Global distribution and diversity of marine Verrucomicrobia
Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine M...
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Published in | The ISME Journal Vol. 6; no. 8; pp. 1499 - 1505 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
01.08.2012
Nature Publishing Group |
Subjects | |
Online Access | Get full text |
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Abstract | Verrucomicrobia
is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions.
Verrucomicrobia
were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences,
Verrucomicrobia
constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of
Verrucomicrobia
displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions,
Verrucomicrobia
community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of
Verrucomicrobia
lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean. |
---|---|
AbstractList | Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions. Verrucomicrobia were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences, Verrucomicrobia constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of Verrucomicrobia displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions, Verrucomicrobia community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of Verrucomicrobia lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean. Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine environment. To address this, we analyzed the marine microbial community composition in 506 samples from the International Census of Marine Microbes as well as 11 coastal samples taken from the California Current. These samples from both the water column and sediments covered a wide range of environmental conditions. Verrucomicrobia were present in 98% of the analyzed samples, and thus appeared nearly ubiquitous in the ocean. Based on the occurrence of amplified 16S ribosomal RNA sequences, Verrucomicrobia constituted on average 2% of the water column and 1.4% of the sediment bacterial communities. The diversity of Verrucomicrobia displayed a biogeography at multiple taxonomic levels and thus, specific lineages appeared to have clear habitat preference. We found that subdivision 1 and 4 generally dominated marine bacterial communities, whereas subdivision 2 was more frequent in low salinity waters. Within the subdivisions, Verrucomicrobia community composition were significantly different in the water column compared with sediment as well as within the water column along gradients of salinity, temperature, nitrate, depth and overall water column depth. Although we still know little about the ecophysiology of Verrucomicrobia lineages, the ubiquity of this phylum suggests that it may be important for the biogeochemical cycle of carbon in the ocean. |
Author | Mark Welch, David B Fuhrman, Jed A Sogin, Mitchell L Hatosy, Stephen Martiny, Adam C Freitas, Sara Huse, Susan M |
Author_xml | – sequence: 1 givenname: Sara surname: Freitas fullname: Freitas, Sara organization: Department of Earth System Science, University of California – sequence: 2 givenname: Stephen surname: Hatosy fullname: Hatosy, Stephen organization: Department of Ecology and Evolutionary Biology, University of California – sequence: 3 givenname: Jed A surname: Fuhrman fullname: Fuhrman, Jed A organization: Marine Environmental Biology Section, University of Southern California – sequence: 4 givenname: Susan M surname: Huse fullname: Huse, Susan M organization: Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory – sequence: 5 givenname: David B surname: Mark Welch fullname: Mark Welch, David B organization: Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory – sequence: 6 givenname: Mitchell L surname: Sogin fullname: Sogin, Mitchell L organization: Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory – sequence: 7 givenname: Adam C surname: Martiny fullname: Martiny, Adam C email: amartiny@uci.edu organization: Department of Earth System Science, University of California, Department of Ecology and Evolutionary Biology, University of California |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22318305$$D View this record in MEDLINE/PubMed |
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is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine... Verrucomicrobia is a bacterial phylum that is commonly detected in soil, but little is known about the distribution and diversity of this phylum in the marine... |
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SubjectTerms | 631/158/852 631/326/2565/855 631/326/41/2535 Bacteria Biodiversity Biogeochemical cycles Biogeochemistry Biogeography Biomedical and Life Sciences Census Community composition Ecology Ecophysiology Ecosystem Environmental conditions Evolutionary Biology Geologic Sediments - chemistry Geologic Sediments - microbiology Habitat preferences Life Sciences Marine environment Microbial Ecology Microbial Genetics and Genomics Microbiology Nitrates Original original-article Pacific Ocean RNA, Ribosomal, 16S - genetics Salinity Sediments Temperature Verrucomicrobia Verrucomicrobia - classification Verrucomicrobia - genetics Verrucomicrobia - physiology Water column Water depth Water Microbiology |
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Title | Global distribution and diversity of marine Verrucomicrobia |
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