The Utilization of a Commercial Soil Nucleic Acid Extraction Kit and PCR for the Detection of Clostridium tetanus and Clostridium chauvoei on Farms after Flooding in Taiwan
Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus, respectively. Since bacteria and spores are re-distributed by floods and then, subsequently, contaminate soils, pastures and water; the case nu...
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Published in | Journal of Veterinary Medical Science Vol. 75; no. 4; pp. 489 - 495 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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Japan
JAPANESE SOCIETY OF VETERINARY SCIENCE
2013
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Abstract | Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus, respectively. Since bacteria and spores are re-distributed by floods and then, subsequently, contaminate soils, pastures and water; the case numbers associated with clostridial diseases usually increase after floods. Because Taiwan is often affected by flood damage during the typhoon season, possible threats from these diseases are present. Thus, this study’s aim is to apply a combination of a commercial nucleic acid extraction kit and PCR to assess the prevalence of Clostridia spp. in soil and to compare the positivity rates for farms before and after floods. The minimum amounts of Clostridium tetanus and Clostridium chauvoei that could be extracted from soils and detected by PCR were 10 and 50 colony forming units (cfu), respectively. In total, 76 samples were collected from the central and southern regions of Taiwan, which are the areas that are most frequently damaged by typhoons. Noteworthy, the positive rates for Clostridium tetanus and Clostridium chauvoei in Pingtung county after the severe floods caused by a typhoon increased significantly from 13.73 and 7.84% to 53.85 and 50.00%, respectively. This study for the first time provides the evidence from surveillance data that there are changes in the environmental distribution of Clostridium spp. after floods. This study indicates that screening for soil-related zoonotic pathogens is a potential strategy that may help to control these diseases. |
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AbstractList | Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus, respectively. Since bacteria and spores are re-distributed by floods and then, subsequently, contaminate soils, pastures and water; the case numbers associated with clostridial diseases usually increase after floods. Because Taiwan is often affected by flood damage during the typhoon season, possible threats from these diseases are present. Thus, this study's aim is to apply a combination of a commercial nucleic acid extraction kit and PCR to assess the prevalence of Clostridia spp. in soil and to compare the positivity rates for farms before and after floods. The minimum amounts of Clostridium tetanus and Clostridium chauvoei that could be extracted from soils and detected by PCR were 10 and 50 colony forming units (cfu), respectively. In total, 76 samples were collected from the central and southern regions of Taiwan, which are the areas that are most frequently damaged by typhoons. Noteworthy, the positive rates for Clostridium tetanus and Clostridium chauvoei in Pingtung county after the severe floods caused by a typhoon increased significantly from 13.73 and 7.84% to 53.85 and 50.00%, respectively. This study for the first time provides the evidence from surveillance data that there are changes in the environmental distribution of Clostridium spp. after floods. This study indicates that screening for soil-related zoonotic pathogens is a potential strategy that may help to control these diseases. Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus, respectively. Since bacteria and spores are re-distributed by floods and then, subsequently, contaminate soils, pastures and water; the case numbers associated with clostridial diseases usually increase after floods. Because Taiwan is often affected by flood damage during the typhoon season, possible threats from these diseases are present. Thus, this study's aim is to apply a combination of a commercial nucleic acid extraction kit and PCR to assess the prevalence of Clostridia spp. in soil and to compare the positivity rates for farms before and after floods. The minimum amounts of Clostridium tetanus and Clostridium chauvoei that could be extracted from soils and detected by PCR were 10 and 50 colony forming units (cfu), respectively. In total, 76 samples were collected from the central and southern regions of Taiwan, which are the areas that are most frequently damaged by typhoons. Noteworthy, the positive rates for Clostridium tetanus and Clostridium chauvoei in Pingtung county after the severe floods caused by a typhoon increased significantly from 13.73 and 7.84% to 53.85 and 50.00%, respectively. This study for the first time provides the evidence from surveillance data that there are changes in the environmental distribution of Clostridium spp. after floods. This study indicates that screening for soil-related zoonotic pathogens is a potential strategy that may help to control these diseases.Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus, respectively. Since bacteria and spores are re-distributed by floods and then, subsequently, contaminate soils, pastures and water; the case numbers associated with clostridial diseases usually increase after floods. Because Taiwan is often affected by flood damage during the typhoon season, possible threats from these diseases are present. Thus, this study's aim is to apply a combination of a commercial nucleic acid extraction kit and PCR to assess the prevalence of Clostridia spp. in soil and to compare the positivity rates for farms before and after floods. The minimum amounts of Clostridium tetanus and Clostridium chauvoei that could be extracted from soils and detected by PCR were 10 and 50 colony forming units (cfu), respectively. In total, 76 samples were collected from the central and southern regions of Taiwan, which are the areas that are most frequently damaged by typhoons. Noteworthy, the positive rates for Clostridium tetanus and Clostridium chauvoei in Pingtung county after the severe floods caused by a typhoon increased significantly from 13.73 and 7.84% to 53.85 and 50.00%, respectively. This study for the first time provides the evidence from surveillance data that there are changes in the environmental distribution of Clostridium spp. after floods. This study indicates that screening for soil-related zoonotic pathogens is a potential strategy that may help to control these diseases. |
Author | HUANG, Shr-Wei TUNG, Kwon-Chung SHYU, Chin-Lin WANG, Chi-Young CHAN, Jacky Peng-Wen SHIA, Wei-Yau |
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Cites_doi | 10.1016/S0378-1135(97)00129-6 10.1016/j.mimet.2004.04.006 10.1128/AEM.69.5.2755-2764.2003 10.1136/vr.142.19.518 10.1007/BF02235324 10.1016/S0147-9571(99)00078-8 10.1053/rvsc.2000.0431 10.1111/j.1348-0421.1992.tb02058.x 10.1111/j.1439-0442.2007.00922.x 10.1385/ABAB:134:2:97 10.1017/S0022172400024906 10.1201/b10848-37 10.1016/j.mimet.2004.01.013 10.1111/j.1749-6632.2000.tb05352.x 10.1016/j.biotechadv.2008.08.002 10.1586/eri.11.155 |
