Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4
Summary Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher t...
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| Published in | Environmental microbiology Vol. 13; no. 12; pp. 3289 - 3309 |
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| Main Authors | , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Oxford, UK
Blackwell Publishing Ltd
01.12.2011
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Summary
Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher than at neutral pH because both cytoplasmic pH homeostasis and ATP synthesis require more energy. The alkaliphile also tolerates a cytoplasmic pH > 9.0 at external pH values at which the pH homeostasis capacity is exceeded, and manages other stresses that are exacerbated at alkaline pH, e.g. sodium, oxidative and cell wall stresses. The genome of B. pseudofirmus OF4 includes two plasmids that are lost from some mutants without viability loss. The plasmids may provide a reservoir of mobile elements that promote adaptive chromosomal rearrangements under particular environmental conditions. The genome also reveals a more acidic pI profile for proteins exposed on the outer surface than found in neutralophiles. A large array of transporters and regulatory genes are predicted to protect the alkaliphile from its overlapping stresses. In addition, unanticipated metabolic versatility was observed, which could ensure requisite energy for alkaliphily under diverse conditions. |
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| AbstractList | Summary
Bacillus pseudofirmus
OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher than at neutral pH because both cytoplasmic pH homeostasis and ATP synthesis require more energy. The alkaliphile also tolerates a cytoplasmic pH > 9.0 at external pH values at which the pH homeostasis capacity is exceeded, and manages other stresses that are exacerbated at alkaline pH, e.g. sodium, oxidative and cell wall stresses. The genome of
B. pseudofirmus
OF4 includes two plasmids that are lost from some mutants without viability loss. The plasmids may provide a reservoir of mobile elements that promote adaptive chromosomal rearrangements under particular environmental conditions. The genome also reveals a more acidic pI profile for proteins exposed on the outer surface than found in neutralophiles. A large array of transporters and regulatory genes are predicted to protect the alkaliphile from its overlapping stresses. In addition, unanticipated metabolic versatility was observed, which could ensure requisite energy for alkaliphily under diverse conditions. Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non-fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher than at neutral pH because both cytoplasmic pH homeostasis and ATP synthesis require more energy. The alkaliphile also tolerates a cytoplasmic pH > 9.0 at external pH values at which the pH homeostasis capacity is exceeded, and manages other stresses that are exacerbated at alkaline pH, e.g. sodium, oxidative and cell wall stresses. The genome of B. pseudofirmus OF4 includes two plasmids that are lost from some mutants without viability loss. The plasmids may provide a reservoir of mobile elements that promote adaptive chromosomal rearrangements under particular environmental conditions. The genome also reveals a more acidic p I profile for proteins exposed on the outer surface than found in neutralophiles. A large array of transporters and regulatory genes are predicted to protect the alkaliphile from its overlapping stresses. In addition, unanticipated metabolic versatility was observed, which could ensure requisite energy for alkaliphily under diverse conditions. Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non-fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher than at neutral pH because both cytoplasmic pH homeostasis and ATP synthesis require more energy. The alkaliphile also tolerates a cytoplasmic pH > 9.0 at external pH values at which the pH homeostasis capacity is exceeded, and manages other stresses that are exacerbated at alkaline pH, e.g. sodium, oxidative and cell wall stresses. The genome of B. pseudofirmus OF4 includes two plasmids that are lost from some mutants without viability loss. The plasmids may provide a reservoir of mobile elements that promote adaptive chromosomal rearrangements under particular environmental conditions. The genome also reveals a more acidic pI profile for proteins exposed on the outer surface than found in neutralophiles. A large array of transporters and regulatory genes are predicted to protect the alkaliphile from its overlapping stresses. In addition, unanticipated metabolic versatility was observed, which could ensure requisite energy for alkaliphily under diverse conditions. Summary Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can withstand large sudden increases in external pH. It is a model organism for studies of bioenergetics at high pH, at which energy demands are higher than at neutral pH because both cytoplasmic pH homeostasis and ATP synthesis require more energy. The alkaliphile also tolerates a cytoplasmic pH > 9.0 at external pH values at which the pH homeostasis capacity is exceeded, and manages other stresses that are exacerbated at alkaline pH, e.g. sodium, oxidative and cell wall stresses. The genome of B. pseudofirmus OF4 includes two plasmids that are lost from some mutants without viability loss. The plasmids may provide a reservoir of mobile elements that promote adaptive chromosomal rearrangements under particular environmental conditions. The genome also reveals a more acidic pI profile for proteins exposed on the outer surface than found in neutralophiles. A large array of transporters and regulatory genes are predicted to protect the alkaliphile from its overlapping stresses. In addition, unanticipated metabolic versatility was observed, which could ensure requisite energy for alkaliphily under diverse conditions. |
| Author | Earl, Joshua Pagni, Sarah Ehrlich, Garth D. Janto, Benjamin Fackelmayer, Oliver J. Li, Gang Kolstø, Anne-Brit Smith, Terry-Ann Boissy, Robert Paulsen, Ian T. Ma, Yanhe Krulwich, Terry A. Ito, Masahiro Hicks, David B. Xue, Yanfen Hu, Fen Z. Tourasse, Nicolas J. Ivey, D. Mack Ahmed, Azad Liu, Jun Elbourne, Liam D.H. Hassan, Karl |
| AuthorAffiliation | 6 Institut de Biologie Physico-Chimique, Université Pierre et Marie Curie, 75005 Paris, France 8 Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, P. R. China 4 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia 2109 5 Laboratory for Microbial Dynamics and Department of Pharmaceutical Biosciences, University of Oslo, Blindern 0316 Oslo, Norway 7 Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 7270 3 Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, New York 10029 1 Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, Pennsylvania 15212 2 Graduate School of Life Sciences, Toyo University, Ora-gun, Gunma 374-0193, Japan |
| AuthorAffiliation_xml | – name: 3 Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, New York 10029 – name: 4 Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, Australia 2109 – name: 2 Graduate School of Life Sciences, Toyo University, Ora-gun, Gunma 374-0193, Japan – name: 1 Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, Pennsylvania 15212 – name: 7 Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 7270 – name: 8 Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, P. R. China – name: 6 Institut de Biologie Physico-Chimique, Université Pierre et Marie Curie, 75005 Paris, France – name: 5 Laboratory for Microbial Dynamics and Department of Pharmaceutical Biosciences, University of Oslo, Blindern 0316 Oslo, Norway |
