phyloBARCODER: A Web Tool for Phylogenetic Classification of Eukaryote Metabarcodes Using Custom Reference Databases

• Published in: Molecular Biology and Evolution Vol. 41; no. 8
• Main Authors: Inoue, Jun, Shinzato, Chuya, Hirai, Junya, Itoh, Sachihiko, Minegishi, Yuki, Ito, Shin-ichi, Hyodo, Susumu
• Format: Journal Article
• Language: English
• Published: UK Oxford University Press (OUP) 02.08.2024; Oxford University Press
• Subjects: Animal behavior; Classification; Databases, Genetic; Databases, Nucleic Acid; Deoxyribonucleic acid; DNA; DNA barcoding; DNA Barcoding, Taxonomic - methods; DNA sequencing; Eukaryota - classification; Eukaryota - genetics; Gene sequencing; Genes; Internet; Nucleotide sequence; Nucleotide sequencing; Phylogenetics; Phylogeny; Privacy; Resources; Software; Species; Web site management software; species tree; metabarcoding; phylogenetic analysis; phyloBARCODER; species identification; gene tree; assignment; placement; classification

Abstract We developed phyloBARCODER (https://github.com/jun-inoue/phyloBARCODER), a new web tool that can identify short DNA sequences to the species level using metabarcoding. phyloBARCODER estimates phylogenetic trees based on the uploaded anonymous DNA sequences and reference sequences from datab...