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References | 3. Bagge, E., Sternberg Lewerin, S. and Johanssn, K. E. 2009. Detection and identification by PCR of clostridium chauvoei in clinical isolates, bovine feces and substrates from biogas plant. Acta Vet. Scand. 51: 8. 4. Benavides, E., Oritz, D. and Benavides, J. 2000. Association of botulism and tetanus as causative agents of an outbreak of bovine paralegic mortality in the eastern plains of Colombia. Ann. N. Y. Acad. Sci. 916: 646–649. 20. Uzal, F. A., Hugenholtz, P., Blackall, L. L., Petray, S., Moss, S., Assis, R. A., Miyakawa, M. F. and Carloni, G. 2003. PCR detection of Clostridium chauvoei in pure cultures and in formalin-fixed, paraffin-embedded tissues. Vet. Microbiol. 91: 239–248. 5. Centers for Disease Control. 2010. Statistics of Communicable Diseases and Surveillance Report (Department of Health ed.), Centers for Disease Control, Department of Health, Taipei, R. O. C. 2. Bagadi, H. O. 1978. The relationship between the annual rainfall and the outbreaks of blackquater in northern Nigeria. Trop. Anim. Health Prod. 10: 124–126. 12. Kouadio, I. K., Aljunid, S., Kamigaki, T., Hammad, K. and Oshitani, H. 2012. Infectious diseases following natural disasters: prevention and control measures. Expert Rev. Anti Infect. Ther. 10: 95–104. 22. Yamakawa, K. and Nakamura, S. 1992. Prevalence of Clostridium botulinum type E and coexistence of Clostridium botulinum nonproteolytic type B in the river soil of Japan. Microbiol. Immunol. 36: 583–591. 19. Smith, G. R., Milligan, R. A. and Moryson, C. J. 1978. Clostridium botulinum in aquatic environments in Great Britain and Ireland. J. Hyg. (Lond.) 80: 431–438. 18. Sasaki, Y., Yamamoto, K., Kojima, A., Norimatsu, M. and Tamura, Y. 2000. Rapid identification and differentiation of pathogenic clostridia in gas gangrene by polymerase chain reaction based on the 16S-23S rDNA spacer region. Res. Vet. Sci. 69: 289–294. 8. Ebisawa, I., Takayanagi, M., Kurata, M. and Kigawa, M. 1986. Density and distribution of Clostridium tetani in the soil. Jpn. J. Exp. Med. 56: 69–74. 10. Kirk, J. L., Beaudette, L. A., Hart, M., Moutoglis, P., Klironomos, J. N., Lee, H. and Trevors, J. T. 2004. Methods of studying soil microbial diversity. J. Microbiol. Methods 58: 169–188. 15. Radnedge, L., Agron, P. G., Hill, K. K., Jackson, P. J., Ticknor, L. O., Keim, P. and Andersen, G. L. 2003. Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl. Environ. Microbiol. 69: 2755–2764. 17. Roh, C., Villatte, F., Kim, B. G. and Schmid, R. D. 2006. Comparative study of methods for extraction and purification of environmental DNA from soil and sludge samples. Appl. Biochem. Biotechnol. 134: 97–112. 13. Kuhnert, P., Krampe, M., Capaul, S. E., Frey, J. and Nicolet, J. 1997. Identification of Clostridium chauvoei in cultures and clinical material from blackleg using PCR. Vet. Microbiol. 57: 291–298. 9. Hang’ombe, B. M., Isogai, E., Lungu, J., Mubita, C., Nambota, A., Kirisawa, R., Kimura, K. and Isoga, H. 2000. Detection and characterization of clostridium species in soil of Zambia. Comp. Immunol. Microbiol. Infect. Dis. 23: 277–284. 7. Driemeier, D., Schild, A. L., Fernandes, J. C. T., Colodel, E. M., Correa, A. M. R., Cruz, C. E. F. and Barros, C. S. L. 2007. Outbreaks of tetanus in beef cattle and sheep in Brazil associated with disophenol injection. J. Vet. Med. A Physiol. Pathol. Clin. Med. 54: 333–335. 14. Mumy, K. L. and Findlay, R. H. 2004. Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J. Microbiol. Methods 57: 259–268. 1. Aslani, M. R., Bazargani, T. T., Ashkar, A. A., Movasaghi, A. R., Raoofi, A. and Atiabi, N. 1998. Outbreaks of tetanus in lambs. Vet. Rec. 142: 518–519. 