| Author_xml | – sequence: 1 givenname: Benjamin surname: Janto fullname: Janto, Benjamin organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 2 givenname: Azad surname: Ahmed fullname: Ahmed, Azad organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 3 givenname: Masahiro surname: Ito fullname: Ito, Masahiro organization: Graduate School of Life Sciences, Toyo University, Ora-gun, Gunma 374-0193, Japan – sequence: 4 givenname: Jun surname: Liu fullname: Liu, Jun organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA – sequence: 5 givenname: David B. surname: Hicks fullname: Hicks, David B. organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA – sequence: 6 givenname: Sarah surname: Pagni fullname: Pagni, Sarah organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA – sequence: 7 givenname: Oliver J. surname: Fackelmayer fullname: Fackelmayer, Oliver J. organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA – sequence: 8 givenname: Terry-Ann surname: Smith fullname: Smith, Terry-Ann organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA – sequence: 9 givenname: Joshua surname: Earl fullname: Earl, Joshua organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 10 givenname: Liam D.H. surname: Elbourne fullname: Elbourne, Liam D.H. organization: Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney 2109, Australia – sequence: 11 givenname: Karl surname: Hassan fullname: Hassan, Karl organization: Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney 2109, Australia – sequence: 12 givenname: Ian T. surname: Paulsen fullname: Paulsen, Ian T. organization: Department of Chemistry and Biomolecular Sciences, Macquarie University, Sydney 2109, Australia – sequence: 13 givenname: Anne-Brit surname: Kolstø fullname: Kolstø, Anne-Brit organization: Laboratory for Microbial Dynamics and Department of Pharmaceutical Biosciences, University of Oslo, Blindern 0316 Oslo, Norway – sequence: 14 givenname: Nicolas J. surname: Tourasse fullname: Tourasse, Nicolas J. organization: Institut de Biologie Physico-Chimique, Université Pierre et Marie Curie, 75005 Paris, France – sequence: 15 givenname: Garth D. surname: Ehrlich fullname: Ehrlich, Garth D. organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 16 givenname: Robert surname: Boissy fullname: Boissy, Robert organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 17 givenname: D. Mack surname: Ivey fullname: Ivey, D. Mack organization: Department of Biological Sciences, University of Arkansas, Fayetteville, AR 7270, USA – sequence: 18 givenname: Gang surname: Li fullname: Li, Gang organization: Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 19 givenname: Yanfen surname: Xue fullname: Xue, Yanfen organization: Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 20 givenname: Yanhe surname: Ma fullname: Ma, Yanhe organization: Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 21 givenname: Fen Z. surname: Hu fullname: Hu, Fen Z. email: fhu@wpahs.org organization: Allegheny General Hospital, Allegheny-Singer Research Institute, Center for Genomic Sciences and Department of Microbiology and Immunology, Drexel University College of Medicine, Allegheny Campus, Pittsburgh, PA 15212, USA – sequence: 22 givenname: Terry A. surname: Krulwich fullname: Krulwich, Terry A. email: fhu@wpahs.org organization: Department of Pharmacology and Systems Therapeutics, Mount Sinai School of Medicine, New York, NY 10029, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/21951522$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1016/j.bbabio.2006.02.015 10.1111/j.1365-2958.2008.06194.x 10.1074/jbc.M808738200 10.1042/bj1440087 10.1128/jb.178.17.5071-5079.1996 10.1093/molbev/msp259 10.1046/j.1365-2958.2001.02576.x 10.1128/JB.182.21.5969-5981.2000 10.1016/j.bbabio.2010.02.028 10.1016/S0378-1119(99)00009-8 10.1016/j.bbalip.2010.12.009 10.1101/gr.GR-1587R 10.1111/j.1365-2958.2010.07426.x 10.1007/s00203-002-0408-4 10.1016/j.nbt.2010.02.014 10.1110/ps.041029805 10.1038/191144a0 10.1016/S0065-2911(09)05501-5 10.1128/JB.180.9.2450-2458.1998 10.1099/00221287-145-12-3431 10.1146/annurev-micro-090110-102815 10.1128/jb.179.3.863-870.1997 10.1128/JB.185.4.1289-1298.2003 10.1038/370379a0 10.1128/MMBR.63.4.735-750.1999 10.1007/s10295-011-0968-x 10.1093/bioinformatics/bti054 10.1128/JB.00449-11 10.1128/JB.181.21.6600-6606.1999 10.1016/S0006-3495(03)74565-2 10.1016/S0014-5793(02)03292-1 10.1111/j.1574-6941.2006.00060.x 10.1074/jbc.M801019200 10.1126/science.1065635 10.1371/journal.pbio.1000443 10.1093/emboj/19.17.4473 10.1261/rna.2126203 10.1093/nar/gkg049 10.1111/j.1365-2672.2006.03087.x 10.1093/nar/25.17.3389 10.1016/S0021-9258(18)89230-4 10.1271/bbb.63.1134 10.1046/j.1365-2958.2002.03050.x 10.1128/JB.01526-06 10.1016/S0021-9258(18)54205-8 10.1074/jbc.M704023200 10.1099/00221287-137-10-2375 10.1002/(SICI)1099-1387(199805)4:3<147::AID-PSC136>3.0.CO;2-C 10.1128/JB.01482-07 10.1074/jbc.274.37.26179 10.1128/9781555815813.ch24 10.1046/j.1365-2958.1998.00766.x 10.1111/j.1365-2958.2004.04367.x 10.1128/jb.168.1.334-340.1986 10.1128/aem.57.4.901-909.1991 10.1074/jbc.M110.192468 10.1128/jb.176.11.3111-3116.1994 10.1128/JB.182.23.6557-6564.2000 10.1046/j.1365-2958.1997.4441809.x 10.1159/000308512 10.1111/j.1574-6968.2006.00122.x 10.1128/JB.01347-06 10.1111/j.1365-2958.2008.06483.x 10.1038/75843 10.1093/nar/gkp186 10.1016/j.bbamem.2005.09.010 10.1073/pnas.0402692101 10.1146/annurev.biochem.77.061606.160747 10.1038/nrmicro2549 10.1128/AEM.01393-10 10.1074/jbc.M110.165084 10.1146/annurev.mi.43.100189.002251 10.1021/bi2005009 10.1128/9781555815813.ch23 10.1016/S0065-2911(02)46002-X 10.1111/j.1365-2958.2006.05179.x 10.2217/fmb.09.76 10.1093/nar/gkg019 10.1093/bioinformatics/btq249 10.1073/pnas.0605909103 10.1128/jb.171.3.1744-1746.1989 10.1016/j.cbpa.2009.03.008 10.1016/j.tig.2007.01.006 10.1007/s00792-005-0451-6 10.1128/jb.175.11.3628-3635.1993 10.1007/PL00010713 10.1186/gb-2004-5-5-r37 10.1128/AAC.48.8.2888-2896.2004 10.1128/9781555816452.ch14 10.1093/molbev/msq269 10.1111/j.1365-2958.2004.04173.x 10.1074/jbc.M407268200 10.1073/pnas.1832982100 10.1016/S1389-1723(02)80066-4 10.1074/jbc.M401206200 10.1007/s007920050091 10.1111/j.1365-2958.1992.tb01473.x 10.1021/bi00230a019 10.1016/j.jmb.2010.06.059 10.1093/nar/gkn766 10.1128/JB.167.3.766-773.1986 10.1093/bioinformatics/btp157 10.1111/j.1574-6976.2008.00127.x 10.1126/science.1175439 10.1128/JB.185.7.2379-2382.2003 10.1074/jbc.M505070200 10.1111/j.1365-2958.1994.tb01329.x 10.1074/jbc.M708134200 10.1006/bbrc.1995.1281 10.1046/j.1365-2958.2003.03786.x 10.1016/S0966-842X(02)02345-4 10.1099/mic.0.2007/005504-0 10.1093/nar/gkn372 10.1186/1471-2164-9-75 10.1016/j.bbamem.2009.09.008 10.1111/j.1365-2958.1995.tb02253.x 10.1371/journal.pone.0008614 10.1111/j.1365-2958.2009.06842.x 10.1046/j.1365-2958.2001.02489.x 10.1046/j.1365-2958.1997.4611824.x 10.1111/j.1365-2958.2011.07679.x 10.1007/s007920070010 10.1016/S0005-2760(97)00086-6 10.1080/09593331003762807 10.1271/bbb1961.55.2643 10.1128/jb.179.12.3851-3857.1997 10.1146/annurev.micro.091208.073241 10.1093/nar/30.1.179 10.1093/nar/28.21.4317 10.1101/gr.190201 10.1128/JB.185.17.5133-5147.2003 10.1002/prot.20935 10.1006/jmbi.2001.5372 |
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| References | Rabus, R., Jack, D.L., Kelly, D.J., and Saier, M.H., Jr (1999) TRAP transporters: an ancient family of extracytoplasmic solute-receptor-dependent secondary active transporters. Microbiology 145: 3431-3445. Schwartz, R., Ting, C.S., and King, J. (2001) Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life. Genome Res 11: 703-709. Guffanti, A.A., Finkelthal, O., Hicks, D.B., Falk, L., Sidhu, A., Garro, A., and Krulwich, T.A. (1986) Isolation and characterization of new facultatively alkalophilic strains of Bacillus species. J Bacteriol 167: 766-773. Guo, D., and Tropp, B.E. (1998) Cloning of the Bacillus firmus OF4 cls gene and characterization of its gene product. Biochim Biophys Acta 1389: 34-42. Wang, Z., Hicks, D.B., Guffanti, A.A., Baldwin, K., and Krulwich, T.A. (2004) Replacement of amino acid sequence features of a- and c-subunits of ATP synthases of alkaliphilic Bacillus with the Bacillus consensus sequence results in defective oxidative phosphorylation and non-fermentative growth at pH 10.5. J Biol Chem 279: 26546-26554. Barry, S.M., and Challis, G.L. (2009) Recent advances in siderophore biosynthesis. Curr Opin Chem Biol 13: 205-215. Stabell, F.B., Tourasse, N.J., and Kolstø, A.B. (2009) A conserved 3′ extension in unusual group II introns is important for efficient second-step splicing. Nucleic Acids Res 37: 3202-3214. von Blohn, C., Kempf, B., Kappes, R.M., and Bremer, E. (1997) Osmostress response in Bacillus subtilis: characterization of a proline uptake system (OpuE) regulated by high osmolarity and the alternative transcription factor sigma B. Mol Microbiol 25: 175-187. Hyyryläinen, H.L., Bolhuis, A., Darmon, E., Muukkonen, L., Koski, P., Vitikainen, M., et al. (2001) A novel two-component regulatory system in Bacillus subtilis for the survival of severe secretion stress. Mol Microbiol 41: 1159-1172. Helmann, J.D. (2002) The extracytoplasmic function (ECF) sigma factors. Adv Microb Physiol 46: 47-110. Aono, R., Ito, M., and Machida, T. (1999) Contribution of the cell wall component teichuronopeptide to pH homeostasis and alkaliphily in the alkaliphile Bacillus lentus C-125. J Bacteriol 181: 6600-6606. Hicks, D.B., Wang, Z., Wei, Y., Kent, R., Guffanti, A.A., Banciu, H., et al. (2003) A tenth atp gene and the conserved atpl gene of a Bacillus atp operon have a role in Mg2+ uptake. Proc Natl Acad Sci USA 100: 10213-10218. Pietack, N., Becher, D., Schmidt, S.R., Saier, M.H., Hecker, M., Commichau, F.M., and Stulke, J. (2010) In vitro phosphorylation of key metabolic enzymes from Bacillus subtilis: PrkC