BCL7A and BCL7B potentiate SWI/SNF-complex-mediated chromatin accessibility to regulate gene expression and vegetative phase transition in plants

Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in euka...

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Published inNature communications Vol. 15; no. 1; pp. 935 - 19
Main Authors Lei, Yawen, Yu, Yaoguang, Fu, Wei, Zhu, Tao, Wu, Caihong, Zhang, Zhihao, Yu, Zewang, Song, Xin, Xu, Jianqu, Liang, Zhenwei, Lü, Peitao, Li, Chenlong
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 31.01.2024
Nature Publishing Group
Nature Portfolio
Subjects
13/1
14/35
38/15
38/22
38/23
38/39
38/77
38/88
38/90
38/91
631/208/176
631/449/2653/2656
631/449/2653/2658
82/58
Accessibility
B-cell lymphoma
Chromatin remodeling
Eukaryotes
Gene expression
Genomes
Genomics
Humanities and Social Sciences
Leukemia
Lymphocytes B
Lymphoma
miRNA
multidisciplinary
Phase transitions
Plants (botany)
Science
Science (multidisciplinary)
Sucrose
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Abstract Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility. This study uncovers the specialized function of previously elusive BCL7 subunits of SWI/SNF complexes in eukaryotes and reveals the mechanism whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
AbstractList Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility. This study uncovers the specialized function of previously elusive BCL7 subunits of SWI/SNF complexes in eukaryotes and reveals the mechanism whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.This study uncovers the specialized function of previously elusive BCL7 subunits of SWI/SNF complexes in eukaryotes and reveals the mechanism whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
Abstract Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin accessibility and gene expression by regulating chromatin structure. However, how the remodeling activities of SWI/SNF complexes are regulated in eukaryotes remains elusive. B-cell lymphoma/leukemia protein 7 A/B/C (BCL7A/B/C) have been reported as subunits of SWI/SNF complexes for decades in animals and recently in plants; however, the role of BCL7 subunits in SWI/SNF function remains undefined. Here, we identify a unique role for plant BCL7A and BCL7B homologous subunits in potentiating the genome-wide chromatin remodeling activities of SWI/SNF complexes in plants. BCL7A/B require the catalytic ATPase BRAHMA (BRM) to assemble with the signature subunits of the BRM-Associated SWI/SNF complexes (BAS) and for genomic binding at a subset of target genes. Loss of BCL7A and BCL7B diminishes BAS-mediated genome-wide chromatin accessibility without changing the stability and genomic targeting of the BAS complex, highlighting the specialized role of BCL7A/B in regulating remodeling activity. We further show that BCL7A/B fine-tune the remodeling activity of BAS complexes to generate accessible chromatin at the juvenility resetting region (JRR) of the microRNAs MIR156A/C for plant juvenile identity maintenance. In summary, our work uncovers the function of previously elusive SWI/SNF subunits in multicellular eukaryotes and provides insights into the mechanisms whereby plants memorize the juvenile identity through SWI/SNF-mediated control of chromatin accessibility.