6. Cordoba, J. J., Aranda, E., Corboda, M. J., Benito, M. J. and Rodriguez, M. 2011. Section II Furmicutes and tenericutes: Clostrida. pp. 367–379. In: Molecular Detection of Human Bacterial Pathogens, 1st ed. (Liu, D. ed.), CRC Press, Florida. 16. Rajendhran, J. and Gunasekaran, P. 2008. Strategies for accessing soil metagenome for desired applications. Biotechnol. Adv. 26: 576–590. 11. Kadohira, M. and Samui, L. K. 1997. A study of risk factors assocaited with suspected blackquarter outbreaks in traditionally managed cattle in Lusaka province, Zambia. J. Vet. Epidemiol. 1: 43–48. 21. Wilkins, C. A., Richter, M. B., Hobbs, W. B., Whitcomb, M., Bergh, N. and Carstens, J. 1988. Occurrence of Clostridium tetani in soil and horses. S. Afr. Med. J. 73: 718–720. 11 22 12 13 14 15 16 17 18 19 1 2 3 4 5 6 7 8 9 20 10 21 |
References_xml | – reference: 4. Benavides, E., Oritz, D. and Benavides, J. 2000. Association of botulism and tetanus as causative agents of an outbreak of bovine paralegic mortality in the eastern plains of Colombia. Ann. N. Y. Acad. Sci. 916: 646–649. – reference: 22. Yamakawa, K. and Nakamura, S. 1992. Prevalence of Clostridium botulinum type E and coexistence of Clostridium botulinum nonproteolytic type B in the river soil of Japan. Microbiol. Immunol. 36: 583–591. – reference: 14. Mumy, K. L. and Findlay, R. H. 2004. Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J. Microbiol. Methods 57: 259–268. – reference: 10. Kirk, J. L., Beaudette, L. A., Hart, M., Moutoglis, P., Klironomos, J. N., Lee, H. and Trevors, J. T. 2004. Methods of studying soil microbial diversity. J. Microbiol. Methods 58: 169–188. – reference: 15. Radnedge, L., Agron, P. G., Hill, K. K., Jackson, P. J., Ticknor, L. O., Keim, P. and Andersen, G. L. 2003. Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl. Environ. Microbiol. 69: 2755–2764. – reference: 17. Roh, C., Villatte, F., Kim, B. G. and Schmid, R. D. 2006. Comparative study of methods for extraction and purification of environmental DNA from soil and sludge samples. Appl. Biochem. Biotechnol. 134: 97–112. – reference: 1. Aslani, M. R., Bazargani, T. T., Ashkar, A. A., Movasaghi, A. R., Raoofi, A. and Atiabi, N. 1998. Outbreaks of tetanus in lambs. Vet. Rec. 142: 518–519. – reference: 13. Kuhnert, P., Krampe, M., Capaul, S. E., Frey, J. and Nicolet, J. 1997. Identification of Clostridium chauvoei in cultures and clinical material from blackleg using PCR. Vet. Microbiol. 57: 291–298. – reference: 9. Hang’ombe, B. M., Isogai, E., Lungu, J., Mubita, C., Nambota, A., Kirisawa, R., Kimura, K. and Isoga, H. 2000. Detection and characterization of clostridium species in soil of Zambia. Comp. Immunol. Microbiol. Infect. Dis. 23: 277–284. – reference: 5. Centers for Disease Control. 2010. Statistics of Communicable Diseases and Surveillance Report (Department of Health ed.), Centers for Disease Control, Department of Health, Taipei, R. O. C. – reference: 20. Uzal, F. A., Hugenholtz, P., Blackall, L. L., Petray, S., Moss, S., Assis, R. A., Miyakawa, M. F. and Carloni, G. 2003. PCR detection of Clostridium chauvoei in pure cultures and in formalin-fixed, paraffin-embedded tissues. Vet. Microbiol. 