phosphorylates enzyme from different branches of basic metabolism. J Mol Microbiol Biotechnol 18: 129-140. Dai, L., Toor, N., Olson, R., Keeping, A., and Zimmerly, S. (2003) Database for mobile group II introns. Nucleic Acids Res 31: 424-426. Guffanti, A.A., and Hicks, D.B. (1991) Molar growth yields and bioenergetic parameters of extremely alkaliphilic Bacillus species in batch cultures, and growth in a chemostat at pH 10.5. J Gen Microbiol 137: 2375-2379. Dubrac, S., Bisicchia, P., Devine, K.M., and Msadek, T. (2008) A matter of life and death: cell wall homeostasis and the WalKR (YycG) essential signal transduction pathway. Mol Microbiol 70: 1307-1322. Mascher, T., Margulis, N.G., Wang, T., Ye, R.W., and Helmann, J.D. (2003) Cell wall stress responses in Bacillus subtilis: the regulatory network of the bacitracin stimulon. Mol Microbiol 50: 1591-1604. Ozyamak, E., Black, S.S., Walker, C.A., Maclean, M.J., Bartless, W., Miller, S., and Booth, I.R. (2010) The critical role of S-lactoylglutathione formation during methylglyoxal detoxification in Escherichia coli. Mol Microbiol 78: 1577-1590. Sarethy, I.P., Saxena, Y., Kapoor, A., Sharma, M., Sharma, S.K., Gupta, V., and Gupta, S. (2011) Alkaliphilic bacteria: applications in industrial technology. J Ind Microbiol Biotechnol 38: 769-790. Gusarov, I., Shatalin, K., Starodubtseva, M., and Nudler, E. (2009) Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics. Science 325: 1380-1384. Lang, B.F., Laforest, M.J., and Burger, G. (2007) Mitochondrial introns: a critical view. Trends Genet 23: 119-125. Kitada, M., Kosono, S., and Kudo, T. (2000) The Na+/H+ antiporter of alkaliphilic Bacillus sp. Extremophiles 4: 253-258. Horikoshi, K., and Akiba, T. (1982) Alkalophilic Microorganisms. Heideberg, Germany: Springer-Verlag. Cherepanov, D.A., Feniouk, B.A., Junge, W., and Mulkidjanian, A.Y. (2003) Low dielectric permittivity of water at the membrane interface: effect on the energy coupling mechanism in biological membranes. Biophys J 85: 1307-1316. Fujisawa, M., Fackelmayer, O., Liu, J., Krulwich, T.A., and Hicks, D.B. (2010) The ATP synthase a-subunit of extreme alkaliphiles is a distinct variant. J Biol Chem 285: 32105-32115. Sturr, M.G., Guffanti, A.A., and Krulwich, T.A. (1994) Growth and bioenergetics of alkaliphilic Bacillus firmus OF4 in continuous culture at high pH. J Bacteriol 176: 3111-3116. Tourasse, N.J., Stabell, F.B., and Kolstø, A.B. (2010) Structural and functional evolution of group II intron ribozymes: insights from unusual elements carrying a 3′ extension. N Biotechnol 27: 204-211. Kappes, R.M., Kempf, B., and Bremer, E. (1996) Three transport systems for the osmoprotectant glycine betaine operate in Bacillus subtilis: characterization of OpuD. J Bacteriol 178: 5071-5079. Preiss, L., Yildiz, Ö., Hicks, D., Krulwich, T.A., and Meier, T. (2010) A new type of proton coordination in an F1F0-ATP synthase rotor ring. PLoS Biol 8: e1000443. Gouy, M., Guindon, S., and Gascuel, O. (2010) SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224. Mesnage, S., Fontaine, T., Mignot, T., Delepierre, M., Mock, M., and Fouet, A. (2000) Bacterial SLH domain proteins are non-covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation. EMBO J 19: 4473-4484. Brändén, M., Sandén, T., Brzezinski, P., and Widengren, J. (2006) Localized proton microcircuits at the biological membrane-water interface. Proc Natl Acad Sci USA 103: 19766-19770. Gronstad, A., Jaroszewicz, E., Ito, M., Sturr, M.G., Krulwich, T.A., and Kolstø, A.B. (1998) Physical map of alkaliphilic Bacillus firmus OF4 and detection of a large endogenous plasmid. Extremophiles 2: 447-453. Krulwich, T.A., Federbush, J.G., and Guffanti, A.A. (1985) Presence of a nonmetabolizable solute that is translocated with Na+ enhances Na+-dependent pH homeostasis in an alkalophilic Bacillus. J Biol Chem 260: 4055-4058. van der Laan, J.C., Gerritse, G., Mulleners, L.J., van der Hoek, R.A., and Quax, W.J. (1991) Cloning, characterization, and multiple chromosomal integration of a Bacillus alkaline protease gene. Appl Environ Microbiol 57: 901-909. Kruse, T., Bork-Jensen, J., and Gerdes, K. (2005) The morphogenetic MreBCD proteins of Escherichia coli form an essential membrane-bound complex. Mol Microbiol 55: 78-89. Haines, T.H. (2009) A new look at cardiolipin. Biochim Biophys Acta 1788: 1997-2002. Tourasse, N.J., Helgason, E., Økstad, O.A., Hegna, I.K., and Kolstø, A.B. (2006) The Bacillus cereus group: novel aspects of population structure and genome dynamics. J Appl Microbiol 101: 579-593. Nawrocki, E.P., Kolbe, D.L., and Eddy, S.R. (2009) Infernal 1.0: inference of RNA alignments. Bioinformatics 25: 1335-1337. Guffanti, A.A., Blanco, R., Benenson, R.A., and Krulwich, T.A. (1980) Bioenergetic properties of alkaline-tolerant and alkalophilic strains of Bacillus firmus. J Gen Microbiol 119: 79-86. Ren, D., Navarro, B., Xu, H., Yue, L., Shi, Q., and Clapham, D.E. (2001) A prokaryotic voltage-gated sodium channel. Science 294: 2372-2375. Ito, M., Xu, H., Guffanti, A.A., Wei, Y., Zvi, L., Clapham, D.E., and Krulwich, T.A. (2004b) The voltage-gated Na+ channel NavBP has a role in motility, chemotaxis, and pH homeostasis of an alkaliphilic Bacillus. Proc Natl Acad Sci USA 101: 10566-10571. Aono, A., and Horikoshi, K. (1991) Carotenes produced by alkaliphilic yellow-pigmented strains of Bacillus. Agric Biol Chem 55: 2643-2645. Haines, T.H., and Dencher, N.A. (2002) Cardiolipin: a proton trap for oxidative phosphorylation. FEBS Lett 528: 35-39. Kingston, A.W., Subramanian, C., Rock, C.O., and Helmann, J.D. (2011) A σw-dependent stress response in Bacillus subtilis that reduces membrane fluidity. Mol Microbiol 81: 69-79. Yumoto, I. (2002) Bioenergetics of alkaliphilic Bacillus spp. J Biosci Bioeng 93: 342-353. Wei, Y., Southworth, T.W., Kloster, H., Ito, M., Guffanti, A.A., Moir, A., and Krulwich, T.A. (2003) Mutational loss of a K+ and NH4+ transporter affects the growth and endospore formation of alkaliphilic Bacillus pseudofirmus OF4. J Bacteriol 185: 5133-5147. Mitchell, P. (1961) Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism. Nature 191: 144-148. Fujinami, S., and Fujisawa, M. (2010) Industrial application of alkaliphiles and their enzymes - past, present and future. Environ Technol 31: 845-856. Zwieb, C., Gorodkin, J., Knudsen, B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database). Nucleic Acids Res 31: 446-447. Candela, T., and Fouet, A. (2006) Poly-gamma-glutamate in bacteria. Mol Microbiol 60: 1091-1098. Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. Yen, M.-R., Tseng, Y.-H., Nguyen, E.H., Wu, L.-F., and Saier, M.H., Jr (2002) Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system. Arch Microbiol 177: 441-450. Peng, R.-H., Xiong, A.-S., Xue, Y., Fu, X.-Y., Gao, F., Zhao, W., et al. (2008) Microbial biodegradation of polyaromatic hydrocarbons. FEMS Microbiol Rev 32: 927-955. Ito, M., Guffanti, A.A., Zemsky, J., Ivey, D.M., and Krulwich, T.A. (1997) Role of the nhaC-encoded Na+/H+ antiporter of alkaliphilic Bacillus firmus OF4. J Bacteriol 179: 3851-3857. Ito, M., Hicks, D 2007; 189 2008; 190 2002a; 316 1989; 43 2010; 18 1994; 370 2002; 10 2008; 36 2004; 5 2008; 32 2003; 50 1961; 191 2011; 193 2001; 41 2004b; 101 2004; 32 1992; 6 2009; 13 2010; 27 2000; 19 2010; 26 1999; 181 2011; 65 1982 2002; 93 2010; 5 1998; 1389 1989 2010; 8 1997; 179 2010; 31 1980; 119 2009; 63 2007; 282 1997; 25 2011; 81 2004; 48 1998 2010; 285 1999; 228 1985; 260 2003; 31 2010; 1797 2009; 74 2004; 279 2005; 9 2007; 153 2000; 182 1994; 14 2002; 528 1998; 2 2011; 1811 1998; 4 2003; 100 2006; 101 2006; 103 2005; 14 2003; 185 1994; 176 2005; 1717 1991; 57 2000; 4 1991; 55 2000; 7 2008; 9 2011b 2005; 21 2008; 77 1990; 266 2008; 70 1974; 144 2006; 256 2006; 60 2009; 55 2006; 63 2001; 294 2006; 1757 2002; 46 1995; 207 2003; 9 2008; 68 2009; 284 2001; 11 2011; 28 2002b; 45 2003; 85 1996; 178 2007; 23 1993; 175 2009; 325 2011; 286 1998; 180 2010; 78 2009; 1788 2010; 76 2009; 25 1998; 28 2000; 28 2002; 30 1995; 15 1991; 30 2010; 401 2002; 177 2007 2011a; 9 2005 1999; 63 2003 2002 1999; 145 1993; 268 2011; 38 1991; 137 2008; 283 2005; 280 1986; 168 1986; 167 2004a; 53 2011; 50 1999; 274 1989; 171 2009; 4 2005; 55 2009; 37 19801076 - Biochim Biophys Acta. 2009 Oct;1788(10):1997-2002 15980940 - Extremophiles. 2005 Oct;9(5):345-54 10970841 - EMBO J. 2000 Sep 1;19(17):4473-84 11591641 - Genome Res. 2001 Oct;11(10):1641-50 19573695 - Adv Microb Physiol. 2009;55:1-79, 317 15459199 - J Biol Chem. 2004 Dec 24;279(52):54952-62 11029415 - J Bacteriol. 2000 Nov;182(21):5969-81 8195065 - J Bacteriol. 1994 Jun;176(11):3111-6 15024007 - J Biol Chem. 2004 Jun 18;279(25):26546-54 7678007 - J Biol Chem. 1993 Jan 5;268(1):678-85 12554871 - RNA. 2003 Jan;9(1):14-9 16907808 - J Appl Microbiol. 