Centennial Review: Factors affecting the chicken gastrointestinal microbial composition and their association with gut health and productive performance

Maintenance of “gut health” is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to evaluate it is still lacking. In research settings, monitoring of gut microbiota has gained great attention as shifts in microbial community compo...

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Published inPoultry science Vol. 101; no. 1; p. 101612
Main Authors Bindari, Yugal Raj, Gerber, Priscilla F.
Format Journal Article
LanguageEnglish
Published England Elsevier Inc 01.01.2022
Elsevier
Subjects
16S rRNA sequencing
Animals
biomarkers
Chickens
coccidiosis
community structure
Data Collection
flock monitoring
Gastrointestinal Microbiome
gastrointestinal system
gut health
intestinal microorganisms
microbial communities
Microbiology and Food Safety
necrotic enteritis
noninvasive sampling
gut health
biomarkers
16S rRNA sequencing
flock monitoring
noninvasive sampling
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Abstract Maintenance of “gut health” is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to evaluate it is still lacking. In research settings, monitoring of gut microbiota has gained great attention as shifts in microbial community composition have been associated with gut health and productive performance. However, microbial signatures associated with productivity remain elusive because of the high variability of the microbiota of individual birds resulting in multiple and sometimes contradictory profiles associated with poor or high performance. The high costs associated with the testing and the need for the terminal sampling of a large number of birds for the collection of gut contents also make this tool of limited use in commercial settings. This review highlights the existing literature on the chicken digestive system and associated microbiota; factors affecting the gut microbiota and emergence of the major chicken enteric diseases coccidiosis and necrotic enteritis; methods to evaluate gut health and their association with performance; main issues in investigating chicken microbial populations; and the relationship of microbial profiles and production outcomes. Emphasis is given to emerging noninvasive and easy-to-collect sampling methods that could be used to monitor gut health and microbiological changes in commercial flocks.
AbstractList Maintenance of “gut health” is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to evaluate it is still lacking. In research settings, monitoring of gut microbiota has gained great attention as shifts in microbial community composition have been associated with gut health and productive performance. However, microbial signatures associated with productivity remain elusive because of the high variability of the microbiota of individual birds resulting in multiple and sometimes contradictory profiles associated with poor or high performance. The high costs associated with the testing and the need for the terminal sampling of a large number of birds for the collection of gut contents also make this tool of limited use in commercial settings. This review highlights the existing literature on the chicken digestive system and associated microbiota; factors affecting the gut microbiota and emergence of the major chicken enteric diseases coccidiosis and necrotic enteritis; methods to evaluate gut health and their association with performance; main issues in investigating chicken microbial populations; and the relationship of microbial profiles and production outcomes. Emphasis is given to emerging noninvasive and easy-to-collect sampling methods that could be used to monitor gut health and microbiological changes in commercial flocks.
Maintenance of "gut health" is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to evaluate it is still lacking. In research settings, monitoring of gut microbiota has gained great attention as shifts in microbial community composition have been associated with gut health and productive performance. However, microbial signatures associated with productivity remain elusive because of the high variability of the microbiota of individual birds resulting in multiple and sometimes contradictory profiles associated with poor or high performance. The high costs associated with the testing and the need for the terminal sampling of a large number of birds for the collection of gut contents also make this tool of limited use in commercial settings. This review highlights the existing literature on the chicken digestive system and associated microbiota; factors affecting the gut microbiota and emergence of the major chicken enteric diseases coccidiosis and necrotic enteritis; methods to evaluate gut health and their association with performance; main issues in investigating chicken microbial populations; and the relationship of microbial profiles and production outcomes. Emphasis is given to emerging noninvasive and easy-to-collect sampling methods that could be used to monitor gut health and microbiological changes in commercial flocks.Maintenance of "gut health" is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to evaluate it is still lacking. In research settings, monitoring of gut microbiota has gained great attention as shifts in microbial community composition have been associated with gut health and productive performance. However, microbial signatures associated with productivity remain elusive because of the high variability of the microbiota of individual birds resulting in multiple and sometimes contradictory profiles associated with poor or high performance. The high costs associated with the testing and the need for the terminal sampling of a large number of birds for the collection of gut contents also make this tool of limited use in commercial settings. This review highlights the existing literature on the chicken digestive system and associated microbiota; factors affecting the gut microbiota and emergence of the major chicken enteric diseases coccidiosis and necrotic enteritis; methods to evaluate gut health and their association with performance; main issues in investigating chicken microbial populations; and the relationship of microbial profiles and production outcomes. Emphasis is given to emerging noninvasive and easy-to-collect sampling methods that could be used to monitor gut health and microbiological changes in commercial flocks.
ArticleNumber 101612
Author Bindari, Yugal Raj
Gerber, Priscilla F.
Author_xml – sequence: 1
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  orcidid: 0000-0002-8343-8299
  surname: Gerber
  fullname: Gerber, Priscilla F.
  email: pgerber2@une.edu.au
BackLink https://www.ncbi.nlm.nih.gov/pubmed/34872745$$D View this record in MEDLINE/PubMed
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AFPUW
AGKRT
AIGII
AKBMS
AKRWK
AKYEP
ALIPV
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CITATION
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CGR
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ID FETCH-LOGICAL-c550t-6be0d4ff22d31b8ebc1be130495ce8c67349546f85a6f9a1d003ea4d7dda32353
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ISSN 0032-5791
1525-3171
IngestDate Wed Aug 27 01:27:59 EDT 2025
Thu Aug 21 14:32:12 EDT 2025
Thu Jul 10 23:38:54 EDT 2025
Thu Jul 10 18:56:16 EDT 2025
Wed Feb 19 02:27:19 EST 2025
Tue Jul 01 03:55:46 EDT 2025
Thu Apr 24 23:06:02 EDT 2025
Fri Feb 23 02:41:04 EST 2024
IsDoiOpenAccess true
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Issue 1
Keywords gut health
biomarkers
16S rRNA sequencing
flock monitoring
noninvasive sampling
Language English
License This is an open access article under the CC BY-NC-ND license.
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Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
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Snippet Maintenance of “gut health” is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to...
Maintenance of "gut health" is considered a priority in commercial chicken farms, although a precise definition of what constitutes gut health and how to...
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SubjectTerms 16S rRNA sequencing
Animals
biomarkers
Chickens
coccidiosis
community structure
Data Collection
flock monitoring
Gastrointestinal Microbiome
gastrointestinal system
gut health
intestinal microorganisms
microbial communities
Microbiology and Food Safety
necrotic enteritis
noninvasive sampling
Title Centennial Review: Factors affecting the chicken gastrointestinal microbial composition and their association with gut health and productive performance
URI https://dx.doi.org/10.1016/j.psj.2021.101612
https://www.ncbi.nlm.nih.gov/pubmed/34872745
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