0340012 10.1016/j.scr.2014.04.011 10.1093/nar/gkw547 10.4161/nucl.32235 10.1371/journal.pone.0011779 10.1038/nsmb.2638 10.1038/nm.2336 10.1007/s12015-011-9286-y 10.1093/nar/gkw810 10.4161/rna.27427 10.4161/cc.11.3.19002 10.1089/cell.2010.0011 10.1371/journal.pone.0139076 10.1186/s13059-016-1104-z 10.1042/BST20160117 10.1096/fj.201802536RR 10.1104/pp.010265 10.1080/15476286.2019.1670598 10.1111/j.1474-9726.2011.00722.x 10.4161/23723556.2014.983755 10.1083/jcb.201103071 10.1038/nature20578 10.1074/jbc.M109.013342 10.1016/j.febslet.2014.03.024 10.1038/s41588-019-0502-z 10.1016/j.bbagrm.2014.08.015 10.1038/nature18282 10.1073/pnas.082102499 10.1002/wrna.1524 10.1038/s41389-018-0044-8 10.1093/nar/gkm1007 10.1038/s41598-019-39530-6 10.1371/journal.pbio.1001455 10.1016/j.cell.2018.03.008 10.1186/gb-2009-10-1-r2 10.1073/pnas.1418845112 10.1038/nature10098 10.1016/0014-4827(84)90705-5 10.1038/s41467-018-05320-3 10.1182/blood-2010-07-295238 10.7554/eLife.03077 10.1038/msb.2011.84 10.1126/science.1246384 10.1038/nm.3557 10.1002/jcb.10594 10.1016/j.stem.2014.02.005 10.1016/j.celrep.2019.02.088 10.1016/j.cell.2011.03.028 10.1101/gad.285239.116 10.1128/MCB.22.23.8101-8113.2002 10.3390/cells8030229 10.1016/j.stem.2008.03.013 10.1038/s41593-019-0491-3 10.1038/nsmb.2357 10.1016/j.bbrc.2018.02.153 10.1016/j.devcel.2013.01.018 10.1371/journal.pgen.1007226 10.1016/j.cell.2007.08.037 10.1186/1471-2199-11-33 10.1634/stemcells.2008-0506 10.1126/science.aad9868 10.1080/21675511.2015.1025185 10.1073/pnas.0810916106 10.3389/fonc.2019.00692 10.1038/s41467-017-02305-6 10.1242/dev.02151 10.1016/j.stem.2013.09.004 10.1016/j.cell.2011.10.002 10.7554/eLife.03573 10.1089/scd.2013.0470 10.1016/j.isci.2019.01.026 10.1002/1873-3468.13559 10.1101/gad.282756.116 10.1128/MCB.01377-08 10.1089/scd.2012.0015 10.1016/j.stem.2015.11.004 10.1038/nrc.2017.104 10.1083/jcb.147.7.1431 10.1038/nature13035 10.1016/S0959-440X(03)00009-5 10.1016/j.stem.2015.09.020 10.1038/s41580-018-0034-x 10.1038/nsmb.3442 10.1038/ng1429 10.1016/j.cell.2014.02.006 10.1016/j.cub.2017.04.017 10.1093/bioinformatics/17.12.1152 10.1038/nrm2838 10.1007/s00294-017-0764-x 10.1016/j.molcel.2014.03.023 10.1073/pnas.1809588115 10.1083/jcb.200408003 10.1371/journal.pgen.1002403 10.1074/jbc.M804594200 10.1530/REP-14-0391 10.1186/s13287-018-1050-7 10.15698/cst2018.06.139 10.1126/science.aan2755 10.1016/j.bbrc.2013.10.032 10.1016/j.gene.2013.02.040 10.1093/nar/gkz637 10.1042/bj3050391 10.1016/j.cell.2012.03.017 10.1016/j.ydbio.2017.09.012 10.1016/j.celrep.2018.04.023 10.1101/gad.267112.115 10.1016/j.febslet.2009.10.036 10.1242/dev.162636 10.1016/j.molcel.2012.03.013 10.1016/j.stem.2019.08.018 10.15252/embr.201745130 10.1016/j.celrep.2013.09.017 10.1016/j.molcel.2017.05.021 10.1261/rna.067843.118 10.1105/tpc.15.00546 10.1128/MCB.25.16.7120-7136.2005 10.1128/MCB.25.17.7534-7545.2005 10.1042/BST0381027 10.1038/nature08575 10.1038/s41580-018-0078-y 10.1073/pnas.1707674114 10.1084/jem.20122019 10.1016/j.cmet.2016.10.003 10.1242/dev.099010 10.7554/eLife.46919 10.1016/j.celrep.2015.09.056 10.1242/dmm.020529 10.1080/15476286.2016.1259781 10.1016/j.molcel.2008.03.018 10.1038/msb.2013.47 10.1371/journal.pgen.1000898 10.1002/stem.1825 10.15252/embj.201489282 10.1016/j.ydbio.2012.11.031 10.1021/pr9008964 10.1101/gad.55671 10.1016/j.neuron.2014.10.022 10.1101/gr.195404.115 10.1128/MCB.20.23.8635-8642.2000 10.1002/stem.55 10.1016/j.stem.2018.02.004 10.1016/j.stem.2015.06.002 10.1371/journal.pone.0157276 10.1074/jbc.M111.225185 10.1016/j.celrep.2016.12.034 10.1016/j.stem.2018.03.002 10.18632/aging.100222 10.3390/biom8040123 10.1016/j.cell.2016.03.014 10.1002/jcp.1041130110 10.1093/nar/gkv205 10.1101/gr.214202 |
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References | Dierickx (ref_131) 2018; 19 ref_93 Kondrashov (ref_150) 2011; 145 Yu (ref_90) 2019; 33 Luhrig (ref_94) 2014; 23 Kim (ref_114) 2009; 29 ref_12 Yoshihama (ref_119) 2002; 12 Penalva (ref_1) 2009; 5 Yoffe (ref_41) 2016; 30 Baddoo (ref_84) 2003; 89 Danilova (ref_107) 2015; 8 Kwon (ref_67) 2013; 20 Schwanhausser (ref_3) 2011; 473 Morris (ref_40) 2000; 20 Sfakianos (ref_53) 2016; 44 Hartman (ref_22) 2013; 5 ref_128 Marcel (ref_157) 2015; 2 Qu (ref_86) 2012; 197 ref_120 Easley (ref_11) 2010; 12 ref_123 Yang (ref_75) 2011; 286 Mendell (ref_39) 2004; 36 Raju (ref_137) 2015; 149 Ohtsuka (ref_50) 2015; 4 Corsini (ref_117) 2018; 22 Shi (ref_162) 2017; 67 Tsuboi (ref_135) 2012; 46 Fichelson (ref_63) 2009; 25 Sugihara (ref_148) 2013; 521 Li (ref_77) 2009; 27 Liu (ref_8) 2016; 165 Munoz (ref_4) 2011; 7 Ximerakis (ref_70) 2019; 22 Slavov (ref_161) 2015; 13 ref_159 Lu (ref_6) 2009; 462 Jouffe (ref_127) 2013; 11 You (ref_16) 2015; 29 Chen (ref_101) 2014; 54 Hinnebusch (ref_34) 2016; 352 Ren (ref_65) 2019; 26 Dutt (ref_112) 2011; 117 Sloan (ref_155) 2017; 14 ref_76 Liu (ref_100) 2018; 115 Hebras (ref_158) 2020; 17 Ohmura (ref_85) 2008; 26 Sugihara (ref_145) 2010; 9 Bennett (ref_91) 2018; 14 Xi (ref_138) 2005; 132 Missra (ref_126) 2015; 27 Balasubramanian (ref_144) 2009; 10 Zhang (ref_151) 2013; 24 Zhao (ref_23) 2015; 17 Jarzebowski (ref_62) 