2006 Sep;101(3):579-93 1850294 - Biochemistry. 1991 Apr 23;30(16):3936-42 16689787 - Mol Microbiol. 2006 Jun;60(5):1091-8 16233213 - J Biosci Bioeng. 2002;93(4):342-53 10427704 - Biosci Biotechnol Biochem. 1999 Jun;63(6):1134-7 11743207 - Science. 2001 Dec 14;294(5550):2372-5 20193659 - Biochim Biophys Acta. 2010 Aug;1797(8):1362-77 11902719 - Mol Microbiol. 1997 Jul;25(1):175-87 12207695 - Mol Microbiol. 2002 Sep;45(5):1267-76 9643626 - J Pept Sci. 1998 May;4(3):147-81 19854763 - Mol Biol Evol. 2010 Feb;27(2):221-4 17280737 - Trends Genet. 2007 Mar;23(3):119-25 16487313 - FEMS Microbiol Lett. 2006 Mar;256(1):1-15 10072765 - Gene. 1999 Mar 4;228(1-2):123-32 15243157 - Proc Natl Acad Sci U S A. 2004 Jul 20;101(29):10566-71 21542858 - Mol Microbiol. 2011 Jul;81(1):69-79 12644511 - J Bacteriol. 2003 Apr;185(7):2379-82 20062806 - PLoS One. 2010;5(1):e8614 15608117 - Protein Sci. 2005 Jan;14(1):97-110 19369113 - Curr Opin Chem Biol. 2009 Apr;13(2):205-15 19745150 - Science. 2009 Sep 11;325(5946):1380-4 17975097 - Microbiology. 2007 Nov;153(Pt 11):3894-908 9573198 - J Bacteriol. 1998 May;180(9):2450-8 10881189 - Nat Struct Biol. 2000 Jun;7(6):449-55 19682259 - Mol Microbiol. 2009 Oct;74(2):257-60 17071757 - J Bacteriol. 2007 Jan;189(1):98-108 16624250 - Biochim Biophys Acta. 2006 Aug;1757(8):913-30 2059048 - Appl Environ Microbiol. 1991 Apr;57(4):901-9 9006044 - J Bacteriol. 1997 Feb;179(3):863-70 20689804 - PLoS Biol. 2010;8(8):e1000443 20716528 - J Biol Chem. 2010 Oct 15;285(42):32105-15 18261238 - BMC Genomics. 2008;9:75 20603129 - J Mol Biol. 2010 Sep 3;401(5):757-75 21705586 - J Bacteriol. 2011 Aug;193(16):4199-213 12073657 - Adv Microb Physiol. 2002;46:47-110 11454200 - Mol Microbiol. 2001 Jul;41(1):59-71 11057908 - Extremophiles. 2000 Oct;4(5):253-8 10473570 - J Biol Chem. 1999 Sep 10;274(37):26179-84 16277975 - Biochim Biophys Acta. 2005 Nov 30;1717(2):67-88 19176524 - J Biol Chem. 2009 Mar 27;284(13):8714-25 12520040 - Nucleic Acids Res. 2003 Jan 1;31(1):424-6 16020541 - J Biol Chem. 2005 Sep 16;280(37):32493-8 17636255 - J Biol Chem. 2007 Oct 26;282(43):31147-55 12297275 - FEBS Lett. 2002 Sep 25;528(1-3):35-9 11058132 - Nucleic Acids Res. 2000 Nov 1;28(21):4317-31 7864904 - Biochem Biophys Res Commun. 1995 Feb 27;207(3):978-84 15273097 - Antimicrob Agents Chemother. 2004 Aug;48(8):2888-96 20389117 - J Mol Microbiol Biotechnol. 2010;18(3):129-40 14651641 - Mol Microbiol. 2003 Dec;50(5):1591-604 21663439 - Annu Rev Microbiol. 2011;65:215-38 10585964 - Microbiol Mol Biol Rev. 1999 Dec;63(4):735-50, table of contents 18078384 - Annu Rev Biochem. 2008;77:643-67 9622350 - Mol Microbiol. 1998 Apr;28(2):235-47 21464825 - Nat Rev Microbiol. 2011 May;9(5):330-43 19019149 - Mol Microbiol. 2008 Dec;70(6):1307-22 9443601 - Biochim Biophys Acta. 1998 Jan 5;1389(1):34-42 9190799 - J Bacteriol. 1997 Jun;179(12):3851-7 18394148 - Mol Microbiol. 2008 May;68(3):768-85 10972189 - Extremophiles. 2000 Aug;4(4):209-14 19895217 - Future Microbiol. 2009 Nov;4(9):1137-49 11902724 - Mol Microbiol. 1997 Jul;25(1):3-10 11337469 - Genome Res. 2001 May;11(5):703-9 2679360 - Annu Rev Microbiol. 1989;43:435-63 17981970 - J Bacteriol. 2008 Jan;190(1):363-76 20961964 - Mol Biol Evol. 2011 Feb;28(2):963-83 11866510 - J Mol Biol. 2002 Feb 22;316(3):443-57 11073895 - J Bacteriol. 2000 Dec;182(23):6557-64 20662376 - Environ Technol. 2010 Jul-Aug;31(8-9):845-56 2921248 - J Bacteriol. 1989 Mar;171(3):1744-6 13771349 - Nature. 1961 Jul 8;191:144-8 20219707 - N Biotechnol. 2010 Jul 31;27(3):204-11 8752321 - J Bacteriol. 1996 Sep;178(17):5071-9 17189355 - J Bacteriol. 2007 Mar;189(5):1698-710 18662317 - FEMS Microbiol Rev. 2008 Nov;32(6):927-55 9254694 - Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 7783613 - Mol Microbiol. 1995 Feb;15(3):403-10 17172452 - Proc Natl Acad Sci U S A. 2006 Dec 26;103(52):19766-70 20802068 - Appl Environ Microbiol. 2010 Oct;76(20):6955-61 10542159 - J Bacteriol. 1999 Nov;181(21):6600-6 11752287 - Nucleic Acids Res. 2002 Jan 1;30(1):179-82 19307242 - Bioinformatics. 2009 May 15;25(10):1335-7 9827335 - Extremophiles. 1998 Nov;2(4):447-53 1770352 - J Gen Microbiol. 1991 Oct;137(10):2375-9 11973144 - Trends Microbiol. 2002 May;10(5):209-12 15306009 - Mol Microbiol. 2004 Aug;53(4):1035-49 18953034 - Nucleic Acids Res. 2009 Jan;37(Database issue):D136-40 3093462 - J Bacteriol. 1986 Oct;168(1):334-40 18687689 - J Biol Chem. 2008 Oct 24;283(43):29292-300 18587153 - Nucleic Acids Res. 2008 Aug;36(14):4529-48 12885673 - Biophys J. 2003 Aug;85(2):1307-16 8501066 - J Bacteriol. 1993 Jun;175(11):3628-35 19304998 - Nucleic Acids Res. 2009 Jun;37(10):3202-14 12562800 - J Bacteriol. 2003 Feb;185(4):1289-98 12520048 - Nucleic Acids Res. 2003 Jan 1;31(1):446-7 21479938 - J Ind Microbiol Biotechnol. 2011 Jul;38(7):769-90 3980467 - J Biol Chem. 1985 Apr 10;260(7):4055-8 15034147 - Nucleic Acids Res. 2004;32(5):1792-7 11555295 - Mol Microbiol. 2001 Sep;41(5):1159-72 2327977 - Biochem J. 1990 Mar 15;266(3):933-6 21215325 - Biochim Biophys Acta. 2011 Mar;1811(3):177-85 10627041 - Microbiology. 1999 Dec;145 ( Pt 12):3431-45 15612918 - Mol Microbiol. 2005 Jan;55(1):78-89 1552845 - Mol Microbiol. 1992 Feb;6(3):309-15 21051545 - J Biol Chem. 2011 Jan 21;286(3):2245-60 15128451 - Genome Biol. 2004;5(5):R37 12029389 - Arch Microbiol. 2002 Jun;177(6):441-50 8047144 - Nature. 1994 Aug 4;370(6488):379-82 16532449 - Proteins. 2006 Jun 1;63(4):742-53 7715455 - Mol Microbiol. 1994 Dec;14(5):939-46 4618479 - Biochem J. 1974 Oct;144(1):87-90 19575568 - Annu Rev Microbiol. 2009;63:575-97 21143325 - Mol Microbiol. 2010 Dec;78(6):1577-90 18029357 - J Biol Chem. 2008 Feb 1;283(5):2534-42 e_1_2_5_27_1 e_1_2_5_120_1 e_1_2_5_23_1 e_1_2_5_46_1 e_1_2_5_124_1 e_1_2_5_101_1 e_1_2_5_65_1 e_1_2_5_88_1 e_1_2_5_128_1 e_1_2_5_105_1 e_1_2_5_69_1 Quirk P.G. (e_1_2_5_109_1) 1993; 268 e_1_2_5_61_1 e_1_2_5_84_1 e_1_2_5_42_1 e_1_2_5_15_1 e_1_2_5_38_1 e_1_2_5_132_1 e_1_2_5_11_1 e_1_2_5_34_1 e_1_2_5_57_1 e_1_2_5_113_1 e_1_2_5_136_1 e_1_2_5_7_1 e_1_2_5_99_1 e_1_2_5_117_1 e_1_2_5_3_1 Guffanti A.A. (e_1_2_5_43_1) 1980; 119 e_1_2_5_19_1 e_1_2_5_91_1 e_1_2_5_72_1 e_1_2_5_95_1 e_1_2_5_30_1 e_1_2_5_53_1 Grant W.D. (e_1_2_5_40_1) 2003 e_1_2_5_49_1 e_1_2_5_26_1 e_1_2_5_45_1 e_1_2_5_100_1 e_1_2_5_123_1 e_1_2_5_142_1 e_1_2_5_22_1 e_1_2_5_87_1 e_1_2_5_104_1 e_1_2_5_127_1 e_1_2_5_68_1 e_1_2_5_108_1 Krulwich T.A. (e_1_2_5_80_1) 2011 e_1_2_5_64_1 e_1_2_5_41_1 Sambrook J. (e_1_2_5_115_1) 1989 e_1_2_5_14_1 e_1_2_5_131_1 e_1_2_5_37_1 e_1_2_5_8_1 e_1_2_5_10_1 e_1_2_5_135_1 e_1_2_5_33_1 e_1_2_5_112_1 e_1_2_5_98_1 e_1_2_5_139_1 e_1_2_5_79_1 e_1_2_5_116_1 e_1_2_5_18_1 e_1_2_5_90_1 e_1_2_5_71_1 e_1_2_5_94_1 e_1_2_5_75_1 e_1_2_5_52_1 e_1_2_5_25_1 e_1_2_5_48_1 e_1_2_5_103_1 e_1_2_5_141_1 e_1_2_5_21_1 e_1_2_5_44_1 e_1_2_5_122_1 e_1_2_5_107_1 Horikoshi K. (e_1_2_5_58_1) 1982 e_1_2_5_67_1 e_1_2_5_126_1 e_1_2_5_29_1 Ito M. (e_1_2_5_60_1) 2002 e_1_2_5_82_1 e_1_2_5_63_1 e_1_2_5_86_1 van der Laan J.C. (e_1_2_5_83_1) 1991; 57 e_1_2_5_17_1 e_1_2_5_36_1 e_1_2_5_59_1 e_1_2_5_130_1 e_1_2_5_9_1 Aono R. (e_1_2_5_4_1) 1990; 266 e_1_2_5_13_1 e_1_2_5_32_1 e_1_2_5_55_1 e_1_2_5_111_1 e_1_2_5_134_1 e_1_2_5_78_1 e_1_2_5_138_1 e_1_2_5_119_1 e_1_2_5_70_1 e_1_2_5_93_1 e_1_2_5_74_1 Krulwich T.A. (e_1_2_5_76_1) 1985; 260 e_1_2_5_97_1 e_1_2_5_51_1 e_1_2_5_121_1 e_1_2_5_28_1 e_1_2_5_47_1 e_1_2_5_140_1 e_1_2_5_102_1 e_1_2_5_125_1 e_1_2_5_24_1 e_1_2_5_106_1 e_1_2_5_129_1 e_1_2_5_66_1 e_1_2_5_89_1 e_1_2_5_81_1 e_1_2_5_62_1 e_1_2_5_85_1 e_1_2_5_20_1 e_1_2_5_39_1 e_1_2_5_110_1 e_1_2_5_16_1 e_1_2_5_35_1 e_1_2_5_114_1 e_1_2_5_6_1 e_1_2_5_12_1 e_1_2_5_54_1 e_1_2_5_133_1 Aono R. (e_1_2_5_5_1) 1999; 181 e_1_2_5_77_1 e_1_2_5_118_1 e_1_2_5_2_1 Horikoshi K. (e_1_2_5_56_1) 1998 e_1_2_5_137_1 e_1_2_5_92_1 e_1_2_5_73_1 e_1_2_5_96_1 e_1_2_5_31_1 e_1_2_5_50_1 |