91: 239–248. – reference: 18. Sasaki, Y., Yamamoto, K., Kojima, A., Norimatsu, M. and Tamura, Y. 2000. Rapid identification and differentiation of pathogenic clostridia in gas gangrene by polymerase chain reaction based on the 16S-23S rDNA spacer region. Res. Vet. Sci. 69: 289–294. – reference: 16. Rajendhran, J. and Gunasekaran, P. 2008. Strategies for accessing soil metagenome for desired applications. Biotechnol. Adv. 26: 576–590. – reference: 2. Bagadi, H. O. 1978. The relationship between the annual rainfall and the outbreaks of blackquater in northern Nigeria. Trop. Anim. Health Prod. 10: 124–126. – reference: 8. Ebisawa, I., Takayanagi, M., Kurata, M. and Kigawa, M. 1986. Density and distribution of Clostridium tetani in the soil. Jpn. J. Exp. Med. 56: 69–74. – reference: 12. Kouadio, I. K., Aljunid, S., Kamigaki, T., Hammad, K. and Oshitani, H. 2012. Infectious diseases following natural disasters: prevention and control measures. Expert Rev. Anti Infect. Ther. 10: 95–104. – reference: 7. Driemeier, D., Schild, A. L., Fernandes, J. C. T., Colodel, E. M., Correa, A. M. R., Cruz, C. E. F. and Barros, C. S. L. 2007. Outbreaks of tetanus in beef cattle and sheep in Brazil associated with disophenol injection. J. Vet. Med. A Physiol. Pathol. Clin. Med. 54: 333–335. – reference: 21. Wilkins, C. A., Richter, M. B., Hobbs, W. B., Whitcomb, M., Bergh, N. and Carstens, J. 1988. Occurrence of Clostridium tetani in soil and horses. S. Afr. Med. J. 73: 718–720. – reference: 11. Kadohira, M. and Samui, L. K. 1997. A study of risk factors assocaited with suspected blackquarter outbreaks in traditionally managed cattle in Lusaka province, Zambia. J. Vet. Epidemiol. 1: 43–48. – reference: 3. Bagge, E., Sternberg Lewerin, S. and Johanssn, K. E. 2009. Detection and identification by PCR of clostridium chauvoei in clinical isolates, bovine feces and substrates from biogas plant. Acta Vet. Scand. 51: 8. – reference: 6. Cordoba, J. J., Aranda, E., Corboda, M. J., Benito, M. J. and Rodriguez, M. 2011. Section II Furmicutes and tenericutes: Clostrida. pp. 367–379. In: Molecular Detection of Human Bacterial Pathogens, 1st ed. (Liu, D. ed.), CRC Press, Florida. – reference: 19. Smith, G. R., Milligan, R. A. and Moryson, C. J. 1978. Clostridium botulinum in aquatic environments in Great Britain and Ireland. J. Hyg. (Lond.) 80: 431–438. – ident: 3 – ident: 5 – ident: 13 doi: 10.1016/S0378-1135(97)00129-6 – ident: 10 doi: 10.1016/j.mimet.2004.04.006 – ident: 11 – ident: 15 doi: 10.1128/AEM.69.5.2755-2764.2003 – ident: 1 doi: 10.1136/vr.142.19.518 – ident: 2 doi: 10.1007/BF02235324 – ident: 9 doi: 10.1016/S0147-9571(99)00078-8 – ident: 18 doi: 10.1053/rvsc.2000.0431 – ident: 22 doi: 10.1111/j.1348-0421.1992.tb02058.x – ident: 7 doi: 10.1111/j.1439-0442.2007.00922.x – ident: 17 doi: 10.1385/ABAB:134:2:97 – ident: 19 doi: 10.1017/S0022172400024906 – ident: 6 doi: 10.1201/b10848-37 – ident: 14 doi: 10.1016/j.mimet.2004.01.013 – ident: 8 – ident: 21 – ident: 4 doi: 10.1111/j.1749-6632.2000.tb05352.x – ident: 20 – ident: 16 doi: 10.1016/j.biotechadv.2008.08.002 – ident: 12 doi: 10.1586/eri.11.155 |
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Snippet | Clostridial diseases are zoonoses and are classified as soil-borne diseases. Clostridium chauvoei and Clostridium tetani cause blackleg disease and tetanus,... |
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SubjectTerms | Animals bacterial zoonoses Cattle Cattle Diseases - epidemiology Cattle Diseases - microbiology Clostridium chauvoei - genetics Clostridium chauvoei - isolation & purification Clostridium Infections - epidemiology Clostridium tetani - genetics Clostridium tetani - isolation & purification diagnose DNA, Bacterial - chemistry DNA, Bacterial - genetics Floods PCR Polymerase Chain Reaction - veterinary RNA, Ribosomal, 16S - chemistry RNA, Ribosomal, 16S - genetics Soil Microbiology Taiwan - epidemiology Zoonoses - epidemiology Zoonoses - microbiology |
Title | The Utilization of a Commercial Soil Nucleic Acid Extraction Kit and PCR for the Detection of Clostridium tetanus and Clostridium chauvoei on Farms after Flooding in Taiwan |
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