2018; 24 Cai (ref_66) 2015; 17 Biechele (ref_48) 2016; 540 Wong (ref_149) 2014; 11 Barakat (ref_142) 2001; 127 ref_83 ref_147 Signer (ref_26) 2016; 30 ref_80 Luo (ref_97) 2010; 6 Lotan (ref_19) 1982; 113 Saha (ref_68) 2019; 9 Li (ref_72) 2018; 9 Gowda (ref_102) 2019; 12 Armistead (ref_106) 2014; 588 Athanasiadis (ref_69) 2017; 8 Kong (ref_33) 2018; 32 Koziorowska (ref_18) 1984; 150 Nyamsuren (ref_139) 2014; 13 Pelletier (ref_59) 2018; 18 Cai (ref_92) 2018; 497 Wray (ref_51) 2010; 38 Kedersha (ref_54) 1999; 147 Ludwig (ref_125) 2014; 20 James (ref_104) 2014; 5 Yang (ref_105) 2018; 2 Hamilton (ref_118) 2006; 34 Guzikowski (ref_52) 2019; 10 Incarnato (ref_153) 2017; 45 ref_55 Macrae (ref_29) 2018; 22 Wang (ref_129) 2017; 25 Eleuteri (ref_64) 2018; 23 Guo (ref_98) 2011; 17 Marchand (ref_154) 2016; 44 Bortoluzzi (ref_140) 2001; 17 Yamashita (ref_88) 2013; 441 Stedman (ref_79) 2015; 22 ref_61 Tahmasebi (ref_49) 2014; 14 Calvo (ref_37) 2009; 106 Swaminathan (ref_115) 2005; 25 Shani (ref_42) 2002; 99 Sanchez (ref_24) 2016; 18 Recher (ref_71) 2013; 140 Jiang (ref_146) 2017; 27 Romanova (ref_81) 2009; 284 Novak (ref_20) 2012; 8 Sampath (ref_10) 2008; 2 Klinge (ref_58) 2019; 20 Zhang (ref_60) 2014; 343 Tuorto (ref_32) 2012; 19 Llanos (ref_111) 2012; 11 Freyria (ref_17) 1995; 305 ( Pt 2) Jackson (ref_35) 2010; 11 Weger (ref_133) 2017; 431 Romanova (ref_82) 2009; 284 Li (ref_136) 2019; 9 Komili (ref_143) 2007; 131 Ingolia (ref_7) 2011; 147 He (ref_15) 2012; 21 Zhang (ref_152) 2017; 18 Erales (ref_156) 2017; 114 Signer (ref_25) 2014; 509 Tasaki (ref_116) 2005; 25 Stolovich (ref_122) 2002; 22 Gingras (ref_46) 2004; 279 Ferretti (ref_160) 2017; 24 Chen (ref_14) 2011; 10 Laplante (ref_47) 2012; 149 ref_31 Janich (ref_130) 2015; 25 Johansson (ref_96) 2010; 2 Zismanov (ref_28) 2016; 18 Meyuhas (ref_121) 2015; 1849 Marash (ref_45) 2008; 30 Guydosh (ref_134) 2014; 156 Liberman (ref_44) 2015; 43 Koyuncu (ref_73) 2018; 9 Yelick (ref_124) 2015; 3 Lewis (ref_43) 2008; 36 ref_103 Janich (ref_132) 2013; 13 ref_108 Yang (ref_27) 2014; 84 Lu (ref_38) 2004; 167 ref_109 Kristensen (ref_5) 2013; 9 Takada (ref_74) 2014; 32 Guimaraes (ref_141) 2016; 17 Tahmasebi (ref_110) 2018; 19 Tsai (ref_87) 2002; 16 Telias (ref_99) 2013; 374 Nachmani (ref_95) 2019; 51 Guzzi (ref_13) 2018; 173 Souilhol (ref_78) 2013; 210 Blanco (ref_21) 2016; 534 Fortier (ref_113) 2015; 112 Tsai (ref_89) 2014; 127 ref_9 Sonenberg (ref_36) 2003; 13 Begley (ref_57) 2018; 64 Blanco (ref_30) 2014; 33 Bastide (ref_56) 2018; 7 Maier (ref_2) 2009; 583 |
References_xml | – volume: 17 start-page: 329 year: 2015 ident: ref_23 article-title: Single-Cell Transcriptomics Reveals a Population of Dormant Neural Stem Cells that Become Activated upon Brain Injury publication-title: Cell Stem Cell doi: 10.1016/j.stem.2015.07.002 – volume: 32 start-page: 1108 year: 2018 ident: ref_33 article-title: The histone demethylase KDM5A is required for the repression of astrocytogenesis and regulated by the translational machinery in neural progenitor cells publication-title: FASEB J. doi: 10.1096/fj.201700780R – volume: 22 start-page: 1865 year: 2015 ident: ref_79 article-title: Ribosome biogenesis dysfunction leads to p53-mediated apoptosis and goblet cell differentiation of mouse intestinal stem/progenitor cells publication-title: Cell Death Differ. doi: 10.1038/cdd.2015.57 – ident: ref_9 – volume: 34 start-page: 12 year: 2006 ident: ref_118 article-title: TOPs and their regulation publication-title: Biochem. Soc. Trans. doi: 10.1042/BST0340012 – volume: 13 start-page: 61 year: 2014 ident: ref_139 article-title: Pelota regulates the development of extraembryonic endoderm through activation of bone morphogenetic protein (BMP) signaling publication-title: Stem Cell Res doi: 10.1016/j.scr.2014.04.011 – volume: 44 start-page: e135 year: 2016 ident: ref_154 article-title: Illumina-based RiboMethSeq approach for mapping of 2′-O-Me residues in RNA publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw547 – volume: 5 start-page: 402 year: 2014 ident: ref_104 article-title: Nucleolar stress with and without p53 publication-title: Nucleus doi: 10.4161/nucl.32235 – ident: ref_159 doi: 10.1371/journal.pone.0011779 – volume: 20 start-page: 1122 year: 2013 ident: ref_67 article-title: The RNA-binding protein repertoire of embryonic stem cells publication-title: Nat. Struct. Mol. Biol. doi: 10.1038/nsmb.2638 – volume: 17 start-page: 559 year: 2011 ident: ref_98 article-title: Ablation of Fmrp in adult neural stem cells disrupts hippocampus-dependent learning publication-title: Nat. Med. doi: 10.1038/nm.2336 – volume: 8 start-page: 137 year: 2012 ident: ref_20 article-title: Proteomics profiling of human embryonic stem cells in the early differentiation stage publication-title: Stem Cell Rev. Rep. doi: 10.1007/s12015-011-9286-y – volume: 45 start-page: 1433 year: 2017 ident: ref_153 article-title: High-throughput single-base resolution mapping of RNA 2-O-methylated residues publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw810 – volume: 11 start-page: 33 year: 2014 ident: ref_149 article-title: RPL39L is an example of a recently evolved ribosomal protein paralog that shows highly specific tissue expression patterns and is upregulated in ESCs and HCC tumors publication-title: RNA Biol. doi: 10.4161/rna.27427 – volume: 11 start-page: 503 year: 2012 ident: ref_111 article-title: Ribosomal stress induces L11- and p53-dependent apoptosis in mouse pluripotent stem cells publication-title: Cell Cycle doi: 10.4161/cc.11.3.19002 – volume: 12 start-page: 263 year: 2010 ident: ref_11 article-title: mTOR-mediated activation of p70 S6K induces differentiation of pluripotent human embryonic stem cells publication-title: Cell Reprogram doi: 10.1089/cell.2010.0011 – ident: ref_12 doi: 10.1371/journal.pone.0139076 – volume: 279 start-page: 169 year: 2004 ident: ref_46 article-title: mTOR signaling to translation publication-title: Curr. Top. Microbiol. Immunol. – volume: 17 start-page: 236 year: 2016 ident: ref_141 article-title: Patterns of ribosomal protein expression specify normal and malignant human cells publication-title: Genome Biol. doi: 10.1186/s13059-016-1104-z – volume: 44 start-page: 1411 year: 2016 ident: ref_53 article-title: Ribonucleoprotein bodies are phased in publication-title: Biochem. Soc. Trans. doi: 10.1042/BST20160117 – volume: 33 start-page: 8125 year: 2019 ident: ref_90 article-title: Small ribonucleoprotein particle protein SmD3 governs the homeostasis of germline stem cells and the crosstalk between the spliceosome and ribosome signals in Drosophila publication-title: FASEB J. doi: 10.1096/fj.201802536RR – volume: 127 start-page: 398 year: 2001 ident: ref_142 article-title: The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome publication-title: Plant Physiol. doi: 10.1104/pp.010265 – volume: 25 start-page: 780 year: 2009 ident: ref_63 article-title: [Asymetric growth in Drosophila stem cells is related to ribosomal biogenesis] publication-title: Med. Sci. – volume: 17 start-page: 150 year: 2020 ident: ref_158 article-title: Developmental changes of rRNA ribose methylations in the mouse publication-title: RNA Biol. doi: 10.1080/15476286.2019.1670598 – volume: 10 start-page: 908 year: 2011 ident: ref_14 article-title: Rapamycin and other longevity-promoting compounds enhance the generation of mouse induced pluripotent stem cells publication-title: Aging Cell doi: 10.1111/j.1474-9726.2011.00722.x – volume: 2 start-page: e983755 year: 2015 ident: ref_157 article-title: Ribosome heterogeneity in tumorigenesis: The rRNA point of view publication-title: Mol. Cell Oncol. doi: 10.4161/23723556.2014.983755 – volume: 197 start-page: 731 year: 2012 ident: ref_86 article-title: Nucleostemin maintains self-renewal of embryonic stem cells and promotes reprogramming of somatic cells to pluripotency publication-title: J. Cell Biol. doi: 10.1083/jcb.201103071 – volume: 540 start-page: 119 year: 2016 ident: ref_48 article-title: Inhibition of mTOR induces a paused pluripotent state publication-title: Nature doi: 10.1038/nature20578 – volume: 284 start-page: 26685 year: 2009 ident: ref_82 article-title: Novel role of nucleostemin in the maintenance of nucleolar architecture and integrity of small nucleolar ribonucleoproteins and the telomerase complex publication-title: J. Biol. Chem. doi: 10.1074/jbc.M109.013342 – volume: 588 start-page: 1491 year: 2014 ident: ref_106 article-title: Diverse diseases from a ubiquitous process: The ribosomopathy paradox publication-title: FEBS Lett. doi: 10.1016/j.febslet.2014.03.024 – volume: 51 start-page: 1518 year: 2019 ident: ref_95 article-title: Germline NPM1 mutations lead to altered rRNA 2′-O-methylation and cause dyskeratosis congenita publication-title: Nat. Genet. doi: 10.1038/s41588-019-0502-z – ident: ref_120 – volume: 1849 start-page: 801 year: 2015 ident: ref_121 article-title: The race to decipher the top secrets of TOP mRNAs publication-title: Biochim. Biophys. Acta doi: 10.1016/j.bbagrm.2014.08.015 – volume: 534 start-page: 335 year: 2016 ident: ref_21 article-title: Stem cell function and stress response are controlled by protein synthesis publication-title: Nature doi: 10.1038/nature18282 – volume: 99 start-page: 5400 year: 2002 ident: ref_42 article-title: The caspase-cleaved DAP5 protein supports internal ribosome entry site-mediated translation of death proteins publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.082102499 – volume: 10 start-page: e1524 year: 2019 ident: ref_52 article-title: Stress-induced mRNP granules: Form and function of processing bodies and stress granules publication-title: Wiley Interdiscip. Rev. RNA doi: 10.1002/wrna.1524 – volume: 7 start-page: 34 year: 2018 ident: ref_56 article-title: The ribosome, (slow) beating heart of cancer (stem) cell publication-title: Oncogenesis doi: 10.1038/s41389-018-0044-8 – volume: 36 start-page: 168 year: 2008 ident: ref_43 article-title: The eIF4G homolog DAP5/p97 supports the translation of select mRNAs during endoplasmic reticulum stress publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkm1007 – volume: 9 start-page: 3226 year: 2019 ident: ref_136 article-title: Pelota-interacting G protein Hbs1 is required for spermatogenesis in Drosophila publication-title: Sci. Rep. doi: 10.1038/s41598-019-39530-6 – volume: 11 start-page: e1001455 year: 2013 ident: ref_127 article-title: The circadian clock coordinates ribosome biogenesis publication-title: PLoS Biol. doi: 10.1371/journal.pbio.1001455 – volume: 173 start-page: 1204 year: 2018 ident: ref_13 article-title: Pseudouridylation of tRNA-Derived Fragments Steers Translational Control in Stem Cells publication-title: Cell doi: 10.1016/j.cell.2018.03.008 – volume: 10 start-page: R2 year: 2009 ident: ref_144 article-title: Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes publication-title: Genome Biol. doi: 10.1186/gb-2009-10-1-r2 – volume: 112 start-page: 2127 year: 2015 ident: ref_113 article-title: Haploinsufficiency screen highlights two distinct groups of ribosomal protein genes essential for embryonic stem cell fate publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1418845112 – volume: 473 start-page: 337 year: 2011 ident: ref_3 article-title: Global quantification of mammalian gene expression control publication-title: Nature doi: 10.1038/nature10098 – volume: 150 start-page: 97 year: 1984 ident: ref_18 article-title: Influence of retinoic acid on protein synthesis and transport of L-methionine in cultured L cells publication-title: Exp. Cell Res. doi: 10.1016/0014-4827(84)90705-5 – volume: 9 start-page: 2886 year: 2018 ident: ref_73 article-title: The ubiquitin ligase UBR5 suppresses proteostasis collapse in pluripotent stem cells from Huntington’s disease patients publication-title: Nat. Commun. doi: 10.1038/s41467-018-05320-3 – volume: 117 start-page: 2567 year: 2011 ident: ref_112 article-title: Haploinsufficiency for ribosomal protein genes causes selective activation of p53 in human erythroid progenitor cells publication-title: Blood doi: 10.1182/blood-2010-07-295238 – ident: ref_83 doi: 10.7554/eLife.03077 – volume: 7 start-page: 550 year: 2011 ident: ref_4 article-title: The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells publication-title: Mol. Syst. Biol. doi: 10.1038/msb.2011.84 – volume: 343 start-page: 298 year: 2014 ident: ref_60 article-title: Changes in rRNA transcription influence proliferation and cell fate within a stem cell lineage publication-title: Science doi: 10.1126/science.1246384 – volume: 20 start-page: 748 year: 2014 ident: ref_125 article-title: Altered translation of GATA1 in Diamond-Blackfan anemia publication-title: Nat. Med. doi: 10.1038/nm.3557 – volume: 89 start-page: 1235 year: 2003 ident: ref_84 article-title: Characterization of mesenchymal stem cells isolated from murine bone marrow by negative selection publication-title: J. Cell. Biochem. doi: 10.1002/jcb.10594 – volume: 14 start-page: 606 year: 2014 ident: ref_49 article-title: Multifaceted regulation of somatic cell reprogramming by mRNA translational control publication-title: Cell Stem Cell doi: 10.1016/j.stem.2014.02.005 – volume: 26 start-page: 3643 year: 2019 ident: ref_65 article-title: Maintenance of Nucleolar Homeostasis by CBX4 Alleviates Senescence and Osteoarthritis publication-title: Cell Rep. doi: 10.1016/j.celrep.2019.02.088 – volume: 145 start-page: 383 year: 2011 ident: ref_150 article-title: Ribosome-mediated specificity in Hox mRNA translation and vertebrate tissue patterning publication-title: Cell doi: 10.1016/j.cell.2011.03.028 – volume: 30 start-page: 1991 year: 2016 ident: ref_41 article-title: Cap-independent translation by DAP5 controls cell fate decisions in human embryonic stem cells publication-title: Genes Dev. doi: 10.1101/gad.285239.116 – volume: 22 start-page: 8101 year: 2002 ident: ref_122 article-title: Transduction of growth or mitogenic signals into translational activation of TOP mRNAs is fully reliant on the phosphatidylinositol 3-kinase-mediated pathway but requires neither S6K1 nor rpS6 phosphorylation publication-title: Mol. Cell Biol. doi: 10.1128/MCB.22.23.8101-8113.2002 – ident: ref_109 doi: 10.3390/cells8030229 – volume: 4 start-page: e1086520 year: 2015 ident: ref_50 article-title: LIF signal in mouse embryonic stem cells publication-title: JAKSTAT – volume: 2 start-page: 448 year: 2008 ident: ref_10 article-title: A hierarchical network controls protein translation during murine embryonic stem cell self-renewal and differentiation publication-title: Cell Stem Cell doi: 10.1016/j.stem.2008.03.013 – volume: 22 start-page: 1696 year: 2019 ident: ref_70 article-title: Single-cell transcriptomic profiling of the aging mouse brain publication-title: Nat. Neurosci. doi: 10.1038/s41593-019-0491-3 – volume: 5 start-page: 1512 year: 2009 ident: ref_1 article-title: Global signatures of protein and mRNA expression levels publication-title: Mol. Biosyst. – volume: 19 start-page: 900 year: 2012 ident: ref_32 article-title: RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis publication-title: Nat. Struct. Mol. Biol. doi: 10.1038/nsmb.2357 – volume: 497 start-page: 776 year: 2018 ident: ref_92 article-title: Ribosome biogenesis protein Urb2 regulates