| References_xml | – volume: 27 start-page: 221 year: 2010 end-page: 224 article-title: SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building publication-title: Mol Biol Evol – volume: 5 start-page: e8614 year: 2010 article-title: Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia publication-title: PLoS ONE – volume: 283 start-page: 29292 year: 2008 end-page: 29300 article-title: The role of external and matrix pH in mitochondrial reactive oxygen species generation publication-title: J Biol Chem – volume: 21 start-page: 537 year: 2005 end-page: 539 article-title: Circular genome visualization and exploration using CGView publication-title: Bioinformatics – volume: 63 start-page: 1134 year: 1999 end-page: 1137 article-title: Replication origin region of the chromosome of alkaliphilic C‐125 publication-title: Biosci Biotechnol Biochem – start-page: 291 year: 2005 end-page: 312 – volume: 401 start-page: 757 year: 2010 end-page: 775 article-title: surface‐layer proteins assemble by binding to the secondary cell wall polysaccharide in a manner that requires and publication-title: J Mol Biol – year: 1989 – volume: 119 start-page: 79 year: 1980 end-page: 86 article-title: Bioenergetic properties of alkaline‐tolerant and alkalophilic strains of publication-title: J Gen Microbiol – volume: 7 start-page: 449 year: 2000 end-page: 455 article-title: The SsrA‐SmpB system for protein tagging, directed degradation and ribosome rescue publication-title: Nat Struct Biol – volume: 2 start-page: 447 year: 1998 end-page: 453 article-title: Physical map of alkaliphilic OF4 and detection of a large endogenous plasmid publication-title: Extremophiles – volume: 1717 start-page: 67 year: 2005 end-page: 88 article-title: Alkaline pH homeostasis in bacteria: new insights publication-title: Biochim Biophys Acta – volume: 5 start-page: R37 year: 2004 article-title: Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data publication-title: Genome Biol – volume: 177 start-page: 441 year: 2002 end-page: 450 article-title: Sequence and phylogenetic analyses of the twin‐arginine targeting (Tat) protein export system publication-title: Arch Microbiol – volume: 175 start-page: 3628 year: 1993 end-page: 36235 article-title: High‐efficiency gene inactivation and replacement system for gram‐positive bacteria publication-title: J Bacteriol – volume: 167 start-page: 766 year: 1986 end-page: 773 article-title: Isolation and characterization of new facultatively alkalophilic strains of Bacillus species publication-title: J Bacteriol – volume: 15 start-page: 403 year: 1995 end-page: 410 article-title: Alkaliphiles: ‘basic’ molecular problems of pH tolerance and bioenergetics publication-title: Mol Microbiol – volume: 1797 start-page: 1362 year: 2010 end-page: 1377 article-title: F F ‐ATP synthases of alkaliphilic bacteria: lessons from their adaptations publication-title: Biochim Biophys Acta – volume: 9 start-page: 330 year: 2011a end-page: 343 article-title: Molecular aspects of bacterial pH sensing and homeostasis publication-title: Nat Rev Microbiol – volume: 25 start-page: 175 year: 1997 end-page: 187 article-title: Osmostress response in : characterization of a proline uptake system (OpuE) regulated by high osmolarity and the alternative transcription factor sigma B publication-title: Mol Microbiol – volume: 9 start-page: 75 year: 2008 article-title: The RAST Server: rapid annotations using subsystems technology publication-title: BMC Genomics – volume: 153 start-page: 3894 year: 2007 end-page: 3908 article-title: Exploring the evolution of the group repeat element by comparative genome analysis of closely related strains publication-title: Microbiology – volume: 182 start-page: 6557 year: 2000 end-page: 6564 article-title: Terminal oxidases of strain 168: one quinol oxidase, cytochrome or cytochrome is required for aerobic growth publication-title: J Bacteriol – start-page: 295 year: 2007 end-page: 310 – volume: 77 start-page: 643 year: 2008 end-page: 667 article-title: Protein translocation across the bacterial cytoplasmic membrane publication-title: Annu Rev Biochem – volume: 50 start-page: 5497 year: 2011 end-page: 5506 article-title: Mutations in a helix‐1 motif of the ATP synthase ‐subunit of OF4 cause functional deficits and changes in ‐ring stability and mobility on SDS–PAGE publication-title: Biochemistry – volume: 266 start-page: 933 year: 1990 end-page: 936 article-title: Loss of alkalophily in cell‐wall‐component‐defective mutants derived from alkalophilic C‐125. Isolation and partial characterization of the mutants publication-title: Biochem J – volume: 53 start-page: 1035 year: 2004a end-page: 1049 article-title: MotPS is the stator‐force generator for motility of alkaliphilic and its homologue is a second functional Mot in publication-title: Mol Microbiol – volume: 180 start-page: 2450 year: 1998 end-page: 2458 article-title: Gas vesicle genes identified in and functional expression in publication-title: J Bacteriol – volume: 1811 start-page: 177 year: 2011 end-page: 185 article-title: Identification and developmental formation of carotenoid pigments in the yellow/orange spore‐formers publication-title: Biochim Biophys Acta – volume: 85 start-page: 1307 year: 2003 end-page: 1316 article-title: Low dielectric permittivity of water at the membrane interface: effect on the energy coupling mechanism in biological membranes publication-title: Biophys J – volume: 268 start-page: 678 year: 1993 end-page: 685 article-title: Cloning of the operon from alkaliphilic OF4 and characterization of the pH‐regulated cytochrome oxidase it encodes publication-title: J Biol Chem – volume: 50 start-page: 1591 year: 2003 end-page: 1604 article-title: Cell wall stress responses in : the regulatory network of the bacitracin stimulon publication-title: Mol Microbiol – volume: 30 start-page: 179 year: 2002 end-page: 182 article-title: The tmRNA Website: invasion by an intron publication-title: Nucleic Acids Res – volume: 63 start-page: 742 year: 2006 end-page: 753 article-title: Effect of pH on the strcuture and stability of ssp. phosphoserine aminotransferase: thermodynamic and cystallographic studies publication-title: Proteins – volume: 11 start-page: 1641 year: 2001 end-page: 1650 article-title: Understanding the adaptation of species NRC‐1 to its extreme environment through computational analysis of its genome sequence publication-title: Genome Res – volume: 19 start-page: 4473 year: 2000 end-page: 4484 article-title: Bacterial SLH domain proteins are non‐covalently anchored to the cell surface via a conserved mechanism involving wall polysaccharide pyruvylation publication-title: EMBO J – volume: 68 start-page: 768 year: 2008 end-page: 785 article-title: Bacitracin sensing in publication-title: Mol Microbiol – volume: 41 start-page: 59 year: 2001 end-page: 71 article-title: Alkaline shock induces the σ regulon publication-title: Mol Microbiol – volume: 26 start-page: 1608 year: 2010 end-page: 1615 article-title: PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes publication-title: Bioinformatics – volume: 101 start-page: 10566 year: 2004b end-page: 10571 article-title: The voltage‐gated Na channel Na BP has a role in motility, chemotaxis, and pH homeostasis of an alkaliphilic publication-title: Proc Natl Acad Sci USA – volume: 93 start-page: 342 year: 2002 end-page: 353 article-title: Bioenergetics of alkaliphilic spp publication-title: J Biosci Bioeng – volume: 137 start-page: 2375 year: 1991 end-page: 2379 article-title: Molar growth yields and bioenergetic parameters of extremely alkaliphilic species in batch cultures, and growth in a chemostat at pH 10.5 publication-title: J Gen Microbiol – volume: 284 start-page: 8714 year: 2009 end-page: 8725 article-title: Characterization of the functionally critical AXAXAXA and PXXEXXP motifs of the ATP synthase ‐subunit from an alkaliphilic publication-title: J Biol Chem – start-page: 133 year: 2002 end-page: 140 – volume: 43 start-page: 435 year: 1989 end-page: 463 article-title: Alkalophilic bacteria publication-title: Annu Rev Microbiol – volume: 13 start-page: 205 year: 2009 end-page: 215 article-title: Recent advances in siderophore biosynthesis publication-title: Curr Opin Chem Biol – volume: 18 start-page: 129 year: 2010 end-page: 140 article-title: In vitro phosphorylation of key metabolic enzymes from PrkC phosphorylates enzyme from different branches of basic metabolism publication-title: J Mol Microbiol Biotechnol – volume: 11 start-page: 703 year: 2001 end-page: 709 article-title: Whole proteome pI values correlate with subcellular localizations of proteins for organisms within the three domains of life publication-title: Genome Res – volume: 260 start-page: 4055 year: 1985 end-page: 4058 article-title: Presence of a nonmetabolizable solute that is translocated with Na enhances Na ‐dependent pH homeostasis in an alkalophilic publication-title: J Biol Chem – volume: 60 start-page: 1091 year: 2006 end-page: 1098 article-title: Poly‐gamma‐glutamate in bacteria publication-title: Mol Microbiol – volume: 55 start-page: 78 year: 2005 end-page: 89 article-title: The morphogenetic MreBCD proteins of form an essential membrane‐bound complex publication-title: Mol Microbiol – volume: 48 start-page: 2888 year: 2004 end-page: 2896 article-title: Antibiotic‐inducible promoter regulated by the cell envelope stress‐sensing two‐component system LiaRS of publication-title: Antimicrob Agents Chemother – volume: 8 start-page: e1000443 year: 2010 article-title: A new type of proton coordination in an F F ‐ATP synthase rotor ring publication-title: PLoS Biol – volume: 41 start-page: 1159 year: 2001 end-page: 1172 article-title: A novel two‐component regulatory system in for the survival of severe secretion stress publication-title: Mol Microbiol – start-page: 311 year: 2007 end-page: 