ArticleNumber 935
Author Yu, Yaoguang
Zhu, Tao
Li, Chenlong
Liang, Zhenwei
Lü, Peitao
Song, Xin
Wu, Caihong
Yu, Zewang
Xu, Jianqu
Lei, Yawen
Fu, Wei
Zhang, Zhihao
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/38296999$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1038/s41576-018-0089-8
10.1038/nmeth.4197
10.1111/jipb.13208
10.1038/nprot.2012.101
10.1038/s42003-022-03490-x
10.1038/s41467-021-22352-4
10.1105/tpc.20.00267
10.1186/1746-4811-3-12
10.1038/nature08911
10.1093/molbev/msab120
10.1073/pnas.2115667118
10.1038/nprot.2006.286
10.1371/journal.pgen.1007337
10.1038/ng2079
10.1016/j.molp.2021.03.018
10.1038/s41477-022-01110-4
10.1038/nbt.1754
10.1038/nature10730
10.1038/ng.2628
10.1105/tpc.15.00091
10.1038/s41588-021-00777-3
10.1038/nmeth.1923
10.1038/s41588-020-00768-w
10.1371/journal.pgen.1006263
10.1038/s41467-019-09891-7
10.1242/dev.01363
10.1016/S0960-9822(01)00651-0
10.1016/j.gde.2009.06.001
10.1038/s41375-020-0919-5
10.1038/nrm.2017.26
10.1016/j.cell.2009.06.031
10.1046/j.1365-313x.1998.00343.x
10.1038/nprot.2007.199
10.1093/plcell/koaa043
10.1111/j.1365-313X.2009.04048.x
10.1016/j.pbi.2015.05.009
10.1105/tpc.15.00854
10.1038/ng.3744
10.1242/dev.02521
10.1146/annurev.biochem.77.062706.153223
10.1016/j.celrep.2017.12.099
10.1093/nar/gkac826
10.1016/j.cell.2018.09.032
10.1016/j.cell.2023.10.006
10.1093/nar/gkz239
10.1038/s41477-020-0734-z
10.1111/tpj.12499
10.1016/j.devcel.2020.07.003
10.7554/eLife.00260
10.1038/s41594-019-0273-3
10.1093/nar/gkw1179
10.2144/03342mt01
10.7554/eLife.61894
10.1016/j.devcel.2021.12.019
10.1186/s13059-014-0550-8
10.1104/pp.16.01588
10.1016/j.cell.2009.06.014
10.1016/j.cell.2020.09.051
10.1104/pp.103.027979
10.1038/s41477-022-01282-z
10.1073/pnas.1113409109
10.1242/dev.02508
10.1038/ng.3958
10.1371/journal.pgen.1004921
10.1038/s41467-018-07528-9
10.1038/ng.3555
10.1105/tpc.17.00581
10.1038/s41576-020-0278-0
10.1073/pnas.2107558118
10.1093/bioinformatics/btv145
10.1038/s41588-022-01077-0
10.1093/nar/gkx267
10.1111/tpj.13882
10.1093/nar/gkac1126
10.1016/j.cell.2006.05.005
10.1242/dev.124.3.645
10.1093/plcell/koad111
10.7554/eLife.00269
10.1016/j.tplants.2016.01.017
10.1371/journal.pgen.1004944
10.1016/1044-0305(94)80016-2
10.1105/tpc.17.00056
10.1242/dev.063511
10.1038/s41477-018-0290-y
10.1093/nar/gkw257
10.1111/tpj.12877
10.1126/science.aaz9761
10.1016/j.molp.2021.01.001
10.1093/plcell/koab255
10.1101/gr.142067.112
10.1038/ncomms5909
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References Love, Huber, Anders (CR77) 2014; 15
Clapier, Cairns (CR5) 2009; 78
Wagner, Meyerowitz (CR49) 2002; 12
Han, Wu, Cui, Wagner (CR12) 2015; 83
Yang (CR48) 2015; 27
Curtis, Grossniklaus (CR67) 2003; 133
Kubik (CR38) 2019; 26
Gatchalian (CR10) 2018; 9
Wu (CR56) 2012; 109
Uehara, Kage-Nakadai, Yoshina, Imae, Mitani (CR36) 2015; 11
Wu (CR29) 2009; 138
Kwon (CR51) 2006; 133
Chen (CR89) 2013; 23
He (CR27) 2018; 14
Farmer, Thibivilliers, Ryu, Schiefelbein, Libault (CR64) 2021; 14
Cenik, Shilatifard (CR6) 2021; 22
Wu, Poethig (CR24) 2006; 133
Qi (CR73) 2017; 29
Li (CR47) 2015; 11
Zhang (CR76) 2017; 45
Sijacic, Bajic, McKinney, Meagher, Deal (CR60) 2018; 94
