Discovery of a small-molecule inhibitor and cellular probe of Keap1–Nrf2 protein–protein interaction
A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1–Nrf2 protein–protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic s...
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Published in | Bioorganic & medicinal chemistry letters Vol. 23; no. 10; pp. 3039 - 3043 |
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Main Authors | , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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Elsevier Ltd
15.05.2013
Elsevier |
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Abstract | A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1–Nrf2 protein–protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic separation demonstrated that Keap1-binding activity resides predominantly in one stereoisomer (SRS)-5 designated as ML334 (LH601A), which is at least 100× more potent than the other stereoisomers. The stereochemistry of the four cis isomers was assigned using X-ray crystallography and confirmed using stereospecific synthesis. (SRS)-5 is functionally active in both an ARE gene reporter assay and an Nrf2 nuclear translocation assay. The stereospecific nature of binding between (SRS)-5 and Keap1 as well as the preliminary but tractable structure–activity relationships support its use as a lead for our ongoing optimization |
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AbstractList | A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1–Nrf2 protein–protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic separation demonstrated that Keap1-binding activity resides predominantly in one stereoisomer (SRS)-5 designated as ML334 (LH601A), which is at least 100× more potent than the other stereoisomers. The stereochemistry of the four cis isomers was assigned using X-ray crystallography and confirmed using stereospecific synthesis. (SRS)-5 is functionally active in both an ARE gene reporter assay and an Nrf2 nuclear translocation assay. The stereospecific nature of binding between (SRS)-5 and Keap1 as well as the preliminary but tractable structure–activity relationships support its use as a lead for our ongoing optimization A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1-Nrf2 protein-protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic separation demonstrated that Keap1-binding activity resides predominantly in one stereoisomer (SRS)-5 designated as ML334 (LH601A), which is at least 100× more potent than the other stereoisomers. The stereochemistry of the four cis isomers was assigned using X-ray crystallography and confirmed using stereospecific synthesis. (SRS)-5 is functionally active in both an ARE gene reporter assay and an Nrf2 nuclear translocation assay. The stereospecific nature of binding between (SRS)-5 and Keap1 as well as the preliminary but tractable structure-activity relationships support its use as a lead for our ongoing optimization. A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1-Nrf2 protein protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic separation demonstrated that Keap1-binding activity resides predominantly in one stereoisomer (SRS)-5 designated as ML334 (LH601A), which is at least 100x more potent than the other stereoisomers. The stereochemistry of the four cis isomers was assigned using X-ray crystallography and confirmed using stereospecific synthesis. (SRS)-5 is functionally active in both an ARE gene reporter assay and an Nrf2 nuclear translocation assay. The stereospecific nature of binding between (SRS)-5 and Keap1 as well as the preliminary but tractable structure activity relationships support its use as a lead for our ongoing optimization (C) 2013 Elsevier Ltd. All rights reserved. A high-throughput screen (HTS) of the MLPCN library using a homogenous fluorescence polarization assay identified a small molecule as a first-in-class direct inhibitor of Keap1-Nrf2 protein-protein interaction. The HTS hit has three chiral centers; a combination of flash and chiral chromatographic separation demonstrated that Keap1-binding activity resides predominantly in one stereoisomer ( SRS )- 5 designated as ML334 (LH601A), which is at least 100× more potent than the other stereoisomers. The stereochemistry of the four cis isomers was assigned using X-ray crystallography and confirmed using stereospecific synthesis. ( SRS )- 5 is functionally active in both an ARE gene reporter assay and an Nrf2 nuclear translocation assay. The stereospecific nature of binding between ( SRS )- 5 and Keap1 as well as the preliminary but tractable structure-activity relationships support its use as a lead for our ongoing optimization. |
Author | Shen, Jian Palmer, Michelle Kong, Ah-Ng Tony Chen, Lin Kerrigan, John E. Beamer, Lesa J. Chen, Yu Emge, Thomas J. Munoz, Benito Magesh, Sadagopan Dandapani, Sivaraman Wang, Lili Hu, Longqin Inoyama, Daigo Lewis, Timothy A. Khodier, Carol Schreiber, Stuart L. |
