Association of potential salivary biomarkers with diabetic retinopathy and its severity in type-2 diabetes mellitus: a proteomic analysis by mass spectrometry

• Published in: PeerJ (San Francisco, CA) Vol. 4; p. e2022
• Main Authors: Chee, Chin Soon, Chang, Khai Meng, Loke, Mun Fai, Angela Loo, Voon Pei, Subrayan, Visvaraja
• Format: Journal Article
• Language: English
• Published: United States PeerJ. Ltd 12.05.2016; PeerJ Inc
• Subjects: Biochemistry; Biological markers; Development and progression; Diabetes and Endocrinology; Diabetic retinopathy; Diabetics; iTRAQ; LC-MS; Mass spectrometry; Ophthalmology; Proteins; Salivary proteome; Type 2 diabetes; iTRAQ; Diabetic retinopathy; LC-MS; Salivary proteome
• ISSN: 2167-8359; 2167-8359
• DOI: 10.7717/peerj.2022

The aim of our study was to characterize the human salivary proteome and determine the changes in protein expression in two different stages of diabetic retinopathy with type-2 diabetes mellitus: (1) with non-proliferative diabetic retinopathy (NPDR) and (2) with proliferative diabetic retinopathy (PDR). Type-2 diabetes mellitus without diabetic retinopathy (XDR) was designated as control. In this study, 45 saliva samples were collected (15 samples from XDR control group, 15 samples from NPDR disease group and 15 samples from PDR disease group). Salivary proteins were extracted, reduced, alkylated, trypsin digested and labeled with an isobaric tag for relative and absolute quantitation (iTRAQ) before being analyzed by an Orbitrap fusion tribrid mass spectrometer. Protein annotation, fold change calculation and statistical analysis were interrogated by Proteome Discoverer. Biological pathway analysis was performed by Ingenuity Pathway Analysis. Data are available via ProteomeXchange with identifiers PXD003723-PX003725. A total of 315 proteins were identified from the salivary proteome and 119 proteins were found to be differentially expressed. The differentially expressed proteins from the NPDR disease group and the PDR disease group were assigned to respective canonical pathways indicating increased Liver X receptor/Retinoid X receptor (LXR/RXR) activation, Farnesoid X receptor/Retinoid X receptor (FXR/RXR) activation, acute phase response signaling, sucrose degradation V and regulation of actin-based motility by Rho in the PDR disease group compared to the NPDR disease group. Progression from non-proliferative to proliferative retinopathy in type-2 diabetic patients is a complex multi-mechanism and systemic process. Furthermore, saliva was shown to be a feasible alternative sample source for diabetic retinopathy biomarkers.