329 – volume: 25 start-page: 3389 year: 1997 end-page: 3402 article-title: Gapped BLAST and PSI‐BLAST: a new generation of protein database search programs publication-title: Nucleic Acids Res – volume: 274 start-page: 26179 year: 1999 end-page: 26184 article-title: contains two small type cytochromes with homologous heme domains but different types of membrane anchors publication-title: J Biol Chem – volume: 63 start-page: 735 year: 1999 end-page: 750 article-title: Alkaliphiles: some applications of their products for biotechnology publication-title: Microbiol Mol Biol Rev – volume: 294 start-page: 2372 year: 2001 end-page: 2375 article-title: A prokaryotic voltage‐gated sodium channel publication-title: Science – volume: 100 start-page: 10213 year: 2003 end-page: 10218 article-title: A tenth gene and the conserved gene of a operon have a role in Mg uptake publication-title: Proc Natl Acad Sci USA – volume: 1757 start-page: 913 year: 2006 end-page: 930 article-title: Protons @ interfaces: implications for biological energy conservation publication-title: Biochim Biophys Acta – volume: 14 start-page: 939 year: 1994 end-page: 946 article-title: Characterization of a gene responsible for the Na /H antiporter system of alkalophilic species strain C‐125 publication-title: Mol Microbiol – volume: 36 start-page: 4529 year: 2008 end-page: 4548 article-title: Survey of group I and group II introns in 29 sequenced genomes of the group: insights into their spread and evolution publication-title: Nucleic Acids Res – volume: 145 start-page: 3431 year: 1999 end-page: 3445 article-title: TRAP transporters: an ancient family of extracytoplasmic solute‐receptor‐dependent secondary active transporters publication-title: Microbiology – volume: 185 start-page: 5133 year: 2003 end-page: 5147 article-title: Mutational loss of a K and NH transporter affects the growth and endospore formation of alkaliphilic OF4 publication-title: J Bacteriol – start-page: 155 year: 1998 end-page: 179 – volume: 256 start-page: 1 year: 2006 end-page: 15 article-title: Protein cell surface display in Gram‐positive bacteria: from single protein to macromolecular protein structure publication-title: FEMS Microbiol Lett – volume: 189 start-page: 98 year: 2007 end-page: 108 article-title: Role of FtsEX in cell division of : viability of the mutants is dependent on functional SufI or high osmotic strength publication-title: J Bacteriol – start-page: 120 year: 2011b end-page: 139 – volume: 1389 start-page: 34 year: 1998 end-page: 42 article-title: Cloning of the OF4 gene and characterization of its gene product publication-title: Biochim Biophys Acta – volume: 31 start-page: 845 year: 2010 end-page: 856 article-title: Industrial application of alkaliphiles and their enzymes – past, present and future publication-title: Environ Technol – volume: 37 start-page: 3202 year: 2009 end-page: 3214 article-title: A conserved 3′ extension in unusual group II introns is important for efficient second‐step splicing publication-title: Nucleic Acids Res – volume: 31 start-page: 424 year: 2003 end-page: 426 article-title: Database for mobile group II introns publication-title: Nucleic Acids Res – volume: 191 start-page: 144 year: 1961 end-page: 148 article-title: Coupling of phosphorylation to electron and hydrogen transfer by a chemiosmotic type of mechanism publication-title: Nature – volume: 101 start-page: 579 year: 2006 end-page: 593 article-title: The group: novel aspects of population structure and genome dynamics publication-title: J Appl Microbiol – volume: 228 start-page: 123 year: 1999 end-page: 132 article-title: DnaA proteins of and : coordinate actions with single‐stranded DNA‐binding protein and interspecies inhibition during open complex formation at the replication origins publication-title: Gene – volume: 23 start-page: 119 year: 2007 end-page: 125 article-title: Mitochondrial introns: a critical view publication-title: Trends Genet – volume: 189 start-page: 1698 year: 2007 end-page: 1710 article-title: Biosynthetic analysis of the petrobactin siderophore pathway from publication-title: J Bacteriol – volume: 528 start-page: 35 year: 2002 end-page: 39 article-title: Cardiolipin: a proton trap for oxidative phosphorylation publication-title: FEBS Lett – volume: 185 start-page: 1289 year: 2003 end-page: 1298 article-title: KtrAB and KtrCD: two K uptake systems in and their role in adaptation to hypertonicity publication-title: J Bacteriol – volume: 65 start-page: 215 year: 2011 end-page: 238 article-title: Bacterial osmoregulation: a paradigm for the study of cellular homeostasis publication-title: Annu Rev Microbiol – volume: 38 start-page: 769 year: 2011 end-page: 790 article-title: Alkaliphilic bacteria: applications in industrial technology publication-title: J Ind Microbiol Biotechnol – volume: 168 start-page: 334 year: 1986 end-page: 340 article-title: Membrane lipid composition of obligately and facultatively alkalophilic strains of spp publication-title: J Bacteriol – volume: 32 start-page: 1792 year: 2004 end-page: 1797 article-title: MUSCLE: multiple sequence alignment with high accuracy and high throughput publication-title: Nucleic Acids Res – volume: 176 start-page: 3111 year: 1994 end-page: 3116 article-title: Growth and bioenergetics of alkaliphilic OF4 in continuous culture at high pH publication-title: J Bacteriol – volume: 74 start-page: 257 year: 2009 end-page: 260 article-title: Cation/proton antiporter complements of bacteria: why so large and diverse? publication-title: Mol Microbiol – volume: 190 start-page: 363 year: 2008 end-page: 376 article-title: Determinants for the subcellular localization and function of a nonessential SEDS protein publication-title: J Bacteriol – volume: 78 start-page: 1577 year: 2010 end-page: 1590 article-title: The critical role of S‐lactoylglutathione formation during methylglyoxal detoxification in publication-title: Mol Microbiol – volume: 27 start-page: 204 year: 2010 end-page: 211 article-title: Structural and functional evolution of group II intron ribozymes: insights from unusual elements carrying a 3′ extension publication-title: N Biotechnol – volume: 182 start-page: 5969 year: 2000 end-page: 5981 article-title: Two‐dimensional gel electrophoresis analyses of pH‐dependent protein expression in facultatively alkaliphilic OF4 lead to characterization of an S‐layer protein with a role in alkaliphily publication-title: J Bacteriol – year: 1982 – volume: 55 start-page: 1 year: 2009 end-page: 79 article-title: Cytoplasmic pH measurement and homeostasis in bacteria and archaea publication-title: Adv Microb Physiol – volume: 9 start-page: 14 year: 2003 end-page: 19 article-title: ORF‐less and reverse‐transcriptase‐encoding group II introns in archaebacteria, with a pattern of homing into related group II intron ORFs publication-title: RNA – volume: 181 start-page: 6600 year: 1999 end-page: 6606 article-title: Contribution of the cell wall component teichuronopeptide to pH homeostasis and alkaliphily in the alkaliphile C‐125 publication-title: J Bacteriol – volume: 144 start-page: 87 year: 1974 end-page: 90 article-title: Proton/sodium ion antiport in publication-title: Biochem J – volume: 6 start-page: 309 year: 1992 end-page: 315 article-title: Cloning of an autonomously replicating sequence ( ) from the chromosome publication-title: Mol Microbiol – volume: 70 start-page: 1307 year: 2008 end-page: 1322 article-title: A matter of life and death: cell wall homeostasis and the WalKR (YycG) essential signal transduction pathway publication-title: Mol Microbiol – volume: 4 start-page: 209 year: 2000 end-page: 214 article-title: Characterization and comparative study of the operons of alkaliphilic C‐125 publication-title: Extremophiles – volume: 76 start-page: 6955 year: 2010 end-page: 6961 article-title: Acquisition of iron by alkaliphilic bacillus species publication-title: Appl Environ Microbiol – volume: 32 start-page: 927 year: 2008 end-page: 955 article-title: Microbial biodegradation of polyaromatic hydrocarbons publication-title: FEMS Microbiol Rev – volume: 31 start-page: 446 year: 2003 end-page: 447 article-title: tmRDB (tmRNA database) publication-title: Nucleic Acids Res – volume: 45 start-page: 1267 year: 2002b end-page: 1276 article-title: Antibiotics that inhibit cell wall biosynthesis induce expression of the σ and σ regulons publication-title: Mol Microbiol – volume: 37 start-page: D136 year: 2009 end-page: D140 article-title: Rfam: updates to the RNA families database publication-title: Nucleic Acids Res – volume: 28 start-page: 235 year: 1998 end-page: 247 article-title: Control of cell shape and elongation by the gene in publication-title: Mol Microbiol – volume: 28 start-page: 963 year: 2011 end-page: 983 article-title: Interspersed DNA