AuthorAffiliation | a Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA c Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA b The Cancer Institute of New Jersey, New Brunswick, NJ 08901, USA d Department of Biochemistry, University of Missouri, Columbia, MO, USA e Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA f Department of Pharmaceutics, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA |
AuthorAffiliation_xml | – name: f Department of Pharmaceutics, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – name: e Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – name: b The Cancer Institute of New Jersey, New Brunswick, NJ 08901, USA – name: d Department of Biochemistry, University of Missouri, Columbia, MO, USA – name: a Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – name: c Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA |
Author_xml | – sequence: 1 givenname: Longqin surname: Hu fullname: Hu, Longqin email: LongHu@rutgers.edu organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 2 givenname: Sadagopan surname: Magesh fullname: Magesh, Sadagopan organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 3 givenname: Lin surname: Chen fullname: Chen, Lin organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 4 givenname: Lili surname: Wang fullname: Wang, Lili organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 5 givenname: Timothy A. surname: Lewis fullname: Lewis, Timothy A. organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 6 givenname: Yu surname: Chen fullname: Chen, Yu organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 7 givenname: Carol surname: Khodier fullname: Khodier, Carol organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 8 givenname: Daigo surname: Inoyama fullname: Inoyama, Daigo organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 9 givenname: Lesa J. surname: Beamer fullname: Beamer, Lesa J. organization: Department of Biochemistry, University of Missouri, Columbia, MO, USA – sequence: 10 givenname: Thomas J. surname: Emge fullname: Emge, Thomas J. organization: Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 11 givenname: Jian surname: Shen fullname: Shen, Jian organization: Department of Medicinal Chemistry, Ernest Mario School of Pharmacy, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA – sequence: 12 givenname: John E. surname: Kerrigan fullname: Kerrigan, John E. organization: The Cancer Institute of New Jersey, New Brunswick, NJ 08901, USA – sequence: 13 givenname: Ah-Ng Tony surname: Kong fullname: Kong, Ah-Ng Tony organization: The Cancer Institute of New Jersey, New Brunswick, NJ 08901, USA – sequence: 14 givenname: Sivaraman surname: Dandapani fullname: Dandapani, Sivaraman organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 15 givenname: Michelle surname: Palmer fullname: Palmer, Michelle organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 16 givenname: Stuart L. surname: Schreiber fullname: Schreiber, Stuart L. organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA – sequence: 17 givenname: Benito surname: Munoz fullname: Munoz, Benito organization: Chemical Biology Platform and Probe Development Center, Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/23562243$$D View this record in MEDLINE/PubMed |
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Keywords | Keap1 Nrf2 activation Nrf2 Inhibitors of protein–protein interaction TARGET Inhibitors of protein-protein interaction PATHWAY BARDOXOLONE METHYL MODULATORS KIDNEY-FUNCTION |
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PublicationDate | 2013-05-15 |
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PublicationTitle | Bioorganic & medicinal chemistry letters |
PublicationTitleAbbrev | BIOORG MED CHEM LETT |
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PublicationYear | 2013 |
Publisher | Elsevier Ltd Elsevier |
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SubjectTerms | Chemistry Chemistry, Medicinal Chemistry, Organic chromatography cis-trans isomers Crystallography, X-Ray Dose-Response Relationship, Drug Drug Discovery fluorescence Fluorescence Polarization High-Throughput Screening Assays Humans Inhibitors of protein–protein interaction Intracellular Signaling Peptides and Proteins - metabolism Isoquinolines - chemistry Isoquinolines - pharmacology Keap1 Kelch-Like ECH-Associated Protein 1 Life Sciences & Biomedicine Models, Molecular Molecular Imaging Molecular Probes - chemistry Molecular Probes - pharmacology Molecular Structure NF-E2-Related Factor 2 - metabolism Nrf2 Nrf2 activation Pharmacology & Pharmacy Phthalimides - chemistry Phthalimides - pharmacology Physical Sciences Protein Binding - drug effects protein-protein interactions reporter genes Science & Technology Small Molecule Libraries - chemistry Small Molecule Libraries - pharmacology stereochemistry stereoisomers Structure-Activity Relationship structure-activity relationships X-ray diffraction |
Title | Discovery of a small-molecule inhibitor and cellular probe of Keap1–Nrf2 protein–protein interaction |
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