igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV)
Abstract Summary igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-p...
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| Published in | Bioinformatics (Oxford, England) Vol. 39; no. 1 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
Oxford University Press
01.01.2023
Oxford Publishing Limited (England) |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1367-4811 1367-4803 1367-4811 |
| DOI | 10.1093/bioinformatics/btac830 |
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| Abstract | Abstract
Summary
igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required.
Availability and implementation
The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license.
Supplementary information
Supplementary information is available at Bioinformatics online. |
|---|---|
| AbstractList | igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required. Availability and implementation The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license. Supplementary information Supplementary information is available at Bioinformatics online. igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required. The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license. Supplementary information is available at Bioinformatics online. igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required.SUMMARYigv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required.The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license.AVAILABILITY AND IMPLEMENTATIONThe igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license.Supplementary information is available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary information is available at Bioinformatics online. Abstract Summary igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of code and has no external dependencies. The viewer runs completely in the web browser, with no backend server and no data pre-processing required. Availability and implementation The igv.js JavaScript component can be installed from NPM at https://www.npmjs.com/package/igv. The source code is available at https://github.com/igvteam/igv.js under the MIT open-source license. IGV-Web, the end-user application built around igv.js, is available at https://igv.org/app. The source code is available at https://github.com/igvteam/igv-webapp under the MIT open-source license. Supplementary information Supplementary information is available at Bioinformatics online. |
| Author | Robinson, James T Turner, Douglass Mesirov, Jill P Thorvaldsdottir, Helga |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/36562559$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1158/0008-5472.CAN-17-0337 10.1093/bioinformatics/btr020 10.1093/nar/30.1.38 10.1101/gr.229102 10.1038/nbt.1754 10.1093/bib/bbs017 10.1186/s13059-016-0924-1 |
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| References | Down (2023010802582047400_btac830-B2) 2011; 27 Robinson (2023010802582047400_btac830-B6) 2011; 29 Robinson (2023010802582047400_btac830-B5) 2017; 77 Hubbard (2023010802582047400_btac830-B3) 2002; 30 Kent (2023010802582047400_btac830-B4) 2002; 12 Buels (2023010802582047400_btac830-B1) 2016; 17 Thorvaldsdottir (2023010802582047400_btac830-B7) 2013; 14 |
| References_xml | – volume: 77 start-page: e31 year: 2017 ident: 2023010802582047400_btac830-B5 article-title: Variant review with the integrative genomics viewer publication-title: Cancer Res doi: 10.1158/0008-5472.CAN-17-0337 – volume: 27 start-page: 889 year: 2011 ident: 2023010802582047400_btac830-B2 article-title: Dalliance: interactive genome viewing on the web publication-title: Bioinformatics doi: 10.1093/bioinformatics/btr020 – volume: 30 start-page: 38 year: 2002 ident: 2023010802582047400_btac830-B3 article-title: The Ensembl genome database project publication-title: Nucleic Acids Res doi: 10.1093/nar/30.1.38 – volume: 12 start-page: 996 year: 2002 ident: 2023010802582047400_btac830-B4 article-title: The human genome browser at UCSC publication-title: Genome Res doi: 10.1101/gr.229102 – volume: 29 start-page: 24 year: 2011 ident: 2023010802582047400_btac830-B6 article-title: Integrative genomics viewer publication-title: Nat. Biotechnol doi: 10.1038/nbt.1754 – volume: 14 start-page: 178 year: 2013 ident: 2023010802582047400_btac830-B7 article-title: Integrative genomics viewer (IGV): high-performance genomics data visualization and exploration publication-title: Brief. Bioinform doi: 10.1093/bib/bbs017 – volume: 17 start-page: 66 year: 2016 ident: 2023010802582047400_btac830-B1 article-title: JBrowse: a dynamic web platform for genome visualization and analysis publication-title: Genome Biol doi: 10.1186/s13059-016-0924-1 |
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Summary
igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a... igv.js is an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). It can be easily dropped into any web page with a single line of... |
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| Title | igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV) |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/36562559 https://www.proquest.com/docview/3133523257 https://www.proquest.com/docview/2758113474 https://pubmed.ncbi.nlm.nih.gov/PMC9825295 |
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