repeats ‐ of group bacteria form three distinct groups with different evolutionary and functional patterns publication-title: Mol Biol Evol – volume: 279 start-page: 54952 year: 2004 end-page: 54962 article-title: Na ‐dependent K uptake Ktr system from the cyanobacterium sp. PCC 6803 and its role in the early phases of cell adaptation to hyperosmotic shock publication-title: J Biol Chem – volume: 279 start-page: 26546 year: 2004 end-page: 26554 article-title: Replacement of amino acid sequence features of ‐ and ‐subunits of ATP synthases of alkaliphilic with the consensus sequence results in defective oxidative phosphorylation and non‐fermentative growth at pH 10.5 publication-title: J Biol Chem – volume: 30 start-page: 3936 year: 1991 end-page: 3942 article-title: Properties of the two terminal oxidases of publication-title: Biochemistry – volume: 325 start-page: 1380 year: 2009 end-page: 1384 article-title: Endogenous nitric oxide protects bacteria against a wide spectrum of antibiotics publication-title: Science – volume: 55 start-page: 2643 year: 1991 end-page: 2645 article-title: Carotenes produced by alkaliphilic yellow‐pigmented strains of publication-title: Agric Biol Chem – volume: 25 start-page: 3 year: 1997 end-page: 10 article-title: Enzymic and genetic basis for bacterial growth on malonate publication-title: Mol Microbiol – volume: 1788 start-page: 1997 year: 2009 end-page: 2002 article-title: A new look at cardiolipin publication-title: Biochim Biophys Acta – volume: 286 start-page: 2245 year: 2011 end-page: 2260 article-title: Identification and characterization of a novel‐type ferric siderophore reductase from a Gram‐positive extremophile publication-title: J Biol Chem – volume: 193 start-page: 4199 year: 2011 end-page: 4213 article-title: Genome sequences of the biotechnologically important strains QM B1551 and DSM319 publication-title: J Bacteriol – year: 2003 – volume: 171 start-page: 1744 year: 1989 end-page: 1746 article-title: Mutation of OF4 to duramycin resistance results in substantial replacement of membrane lipid phosphatidylethanolamine by its plasmalogen form publication-title: J Bacteriol – volume: 316 start-page: 443 year: 2002a end-page: 457 article-title: Defining the σ regulon: a comparative analysis of promoter consensus search, run‐off transcription/macroarray analysis (ROMA), and transcriptional profiling approaches publication-title: J Mol Biol – volume: 103 start-page: 19766 year: 2006 end-page: 19770 article-title: Localized proton microcircuits at the biological membrane‐water interface publication-title: Proc Natl Acad Sci USA – volume: 179 start-page: 3851 year: 1997 end-page: 3857 article-title: Role of the ‐encoded Na /H antiporter of alkaliphilic OF4 publication-title: J Bacteriol – volume: 179 start-page: 863 year: 1997 end-page: 870 article-title: Construction and characterization of a mutant of alkaliphilic OF4 with a disrupted operon and purification of a novel cytochrome publication-title: J Bacteriol – volume: 28 start-page: 4317 year: 2000 end-page: 4331 article-title: Complete genome sequence of the alkaliphilic bacterium and genomic sequence comparison with publication-title: Nucleic Acids Res – volume: 14 start-page: 97 year: 2005 end-page: 110 article-title: Enzyme adaptation to alkaline pH: atomic resolution (1.08 A) structure of phosphoserine aminotransferase from publication-title: Protein Sci – volume: 207 start-page: 978 year: 1995 end-page: 984 article-title: Isolation and the gene cloning of an alkaline shock protein in methicillin resistant publication-title: Biochem Biophys Res Commun – volume: 4 start-page: 147 year: 1998 end-page: 181 article-title: Peptide siderophores publication-title: J Pept Sci – volume: 10 start-page: 209 year: 2002 end-page: 212 article-title: The ESAT‐6/WXG100 superfamily – and a new Gram‐positive secretion system? publication-title: Trends Microbiol – volume: 4 start-page: 253 year: 2000 end-page: 258 article-title: The Na /H antiporter of alkaliphilic sp publication-title: Extremophiles – volume: 63 start-page: 575 year: 2009 end-page: 597 article-title: Management of oxidative stress in publication-title: Annu Rev Microbiol – volume: 4 start-page: 1137 year: 2009 end-page: 1149 article-title: Motility and chemotaxis in alkaliphilic species publication-title: Future Microbiol – volume: 282 start-page: 31147 year: 2007 end-page: 31155 article-title: Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase publication-title: J Biol Chem – volume: 46 start-page: 47 year: 2002 end-page: 110 article-title: The extracytoplasmic function (ECF) sigma factors publication-title: Adv Microb Physiol – volume: 280 start-page: 32493 year: 2005 end-page: 32498 article-title: Structure and biosynthesis of staphyloxanthin from publication-title: J Biol Chem – volume: 185 start-page: 2379 year: 2003 end-page: 2382 article-title: Characterization of the gene, whose product is involved in γ−polyglutamic acid degradation publication-title: J Bacteriol – volume: 9 start-page: 345 year: 2005 end-page: 354 article-title: The Mrp system: a giant among monovalent cation/proton antiporters? publication-title: Extremophiles – volume: 25 start-page: 1335 year: 2009 end-page: 1337 article-title: Infernal 1.0: inference of RNA alignments publication-title: Bioinformatics – volume: 370 start-page: 379 year: 1994 end-page: 382 article-title: Proton migration along the membrane surface and retarded surface to bulk transfer publication-title: Nature – volume: 81 start-page: 69 year: 2011 end-page: 79 article-title: A σ ‐dependent stress response in that reduces membrane fluidity publication-title: Mol Microbiol – volume: 285 start-page: 32105 year: 2010 end-page: 32115 article-title: The ATP synthase a‐subunit of extreme alkaliphiles is a distinct variant publication-title: J Biol Chem – volume: 57 start-page: 901 year: 1991 end-page: 909 article-title: Cloning, characterization, and multiple chromosomal integration of a alkaline protease gene publication-title: Appl Environ Microbiol – volume: 283 start-page: 2534 year: 2008 end-page: 2542 article-title: A minimal Tat system from a gram‐positive organism: a bifunctional TatA subunit participates in descrete TatAC and TatA complexes publication-title: J Biol Chem – volume: 178 start-page: 5071 year: 1996 end-page: 5079 article-title: Three transport systems for the osmoprotectant glycine betaine operate in : characterization of OpuD publication-title: J Bacteriol – ident: e_1_2_5_97_1 doi: 10.1016/j.bbabio.2006.02.015 – ident: e_1_2_5_114_1 doi: 10.1111/j.1365-2958.2008.06194.x – ident: e_1_2_5_87_1 doi: 10.1074/jbc.M808738200 – ident: e_1_2_5_132_1 doi: 10.1042/bj1440087 – ident: e_1_2_5_65_1 doi: 10.1128/jb.178.17.5071-5079.1996 – ident: e_1_2_5_39_1 doi: 10.1093/molbev/msp259 – ident: e_1_2_5_59_1 doi: 10.1046/j.1365-2958.2001.02576.x – ident: e_1_2_5_38_1 doi: 10.1128/JB.182.21.5969-5981.2000 – ident: e_1_2_5_54_1 doi: 10.1016/j.bbabio.2010.02.028 – ident: e_1_2_5_72_1 doi: 10.1016/S0378-1119(99)00009-8 – ident: e_1_2_5_105_1 doi: 10.1016/j.bbalip.2010.12.009 – ident: e_1_2_5_117_1 doi: 10.1101/gr.GR-1587R – ident: e_1_2_5_100_1 doi: 10.1111/j.1365-2958.2010.07426.x – ident: e_1_2_5_137_1 doi: 10.1007/s00203-002-0408-4 – ident: e_1_2_5_129_1 doi: 10.1016/j.nbt.2010.02.014 – ident: e_1_2_5_29_1 doi: 10.1110/ps.041029805 – ident: e_1_2_5_95_1 doi: 10.1038/191144a0 – ident: e_1_2_5_119_1 doi: 10.1016/S0065-2911(09)05501-5 – ident: e_1_2_5_86_1 doi: 10.1128/JB.180.9.2450-2458.1998 – ident: e_1_2_5_110_1 doi: 10.1099/00221287-145-12-3431 – ident: e_1_2_5_136_1 doi: 10.1146/annurev-micro-090110-102815 – ident: e_1_2_5_37_1 doi: 10.1128/jb.179.3.863-870.1997 – ident: e_1_2_5_55_1 doi: 10.1128/JB.185.4.1289-1298.2003 – ident: e_1_2_5_50_1 doi: 10.1038/370379a0 – ident: e_1_2_5_57_1 doi: 10.1128/MMBR.63.4.735-750.1999 – ident: e_1_2_5_116_1 doi: 10.1007/s10295-011-0968-x – volume-title: Molecular Cloning: A Laboratory Manual year: 1989 ident: e_1_2_5_115_1 contributor: fullname: Sambrook J. – ident: e_1_2_5_121_1 doi: 10.1093/bioinformatics/bti054 – ident: e_1_2_5_32_1 doi: 10.1128/JB.00449-11 – volume: 181 start-page: 6600 year: 1999 ident: e_1_2_5_5_1 article-title: Contribution of the cell wall component teichuronopeptide to pH homeostasis and alkaliphily in the alkaliphile Bacillus lentus C‐125 publication-title: J Bacteriol doi: 10.1128/JB.181.21.6600-6606.1999 contributor: fullname: Aono R. – ident: e_1_2_5_20_1 doi: 10.1016/S0006-3495(03)74565-2 – ident: e_1_2_5_48_1 doi: 10.1016/S0014-5793(02)03292-1 – ident: e_1_2_5_31_1 doi: 10.1111/j.1574-6941.2006.00060.x – ident: e_1_2_5_118_1 doi: 10.1074/jbc.M801019200 – ident: e_1_2_5_113_1 doi: 10.1126/science.1065635 – ident: e_1_2_5_107_1 doi: 10.1371/journal.pbio.1000443 – ident: e_1_2_5_93_1 doi: 