hematopoietic stem cells development via P53 pathway in zebrafish publication-title: Biochem. Biophys. Res. Commun. doi: 10.1016/j.bbrc.2018.02.153 – volume: 24 start-page: 411 year: 2013 ident: ref_151 article-title: Control of hematopoietic stem cell emergence by antagonistic functions of ribosomal protein paralogs publication-title: Dev. Cell doi: 10.1016/j.devcel.2013.01.018 – volume: 14 start-page: e1007226 year: 2018 ident: ref_91 article-title: RNA helicase, DDX27 regulates skeletal muscle growth and regeneration by modulation of translational processes publication-title: PLoS Genet. doi: 10.1371/journal.pgen.1007226 – volume: 131 start-page: 557 year: 2007 ident: ref_143 article-title: Functional specificity among ribosomal proteins regulates gene expression publication-title: Cell doi: 10.1016/j.cell.2007.08.037 – ident: ref_147 doi: 10.1186/1471-2199-11-33 – volume: 26 start-page: 3237 year: 2008 ident: ref_85 article-title: Identification of stem cells during prepubertal spermatogenesis via monitoring of nucleostemin promoter activity publication-title: Stem Cells doi: 10.1634/stemcells.2008-0506 – volume: 352 start-page: 1413 year: 2016 ident: ref_34 article-title: Translational control by 5′-untranslated regions of eukaryotic mRNAs publication-title: Science doi: 10.1126/science.aad9868 – volume: 3 start-page: e1025185 year: 2015 ident: ref_124 article-title: Ribosomopathies: Global process, tissue specific defects publication-title: Rare Dis. doi: 10.1080/21675511.2015.1025185 – volume: 106 start-page: 7507 year: 2009 ident: ref_37 article-title: Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.0810916106 – volume: 9 start-page: 692 year: 2019 ident: ref_68 article-title: Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia publication-title: Front. Oncol. doi: 10.3389/fonc.2019.00692 – volume: 8 start-page: 2045 year: 2017 ident: ref_69 article-title: Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis publication-title: Nat. Commun. doi: 10.1038/s41467-017-02305-6 – volume: 132 start-page: 5365 year: 2005 ident: ref_138 article-title: Pelota controls self-renewal of germline stem cells by repressing a Bam-independent differentiation pathway publication-title: Development doi: 10.1242/dev.02151 – volume: 13 start-page: 745 year: 2013 ident: ref_132 article-title: Human epidermal stem cell function is regulated by circadian oscillations publication-title: Cell Stem Cell doi: 10.1016/j.stem.2013.09.004 – volume: 147 start-page: 789 year: 2011 ident: ref_7 article-title: Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes publication-title: Cell doi: 10.1016/j.cell.2011.10.002 – ident: ref_76 doi: 10.7554/eLife.03573 – volume: 23 start-page: 2862 year: 2014 ident: ref_94 article-title: Lrrc34, a novel nucleolar protein, interacts with npm1 and ncl and has an impact on pluripotent stem cells publication-title: Stem Cells Dev. doi: 10.1089/scd.2013.0470 – volume: 12 start-page: 368 year: 2019 ident: ref_102 article-title: FMRP Interacts with C/D Box snoRNA in the Nucleus and Regulates Ribosomal RNA Methylation publication-title: iScience doi: 10.1016/j.isci.2019.01.026 – ident: ref_93 doi: 10.1002/1873-3468.13559 – volume: 30 start-page: 1698 year: 2016 ident: ref_26 article-title: The rate of protein synthesis in hematopoietic stem cells is limited partly by 4E-BPs publication-title: Genes Dev doi: 10.1101/gad.282756.116 – volume: 29 start-page: 214 year: 2009 ident: ref_114 article-title: Fragile X mental retardation protein FMRP binds mRNAs in the nucleus publication-title: Mol. Cell Biol. doi: 10.1128/MCB.01377-08 – volume: 21 start-page: 2630 year: 2012 ident: ref_15 article-title: An elaborate regulation of Mammalian target of rapamycin activity is required for somatic cell reprogramming induced by defined transcription factors publication-title: Stem Cells Dev. doi: 10.1089/scd.2012.0015 – volume: 18 start-page: 276 year: 2016 ident: ref_24 article-title: Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation publication-title: Cell Stem Cell doi: 10.1016/j.stem.2015.11.004 – volume: 18 start-page: 51 year: 2018 ident: ref_59 article-title: Ribosome biogenesis in cancer: New players and therapeutic avenues publication-title: Nat. Rev. Cancer doi: 10.1038/nrc.2017.104 – volume: 147 start-page: 1431 year: 1999 ident: ref_54 article-title: RNA-binding proteins TIA-1 and TIAR link the phosphorylation of eIF-2 alpha to the assembly of mammalian stress granules publication-title: J. Cell. Biol. doi: 10.1083/jcb.147.7.1431 – volume: 509 start-page: 49 year: 2014 ident: ref_25 article-title: Haematopoietic stem cells require a highly regulated protein synthesis rate publication-title: Nature doi: 10.1038/nature13035 – volume: 13 start-page: 56 year: 2003 ident: ref_36 article-title: Eukaryotic translation initiation factors and regulators publication-title: Curr. Opin. Struct. Biol. doi: 10.1016/S0959-440X(03)00009-5 – volume: 18 start-page: 79 year: 2016 ident: ref_28 article-title: Phosphorylation of eIF2alpha Is a Translational Control Mechanism Regulating Muscle Stem