QTL mapping of fruit quality traits in tetraploid kiwiberry (Actinidia arguta)

Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial and dioecious fruit crop remains largely unknown. This study aimed to identify the underlying genetic basis of fruit quality traits in A. arg...

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Published inHorticultural plant journal Vol. 11; no. 3; pp. 1090 - 1102
Main Authors Wang, Ran, Bourke, Peter M., Li, Sikai, Lin, Miaomiao, Sun, Leiming, Gu, Hong, Li, Yukuo, Visser, Richard G.F., Qi, Xiujuan, Maliepaard, Chris, Fang, Jinbao
Format Journal Article
LanguageEnglish
Published Beijing Elsevier B.V 01.05.2025
KeAi Publishing Communications Ltd
KeAi Communications Co., Ltd
Subjects
Actinidia arguta
Biosynthesis
Breeding
chromosome mapping
Color
Cost effectiveness
Crops
Cultivars
dioecy
Females
Food quality
fruit color
fruit morphology
fruit quality
fruit weight
Fruits
Gene mapping
Gene polymorphism
genes
Genomes
horticultural crops
Kiwiberry
Kiwifruit
Mapping
Nucleotides
Plant breeding
Polymorphism
Polyploid genetics
QTL mapping
Quantitative trait loci
Single-nucleotide polymorphism
tetraploidy
Transcription factors
China
Kiwiberry
Breeding
Polyploid genetics
QTL mapping
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Abstract Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial and dioecious fruit crop remains largely unknown. This study aimed to identify the underlying genetic basis of fruit quality traits in A. arguta, using a single nucleotide polymorphism (SNP) genetic linkage map previously developed in a tetraploid F1 population of ‘Ruby-3’ × ‘KuiLv-M’. The F1 population was phenotyped over three years (2020–2022) for fruit quality traits, including skin color, flesh color, fruit weight, fruit diameter, total soluble solids, fruit longitudinal diameter and fruit shape index. A total of nine QTLs were detected for five traits, explaining 10%–32% of the trait variation. For fruit color, the support interval of a major QTL on LG9 contained an MYB transcription factor MYB110, which was previously demonstrated to control color regulation in kiwifruit, thus suggesting that the MYB110 is the candidate gene for fruit color in kiwiberry. The linked marker for fruit color was validated in an F1 population and 25 kiwiberry cultivars. In conclusion, the knowledge obtained through the QTL mapping is applicable to improve the efficiency and cost-effectiveness in kiwiberry breeding.
AbstractList Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial and dioecious fruit crop remains largely unknown. This study aimed to identify the underlying genetic basis of fruit quality traits in A. arguta, using a single nucleotide polymorphism (SNP) genetic linkage map previously developed in a tetraploid F1 population of ‘Ruby-3’ × ‘KuiLv-M’. The F1 population was phenotyped over three years (2020–2022) for fruit quality traits, including skin color, flesh color, fruit weight, fruit diameter, total soluble solids, fruit longitudinal diameter and fruit shape index. A total of nine QTLs were detected for five traits, explaining 10%–32% of the trait variation. For fruit color, the support interval of a major QTL on LG9 contained an MYB transcription factor MYB110, which was previously demonstrated to control color regulation in kiwifruit, thus suggesting that the MYB110 is the candidate gene for fruit color in kiwiberry. The linked marker for fruit color was validated in an F1 population and 25 kiwiberry cultivars. In conclusion, the knowledge obtained through the QTL mapping is applicable to improve the efficiency and cost-effectiveness in kiwiberry breeding.
Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial and dioecious fruit crop remains largely unknown. This study aimed to identify the underlying genetic basis of fruit quality traits in A. arguta, using a single nucleotide polymorphism (SNP) genetic linkage map previously developed in a tetraploid F₁ population of ‘Ruby-3’ × ‘KuiLv-M’. The F₁ population was phenotyped over three years (2020–2022) for fruit quality traits, including skin color, flesh color, fruit weight, fruit diameter, total soluble solids, fruit longitudinal diameter and fruit shape index. A total of nine QTLs were detected for five traits, explaining 10%–32% of the trait variation. For fruit color, the support interval of a major QTL on LG9 contained an MYB transcription factor MYB110, which was previously demonstrated to control color regulation in kiwifruit, thus suggesting that the MYB110 is the candidate gene for fruit color in kiwiberry. The linked marker for fruit color was validated in an F₁ population and 25 kiwiberry cultivars. In conclusion, the knowledge obtained through the QTL mapping is applicable to improve the efficiency and cost-effectiveness in kiwiberry breeding.
Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial and dioecious fruit crop remains largely unknown. This study aimed to identify the underlying genetic basis of fruit quality traits in A. arguta, using a single nucleotide polymorphism (SNP) genetic linkage map previously developed in a tetraploid F1 population of 'Ruby-3' x 'KuiLv-M'. The F1 population was phenotyped over three years (2020-2022) for fruit quality traits, including skin color, flesh color, fruit weight, fruit diameter, total soluble solids, fruit longitudinal diameter and fruit shape index. A total of nine QTLs were detected for five traits, explaining 10%-32% of the trait variation. For fruit color, the support interval of a major QTL on LG9 contained an MYB transcription factor MYB110, which was previously demonstrated to control color regulation in kiwifruit, thus suggesting that the MYB110 is the candidate gene for fruit color in kiwiberry. The linked marker for fruit color was validated in an F1 population and 25 kiwiberry cultivars. In conclusion, the knowledge obtained through the QTL mapping is applicable to improve the efficiency and cost-effectiveness in kiwiberry breeding.
Author Li, Sikai
Gu, Hong
Sun, Leiming
Fang, Jinbao
Wang, Ran
Bourke, Peter M.
Qi, Xiujuan
Lin, Miaomiao
Visser, Richard G.F.
Maliepaard, Chris
Li, Yukuo
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– sequence: 2
  givenname: Peter M.
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  givenname: Sikai
  surname: Li
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  organization: Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crop, Zhengzhou, Henan 450009, China
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  givenname: Miaomiao
  surname: Lin
  fullname: Lin, Miaomiao
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  givenname: Hong
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  givenname: Yukuo
  surname: Li
  fullname: Li, Yukuo
  organization: Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crop, Zhengzhou, Henan 450009, China
– sequence: 8
  givenname: Richard G.F.
  surname: Visser
  fullname: Visser, Richard G.F.
  organization: Plant Breeding, Wageningen University & Research, 6700 AJ Wageningen, Netherlands
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  givenname: Xiujuan
  surname: Qi
  fullname: Qi, Xiujuan
  email: qixiujuan@caas.cn
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  givenname: Chris
  surname: Maliepaard
  fullname: Maliepaard, Chris
  email: chris.maliepaard@wur.nl
  organization: Plant Breeding, Wageningen University & Research, 6700 AJ Wageningen, Netherlands
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  givenname: Jinbao
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  organization: Zhengzhou Fruit Research Institute, Chinese Academy of Agricultural Sciences, National Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crop, Zhengzhou, Henan 450009, China
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Keywords Kiwiberry
Breeding
Polyploid genetics
QTL mapping
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Snippet Fruit quality traits play an important role in consumption of kiwiberry (Actinidia arguta). The genetic basis of fruit quality traits in this woody, perennial...
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SubjectTerms Actinidia arguta
Biosynthesis
Breeding
chromosome mapping
Color
Cost effectiveness
Crops
Cultivars
dioecy
Females
Food quality
fruit color
fruit morphology
fruit quality
fruit weight
Fruits
Gene mapping
Gene polymorphism
genes
Genomes
horticultural crops
Kiwiberry
Kiwifruit
Mapping
Nucleotides
Plant breeding
Polymorphism
Polyploid genetics
QTL mapping
Quantitative trait loci
Single-nucleotide polymorphism
tetraploidy
Transcription factors
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Title QTL mapping of fruit quality traits in tetraploid kiwiberry (Actinidia arguta)
URI https://dx.doi.org/10.1016/j.hpj.2023.12.014
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Volume 11
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