10.1093/emboj/19.17.4473 – ident: e_1_2_5_23_1 doi: 10.1261/rna.2126203 – ident: e_1_2_5_24_1 doi: 10.1093/nar/gkg049 – ident: e_1_2_5_128_1 doi: 10.1111/j.1365-2672.2006.03087.x – volume-title: Extremophiles (Life under Extreme External Conditions) year: 2003 ident: e_1_2_5_40_1 contributor: fullname: Grant W.D. – ident: e_1_2_5_2_1 doi: 10.1093/nar/25.17.3389 – volume: 260 start-page: 4055 year: 1985 ident: e_1_2_5_76_1 article-title: Presence of a nonmetabolizable solute that is translocated with Na+ enhances Na+‐dependent pH homeostasis in an alkalophilic Bacillus publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)89230-4 contributor: fullname: Krulwich T.A. – ident: e_1_2_5_125_1 doi: 10.1271/bbb.63.1134 – ident: e_1_2_5_19_1 doi: 10.1046/j.1365-2958.2002.03050.x – ident: e_1_2_5_85_1 doi: 10.1128/JB.01526-06 – volume: 268 start-page: 678 year: 1993 ident: e_1_2_5_109_1 article-title: Cloning of the cta operon from alkaliphilic Bacillus firmus OF4 and characterization of the pH‐regulated cytochrome caa3 oxidase it encodes publication-title: J Biol Chem doi: 10.1016/S0021-9258(18)54205-8 contributor: fullname: Quirk P.G. – ident: e_1_2_5_16_1 doi: 10.1074/jbc.M704023200 – ident: e_1_2_5_42_1 doi: 10.1099/00221287-137-10-2375 – ident: e_1_2_5_27_1 doi: 10.1002/(SICI)1099-1387(199805)4:3<147::AID-PSC136>3.0.CO;2-C – ident: e_1_2_5_111_1 doi: 10.1128/JB.01482-07 – ident: e_1_2_5_10_1 doi: 10.1074/jbc.274.37.26179 – ident: e_1_2_5_77_1 doi: 10.1128/9781555815813.ch24 – ident: e_1_2_5_52_1 doi: 10.1046/j.1365-2958.1998.00766.x – ident: e_1_2_5_81_1 doi: 10.1111/j.1365-2958.2004.04367.x – ident: e_1_2_5_21_1 doi: 10.1128/jb.168.1.334-340.1986 – volume: 57 start-page: 901 year: 1991 ident: e_1_2_5_83_1 article-title: Cloning, characterization, and multiple chromosomal integration of a Bacillus alkaline protease gene publication-title: Appl Environ Microbiol doi: 10.1128/aem.57.4.901-909.1991 contributor: fullname: van der Laan J.C. – ident: e_1_2_5_94_1 doi: 10.1074/jbc.M110.192468 – ident: e_1_2_5_122_1 doi: 10.1128/jb.176.11.3111-3116.1994 – ident: e_1_2_5_135_1 doi: 10.1128/JB.182.23.6557-6564.2000 – start-page: 120 volume-title: Extremophiles Handbook year: 2011 ident: e_1_2_5_80_1 contributor: fullname: Krulwich T.A. – ident: e_1_2_5_13_1 doi: 10.1046/j.1365-2958.1997.4441809.x – ident: e_1_2_5_106_1 doi: 10.1159/000308512 – ident: e_1_2_5_25_1 doi: 10.1111/j.1574-6968.2006.00122.x – ident: e_1_2_5_112_1 doi: 10.1128/JB.01347-06 – ident: e_1_2_5_30_1 doi: 10.1111/j.1365-2958.2008.06483.x – ident: e_1_2_5_66_1 doi: 10.1038/75843 – ident: e_1_2_5_120_1 doi: 10.1093/nar/gkp186 – ident: e_1_2_5_101_1 doi: 10.1016/j.bbamem.2005.09.010 – ident: e_1_2_5_63_1 doi: 10.1073/pnas.0402692101 – volume: 266 start-page: 933 year: 1990 ident: e_1_2_5_4_1 article-title: Loss of alkalophily in cell‐wall‐component‐defective mutants derived from alkalophilic Bacillus C‐125. Isolation and partial characterization of the mutants publication-title: Biochem J contributor: fullname: Aono R. – ident: e_1_2_5_28_1 doi: 10.1146/annurev.biochem.77.061606.160747 – volume-title: Alkalophilic Microorganisms year: 1982 ident: e_1_2_5_58_1 contributor: fullname: Horikoshi K. – ident: e_1_2_5_79_1 doi: 10.1038/nrmicro2549 – ident: e_1_2_5_89_1 doi: 10.1128/AEM.01393-10 – ident: e_1_2_5_35_1 doi: 10.1074/jbc.M110.165084 – ident: e_1_2_5_75_1 doi: 10.1146/annurev.mi.43.100189.002251 – ident: e_1_2_5_88_1 doi: 10.1021/bi2005009 – ident: e_1_2_5_140_1 doi: 10.1128/9781555815813.ch23 – volume: 119 start-page: 79 year: 1980 ident: e_1_2_5_43_1 article-title: Bioenergetic properties of alkaline‐tolerant and alkalophilic strains of Bacillus firmus publication-title: J Gen Microbiol contributor: fullname: Guffanti A.A. – ident: e_1_2_5_51_1 doi: 10.1016/S0065-2911(02)46002-X – ident: e_1_2_5_17_1 doi: 10.1111/j.1365-2958.2006.05179.x – ident: e_1_2_5_34_1 doi: 10.2217/fmb.09.76 – ident: e_1_2_5_142_1 doi: 10.1093/nar/gkg019 – ident: e_1_2_5_138_1 doi: 10.1093/bioinformatics/btq249 – ident: e_1_2_5_15_1 doi: 10.1073/pnas.0605909103 – ident: e_1_2_5_22_1 doi: 10.1128/jb.171.3.1744-1746.1989 – ident: e_1_2_5_9_1 doi: 10.1016/j.cbpa.2009.03.008 – ident: e_1_2_5_84_1 doi: 10.1016/j.tig.2007.01.006 – ident: e_1_2_5_124_1 doi: 10.1007/s00792-005-0451-6 – ident: e_1_2_5_12_1 doi: 10.1128/jb.175.11.3628-3635.1993 – ident: e_1_2_5_98_1 doi: 10.1007/PL00010713 – ident: e_1_2_5_7_1 doi: 10.1186/gb-2004-5-5-r37 – ident: e_1_2_5_91_1 doi: 10.1128/AAC.48.8.2888-2896.2004 – ident: e_1_2_5_14_1 doi: 10.1128/9781555816452.ch14 – start-page: 133 volume-title: Encyclopedia of Environmental Microbiology year: 2002 ident: e_1_2_5_60_1 contributor: fullname: Ito M. – ident: e_1_2_5_73_1 doi: 10.1093/molbev/msq269 – ident: e_1_2_5_62_1 doi: 10.1111/j.1365-2958.2004.04173.x – ident: e_1_2_5_92_1 doi: 10.1074/jbc.M407268200 – ident: e_1_2_5_53_1 doi: 10.1073/pnas.1832982100 – ident: e_1_2_5_139_1 doi: 10.1016/S1389-1723(02)80066-4 – ident: e_1_2_5_130_1 doi: 10.1074/jbc.M401206200 – ident: e_1_2_5_41_1 doi: 10.1007/s007920050091 – ident: e_1_2_5_96_1 doi: 10.1111/j.1365-2958.1992.tb01473.x – ident: e_1_2_5_108_1 doi: 10.1021/bi00230a019 – ident: e_1_2_5_68_1 doi: 10.1016/j.jmb.2010.06.059 – ident: e_1_2_5_36_1 doi: 10.1093/nar/gkn766 – ident: e_1_2_5_44_1 doi: 10.1128/JB.167.3.766-773.1986 – ident: e_1_2_5_99_1 doi: 10.1093/bioinformatics/btp157 – ident: e_1_2_5_104_1 doi: 10.1111/j.1574-6976.2008.00127.x – ident: e_1_2_5_46_1 doi: 10.1126/science.1175439 – ident: e_1_2_5_123_1 doi: 10.1128/JB.185.7.2379-2382.2003 – ident: e_1_2_5_103_1 doi: 10.1074/jbc.M505070200 – ident: e_1_2_5_49_1 doi: 10.1111/j.1365-2958.1994.tb01329.x – ident: e_1_2_5_8_1 doi: 10.1074/jbc.M708134200 – ident: e_1_2_5_82_1 doi: 10.1006/bbrc.1995.1281 – ident: e_1_2_5_90_1 doi: 10.1046/j.1365-2958.2003.03786.x – start-page: 155 volume-title: Extremophiles: Microbial Life in Extreme Environments year: 1998 ident: e_1_2_5_56_1 contributor: fullname: Horikoshi K. – ident: e_1_2_5_102_1 doi: 10.1016/S0966-842X(02)02345-4 – ident: e_1_2_5_71_1 doi: 10.1099/mic.0.2007/005504-0 – ident: e_1_2_5_127_1 doi: 10.1093/nar/gkn372 – ident: e_1_2_5_6_1 doi: 10.1186/1471-2164-9-75 – ident: e_1_2_5_47_1 doi: 10.1016/j.bbamem.2009.09.008 – ident: e_1_2_5_74_1 doi: 10.1111/j.1365-2958.1995.tb02253.x – ident: e_1_2_5_11_1 doi: 10.1371/journal.pone.0008614 – ident: e_1_2_5_78_1 doi: 10.1111/j.1365-2958.2009.06842.x – ident: e_1_2_5_133_1 doi: 10.1046/j.1365-2958.2001.02489.x – ident: e_1_2_5_26_1 doi: 10.1046/j.1365-2958.1997.4611824.x – ident: e_1_2_5_69_1 doi: 10.1111/j.1365-2958.2011.07679.x – ident: e_1_2_5_70_1 doi: 10.1007/s007920070010 – ident: e_1_2_5_45_1 doi: 10.1016/S0005-2760(97)00086-6 – ident: e_1_2_5_33_1 doi: 10.1080/09593331003762807 – ident: e_1_2_5_3_1 doi: 10.1271/bbb1961.55.2643 – ident: e_1_2_5_61_1 doi: 10.1128/jb.179.12.3851-3857.1997 – ident: e_1_2_5_141_1 doi: 10.1146/annurev.micro.091208.073241 – ident: e_1_2_5_134_1 doi: 10.1093/nar/30.1.179 – ident: e_1_2_5_126_1 doi: 10.1093/nar/28.21.4317 – ident: e_1_2_5_67_1 doi: 10.1101/gr.190201 – ident: e_1_2_5_131_1 doi: 10.1128/JB.185.17.5133-5147.2003 – ident: e_1_2_5_64_1 doi: 10.1002/prot.20935 – ident: e_1_2_5_18_1 doi: 10.1006/jmbi.2001.5372 |
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| Snippet | Summary
Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can... Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non-fermentatively in a pH range from 7.5 to above 11.4 and can withstand large... Summary Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non‐fermentatively in a pH range from 7.5 to above 11.4 and can... Bacillus pseudofirmus OF4 is an extreme but facultative alkaliphile that grows non-fermentatively in a pH range from 7.5 to above 11.4 and can withstand large... |
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| SubjectTerms | Adaptation, Physiological - genetics Bacillus Bacillus - genetics Bacillus - physiology Bacterial Proteins - chemistry Cell Wall - physiology Cytoplasm - chemistry DNA Transposable Elements DNA, Bacterial - genetics Energy Metabolism Genome, Bacterial Hydrogen-Ion Concentration Introns Molecular Sequence Annotation Oxidative Stress Phosphorylation Plasmids - genetics Replication Origin Sodium - chemistry |
| Title | Genome of alkaliphilic Bacillus pseudofirmus OF4 reveals adaptations that support the ability to grow in an external pH range from 7.5 to 11.4 |
| URI | https://api.istex.fr/ark:/67375/WNG-6SZPQDZJ-J/fulltext.pdf https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fj.1462-2920.2011.02591.x https://www.ncbi.nlm.nih.gov/pubmed/21951522 https://search.proquest.com/docview/1028078988 https://search.proquest.com/docview/915382097 https://pubmed.ncbi.nlm.nih.gov/PMC3228905 |
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