Cell Quiescence and Self-Renewal publication-title: Cell Stem Cell doi: 10.1016/j.stem.2015.09.020 – volume: 19 start-page: 791 year: 2018 ident: ref_110 article-title: Translation deregulation in human disease publication-title: Nat. Rev. Mol. Cell Biol. doi: 10.1038/s41580-018-0034-x – volume: 24 start-page: 700 year: 2017 ident: ref_160 article-title: Rps26 directs mRNA-specific translation by recognition of Kozak sequence elements publication-title: Nat. Struct. Mol. Biol. doi: 10.1038/nsmb.3442 – volume: 36 start-page: 1073 year: 2004 ident: ref_39 article-title: Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise publication-title: Nat. Genet. doi: 10.1038/ng1429 – volume: 156 start-page: 950 year: 2014 ident: ref_134 article-title: Dom34 rescues ribosomes in 3′ untranslated regions publication-title: Cell doi: 10.1016/j.cell.2014.02.006 – volume: 27 start-page: 1498 year: 2017 ident: ref_146 article-title: RPL10L Is Required for Male Meiotic Division by Compensating for RPL10 during Meiotic Sex Chromosome Inactivation in Mice publication-title: Curr. Biol. doi: 10.1016/j.cub.2017.04.017 – volume: 127 start-page: 3885 year: 2014 ident: ref_89 article-title: Turning a new page on nucleostemin and self-renewal publication-title: J. Cell Sci. – volume: 17 start-page: 1152 year: 2001 ident: ref_140 article-title: Differential expression of genes coding for ribosomal proteins in different human tissues publication-title: Bioinformatics doi: 10.1093/bioinformatics/17.12.1152 – volume: 11 start-page: 113 year: 2010 ident: ref_35 article-title: The mechanism of eukaryotic translation initiation and principles of its regulation publication-title: Nat. Rev. Mol. Cell Biol. doi: 10.1038/nrm2838 – volume: 64 start-page: 393 year: 2018 ident: ref_57 article-title: Feedback regulation of ribosome assembly publication-title: Curr. Genet. doi: 10.1007/s00294-017-0764-x – volume: 54 start-page: 407 year: 2014 ident: ref_101 article-title: Fragile X mental retardation protein regulates translation by binding directly to the ribosome publication-title: Mol. Cell. doi: 10.1016/j.molcel.2014.03.023 – volume: 115 start-page: E11397 year: 2018 ident: ref_100 article-title: Regulatory discrimination of mRNAs by FMRP controls mouse adult neural stem cell differentiation publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1809588115 – volume: 167 start-page: 27 year: 2004 ident: ref_38 article-title: Translation reinitiation at alternative open reading frames regulates gene expression in an integrated stress response publication-title: J. Cell Biol. doi: 10.1083/jcb.200408003 – ident: ref_31 doi: 10.1371/journal.pgen.1002403 – volume: 284 start-page: 4968 year: 2009 ident: ref_81 article-title: Critical role of nucleostemin in pre-rRNA processing publication-title: J. Biol. Chem. doi: 10.1074/jbc.M804594200 – volume: 149 start-page: 213 year: 2015 ident: ref_137 article-title: Pelota mediates gonocyte maturation and maintenance of spermatogonial stem cells in mouse testes publication-title: Reproduction doi: 10.1530/REP-14-0391 – volume: 9 start-page: 301 year: 2018 ident: ref_72 article-title: Key genes and integrated modules in hematopoietic differentiation of human embryonic stem cells: A comprehensive bioinformatic analysis publication-title: Stem Cell Res. Ther. doi: 10.1186/s13287-018-1050-7 – volume: 2 start-page: 125 year: 2018 ident: ref_105 article-title: Nucleolar Stress: Hallmarks, sensing mechanism and diseases publication-title: Cell Stress doi: 10.15698/cst2018.06.139 – ident: ref_108 doi: 10.1126/science.aan2755 – volume: 441 start-page: 196 year: 2013 ident: ref_88 article-title: Nucleostemin is indispensable for the maintenance and genetic stability of hematopoietic stem cells publication-title: Biochem. Biophys. Res. Commun. doi: 10.1016/j.bbrc.2013.10.032 – volume: 521 start-page: 91 year: 2013 ident: ref_148 article-title: Identification and expression of an autosomal paralogue of ribosomal protein S4, X-linked, in mice: Potential involvement of testis-specific ribosomal proteins in translation and spermatogenesis publication-title: Gene doi: 10.1016/j.gene.2013.02.040 – ident: ref_123 doi: 10.1093/nar/gkz637 – volume: 305 ( Pt 2) start-page: 391 year: 1995 ident: ref_17 article-title: Effect of retinoic acid on protein synthesis by foetal bovine chondrocytes in high-density culture: Down-regulation of the glucose-regulated protein, GRP-78, and type II collagen publication-title: Biochem. J. doi: 10.1042/bj3050391 – volume: 149 start-page: 274 year: 2012 ident: ref_47 article-title: mTOR signaling in growth control and disease publication-title: Cell doi: 10.1016/j.cell.2012.03.017 – volume: 431 start-page: 111 year: 2017 ident: ref_133 article-title: Stem cells and the circadian clock publication-title: Dev. Biol. doi: 10.1016/j.ydbio.2017.09.012 – volume: 23 start-page: 1853 year: 2018 ident: ref_64 article-title: NoRC Recruitment by H2A.X Deposition at rRNA Gene Promoter Limits Embryonic Stem Cell Proliferation publication-title: Cell Rep. doi: 10.1016/j.celrep.2018.04.023 – volume: 29 