Iterative multi-atlas-based multi-image segmentation with tree-based registration

• Published in: NeuroImage (Orlando, Fla.) Vol. 59; no. 1; pp. 422 - 430
• Main Authors: Jia, Hongjun, Yap, Pew-Thian, Shen, Dinggang
• Format: Journal Article
• Language: English
• Published: United States Elsevier Inc 02.01.2012; Elsevier Limited
• Subjects: Accuracy; Algorithms; Brain - anatomy & histology; Brain Mapping - methods; Computer graphics; Groupwise registration; Groupwise segmentation; Humans; Image Interpretation, Computer-Assisted - methods; Intermediate template; Labeling; Methods; Multiple atlases; Pattern Recognition, Automated - methods; Software; Multiple atlases; Groupwise segmentation; Intermediate template; Groupwise registration
• DOI: 10.1016/j.neuroimage.2011.07.036
• ISSN: 1053-8119; 1095-9572

In this paper, we present a multi-atlas-based framework for accurate, consistent and simultaneous segmentation of a group of target images. Multi-atlas-based segmentation algorithms consider concurrently complementary information from multiple atlases to produce optimal segmentation outcomes. However, the accuracy of these algorithms relies heavily on the precise alignment of the atlases with the target image. In particular, the commonly used pairwise registration may result in inaccurate alignment especially between images with large shape differences. Additionally, when segmenting a group of target images, most current methods consider these images independently with disregard of their correlation, thus resulting in inconsistent segmentations of the same structures across different target images. We propose two novel strategies to address these limitations: 1) a novel tree-based groupwise registration method for concurrent alignment of both the atlases and the target images, and 2) an iterative groupwise segmentation method for simultaneous consideration of segmentation information propagated from all available images, including the atlases and other newly segmented target images. Evaluation based on various datasets indicates that the proposed multi-atlas-based multi-image segmentation (MABMIS) framework yields substantial improvements in terms of consistency and accuracy over methods that do not consider the group of target images holistically. ► A groupwise framework is proposed for multi-atlas-based multi-image segmentation. ► The labeling results on the target image group are iteratively updated. ► The segmentation accuracy and consistency can be greatly improved.