start-page: 2004 year: 2015 ident: ref_16 article-title: Role of the small subunit processome in the maintenance of pluripotent stem cells publication-title: Genes Dev. doi: 10.1101/gad.267112.115 – volume: 583 start-page: 3966 year: 2009 ident: ref_2 article-title: Correlation of mRNA and protein in complex biological samples publication-title: FEBS Lett. doi: 10.1016/j.febslet.2009.10.036 – ident: ref_80 doi: 10.1242/dev.162636 – volume: 46 start-page: 518 year: 2012 ident: ref_135 article-title: Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3′ end of aberrant mRNA publication-title: Mol Cell doi: 10.1016/j.molcel.2012.03.013 – ident: ref_55 doi: 10.1016/j.stem.2019.08.018 – volume: 19 start-page: 18 year: 2018 ident: ref_131 article-title: Circadian clocks: From stem cells to tissue homeostasis and regeneration publication-title: EMBO Rep. doi: 10.15252/embr.201745130 – volume: 5 start-page: 433 year: 2013 ident: ref_22 article-title: mTORC1 targets the translational repressor 4E-BP2, but not S6 kinase 1/2, to regulate neural stem cell self-renewal in vivo publication-title: Cell Rep. doi: 10.1016/j.celrep.2013.09.017 – volume: 67 start-page: 71 year: 2017 ident: ref_162 article-title: Heterogeneous Ribosomes Preferentially Translate Distinct Subpools of mRNAs Genome-wide publication-title: Mol. Cell doi: 10.1016/j.molcel.2017.05.021 – volume: 24 start-page: 1803 year: 2018 ident: ref_62 article-title: Mouse adult hematopoietic stem cells actively synthesize ribosomal RNA publication-title: RNA doi: 10.1261/rna.067843.118 – volume: 27 start-page: 2582 year: 2015 ident: ref_126 article-title: The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading publication-title: Plant. Cell doi: 10.1105/tpc.15.00546 – volume: 25 start-page: 7120 year: 2005 ident: ref_116 article-title: A family of mammalian E3 ubiquitin ligases that contain the UBR box motif and recognize N-degrons publication-title: Mol. Cell Biol. doi: 10.1128/MCB.25.16.7120-7136.2005 – volume: 25 start-page: 7534 year: 2005 ident: ref_115 article-title: Human histone chaperone nucleophosmin enhances acetylation-dependent chromatin transcription publication-title: Mol. Cell Biol. doi: 10.1128/MCB.25.17.7534-7545.2005 – volume: 38 start-page: 1027 year: 2010 ident: ref_51 article-title: The ground state of pluripotency publication-title: Biochem. Soc. Trans. doi: 10.1042/BST0381027 – volume: 462 start-page: 358 year: 2009 ident: ref_6 article-title: Systems-level dynamic analyses of fate change in murine embryonic stem cells publication-title: Nature doi: 10.1038/nature08575 – volume: 20 start-page: 116 year: 2019 ident: ref_58 article-title: Ribosome assembly coming into focus publication-title: Nat. Rev. Mol. Cell Biol. doi: 10.1038/s41580-018-0078-y – volume: 114 start-page: 12934 year: 2017 ident: ref_156 article-title: Evidence for rRNA 2′-O-methylation plasticity: Control of intrinsic translational capabilities of human ribosomes publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1707674114 – volume: 210 start-page: 2351 year: 2013 ident: ref_78 article-title: Notchless-dependent ribosome synthesis is required for the maintenance of adult hematopoietic stem cells publication-title: J. Exp. Med. doi: 10.1084/jem.20122019 – volume: 25 start-page: 102 year: 2017 ident: ref_129 article-title: Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver publication-title: Cell Metab. doi: 10.1016/j.cmet.2016.10.003 – volume: 140 start-page: 4860 year: 2013 ident: ref_71 article-title: Zebrafish midbrain slow-amplifying progenitors exhibit high levels of transcripts for nucleotide and ribosome biogenesis publication-title: Development doi: 10.1242/dev.099010 – ident: ref_128 doi: 10.7554/eLife.46919 – volume: 13 start-page: 865 year: 2015 ident: ref_161 article-title: Differential Stoichiometry among Core Ribosomal Proteins publication-title: Cell Rep. doi: 10.1016/j.celrep.2015.09.056 – volume: 8 start-page: 1013 year: 2015 ident: ref_107 article-title: Ribosomopathies: How a common root can cause a tree of pathologies publication-title: Dis Model Mech. doi: 10.1242/dmm.020529 – volume: 14 start-page: 1138 year: 2017 ident: ref_155 article-title: Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function publication-title: RNA Biol. doi: 10.1080/15476286.2016.1259781 – volume: 30 start-page: 447 year: 2008 ident: ref_45 article-title: DAP5 promotes cap-independent translation of Bcl-2 and CDK1 to facilitate cell survival during mitosis publication-title: Mol. Cell. doi: 10.1016/j.molcel.2008.03.018 – volume: 9 start-page: 689 year: 2013 ident: ref_5 article-title: Protein synthesis rate is the predominant regulator of protein expression during differentiation publication-title: Mol. Syst. Biol. doi: 10.1038/msb.2013.47 – volume: 6 start-page: e1000898 year: 2010 ident: ref_97 article-title: Fragile x mental retardation protein regulates proliferation and differentiation of adult neural stem/progenitor cells publication-title: PLoS Genet. doi: 10.1371/journal.pgen.1000898 – volume: 32 start-page: 3099 year: 2014 ident: ref_74 article-title: Biosynthesis of ribosomal RNA in nucleoli regulates pluripotency and differentiation ability of pluripotent stem cells publication-title: Stem Cells doi: 10.1002/stem.1825 – volume: 33 start-page: 2020 year: 2014 ident: ref_30 article-title: Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders publication-title: EMBO J. doi: 10.15252/embj.201489282 – volume: 374 start-page: 32 year: 2013 ident: ref_99 article-title: Neural differentiation of Fragile X human Embryonic Stem Cells reveals abnormal patterns of development despite successful neurogenesis publication-title: Dev. Biol. doi: 10.1016/j.ydbio.2012.11.031 – volume: 9 start-page: 1351 year: 2010 ident: ref_145 article-title: Proteomic analysis of rodent ribosomes revealed heterogeneity including ribosomal proteins L10-like, L22-like 1, and L39-like publication-title: J. Proteome Res. doi: 10.1021/pr9008964 – volume: 16 start-page: 2991 year: 2002 ident: ref_87 article-title: A nucleolar mechanism controlling cell proliferation in stem cells and cancer cells publication-title: Genes Dev. doi: 10.1101/gad.55671 – volume: 84 start-page: 723 year: 2014 ident: ref_27 article-title: An eIF4E1/4E-T complex determines the genesis of neurons from precursors by translationally repressing a proneurogenic transcription program publication-title: Neuron doi: 10.1016/j.neuron.2014.10.022 – volume: 25 start-page: 1848 year: 2015 ident: ref_130 article-title: Ribosome profiling reveals the rhythmic liver translatome and circadian clock regulation by upstream open reading frames publication-title: Genome Res. doi: 10.1101/gr.195404.115 – volume: 20 start-page: 8635 year: 2000 ident: ref_40 article-title: Upstream open reading frames as regulators of mRNA translation publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.20.23.8635-8642.2000 – volume: 27 start-page: 1244 year: 2009 ident: ref_77 article-title: Ly-1 antibody reactive clone is an important nucleolar protein for control of self-renewal and differentiation in embryonic stem cells publication-title: Stem Cells doi: 10.1002/stem.55 – volume: 22 start-page: 369 year: 2018 ident: ref_29 article-title: The Transcriptionally Permissive Chromatin State of Embryonic Stem Cells Is Acutely Tuned to Translational Output publication-title: Cell Stem Cell doi: 10.1016/j.stem.2018.02.004 – volume: 17 start-page: 165 year: 2015 ident: ref_66 article-title: Runx1 Deficiency Decreases Ribosome Biogenesis and Confers Stress Resistance to Hematopoietic Stem and Progenitor Cells publication-title: Cell Stem Cell doi: 10.1016/j.stem.2015.06.002 – ident: ref_61 doi: 10.1371/journal.pone.0157276 – volume: 286 start-page: 43370 year: 2011 ident: ref_75 article-title: Nucleolin maintains embryonic stem cell self-renewal by suppression of p53 protein-dependent pathway publication-title: J. Biol. Chem doi: 10.1074/jbc.M111.225185 – volume: 18 start-page: 545 year: 2017 ident: ref_152 article-title: Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing publication-title: Cell Rep. doi: 10.1016/j.celrep.2016.12.034 – volume: 22 start-page: 543 year: 2018 ident: ref_117 article-title: Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation publication-title: Cell Stem Cell doi: 10.1016/j.stem.2018.03.002 – volume: 2 start-page: 815 year: 2010 ident: ref_96 article-title: Core transcription factors, Oct4, Sox2 and Nanog, individually form complexes with nucleophosmin (Npm1) to control embryonic stem (ES) cell fate determination publication-title: Aging (Albany NY) doi: 10.18632/aging.100222 – ident: ref_103 doi: 10.3390/biom8040123 – volume: 165 start-page: 535 year: 2016 ident: ref_8 article-title: On the Dependency of Cellular Protein Levels on mRNA Abundance publication-title: Cell doi: 10.1016/j.cell.2016.03.014 – volume: 113 start-page: 47 year: 1982 ident: ref_19 article-title: Effects of retinoic acid on protein synthesis in cultured melanoma cells publication-title: J. Cell Physiol. doi: 10.1002/jcp.1041130110 – volume: 43 start-page: 3764 year: 2015 ident: ref_44 article-title: DAP5 associates with eIF2beta and eIF4AI to promote Internal Ribosome Entry Site driven translation publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv205 – volume: 12 start-page: 379 year: 2002 ident: ref_119 article-title: The human ribosomal protein genes: Sequencing and comparative analysis of 73 genes publication-title: Genome Res. doi: 10.1101/gr.214202 |
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SubjectTerms | Adult Stem Cells - metabolism Animals Cell Differentiation Embryonic Stem Cells - metabolism Homeostasis Humans Life Sciences Mice Protein Biosynthesis Review ribosomal proteins Ribosomal Proteins - metabolism ribosome biogenesis ribosomes Ribosomes - metabolism RNA Processing, Post-Transcriptional RNA, Messenger - metabolism RNA, Ribosomal - metabolism rrna modifications specialized ribosomes stem cells translational regulation |
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Title | Ribosome and Translational Control in Stem Cells |
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