Shu, Ding, Liu, Cui, Chen (CR87) 2022; 50
Borg (CR58) 2021; 10
Li (CR31) 2016; 48
Tamura, Stecher, Kumar (CR90) 2021; 38
Balinas-Gavira (CR35) 2020; 34
Tian (CR62) 2021; 33
Xu, Hu, Smith, Poethig (CR50) 2016; 28
Iurlaro (CR3) 2021; 53
CR88
Schick (CR2) 2021; 53
Ross-Innes (CR84) 2012; 481
Lu (CR70) 2010; 61
Yang, Xu, Koo, He, Poethig (CR43) 2013; 2
Clough, Bent (CR68) 1998; 16
Xu (CR44) 2016; 12
Varkonyi-Gasic, Wu, Wood, Walton, Hellens (CR74) 2007; 3
Schmitz (CR39) 2022; 34
Wang (CR52) 2020; 54
Xu (CR41) 2016; 172
Shang, He (CR13) 2022; 64
Franco-Zorrilla (CR45) 2007; 39
Hernandez-Garcia (CR33) 2022; 5
Sarnowska (CR8) 2016; 21
Kadoch (CR34) 2013; 45
Feng, Liu, Qin, Zhang, Liu (CR80) 2012; 7
Yu (CR15) 2021; 14
Potter, Wang, Schaller, Kieber (CR59) 2018; 4
Nakayama (CR20) 2017; 49
He (CR54) 2020; 367
Robinson (CR82) 2011; 29
Yu (CR14) 2020; 6
Huijser, Schmid (CR22) 2011; 138
St Pierre (CR18) 2022; 54
Telfer, Bollman, Poethig (CR40) 1997; 124
Diego-Martin (CR32) 2022; 50
Wang (CR21) 2019; 10
Ho, Crabtree (CR7) 2010; 463
Yu, Wang, He (CR83) 2015; 31
Yu, Lian, Wang (CR26) 2015; 27
Baurle, Dean (CR23) 2006; 125
Li (CR86) 2014; 78
Xia (CR69) 2020; 32
Cheng (CR55) 2021; 118
Patro, Duggal, Love, Irizarry, Kingsford (CR75) 2017; 14
Mathur (CR19) 2017; 49
Mashtalir (CR11) 2018; 175
Yoo, Cho, Sheen (CR85) 2007; 2
Martin (CR9) 2023; 186
Saeed (CR78) 2003; 34
Langmead, Salzberg (CR79) 2012; 9
Mashtalir (CR53) 2020; 183
Wu (CR66) 2022; 57
Fu (CR17) 2023; 35
Zhang, Chen, Liu, Lin, Wang (CR63) 2021; 12
Barragan-Rosillo (CR57) 2021; 118
Sparkes, Runions, Kearns, Hawes (CR71) 2006; 1
Wang, Czech, Weigel (CR28) 2009; 138
Eng, McCormack, Yates (CR72) 1994; 5
Guo (CR16) 2022; 8
Gao (CR30) 2022; 8
Yu (CR42) 2013; 2
Letunic, Bork (CR91) 2019; 47
Farrona, Hurtado, Bowman, Reyes (CR46) 2004; 131
Maher (CR61) 2018; 30
Klemm, Shipony, Greenleaf (CR1) 2019; 20
Clapier, Iwasa, Cairns, Peterson (CR4) 2017; 18
Poethig (CR25) 2009; 19
Lu, Hofmeister, Vollmers, DuBois, Schmitz (CR65) 2017; 45
Zhao, Zhang, Yang, Zhu, Li (CR37) 2018; 22
Ramírez, Ryan, Grüning (CR81) 2016; 44
J Guo (45250_CR16) 2022; 8
T Uehara (45250_CR36) 2015; 11
P Huijser (45250_CR22) 2011; 138
K Chen (45250_CR89) 2013; 23
SD Yoo (45250_CR85) 2007; 2
BJE Martin (45250_CR9) 2023; 186
Z Lu (45250_CR65) 2017; 45
L Yang (45250_CR43) 2013; 2
R Mathur (45250_CR19) 2017; 49
Q Lu (45250_CR70) 2010; 61
CR Clapier (45250_CR5) 2009; 78
G Wu (45250_CR29) 2009; 138
J Gao (45250_CR30) 2022; 8
MI Love (45250_CR77) 2014; 15
B Diego-Martin (45250_CR32) 2022; 50
SK Han (45250_CR12) 2015; 83
Y Yu (45250_CR15) 2021; 14
SJ Clough (45250_CR68) 1998; 16
H Tian (45250_CR62) 2021; 33
45250_CR88
M Iurlaro (45250_CR3) 2021; 53
FX Wang (45250_CR52) 2020; 54
S He (45250_CR54) 2020; 367
JY Shang (45250_CR13) 2022; 64
C Li (45250_CR31) 2016; 48
C Li (45250_CR47) 2015; 11
Y-J Cheng (45250_CR55) 2021; 118
J Hernandez-Garcia (45250_CR33) 2022; 5
M Borg (45250_CR58) 2021; 10
G Li (45250_CR86) 2014; 78
RJ Schmitz (45250_CR39) 2022; 34
E Varkonyi-Gasic (45250_CR74) 2007; 3
L Ho (45250_CR7) 2010; 463
SL Klemm (45250_CR1) 2019; 20
S Kubik (45250_CR38) 2019; 26
J He (45250_CR27) 2018; 14
S Yu (45250_CR26) 2015; 27
KC Potter (45250_CR59) 2018; 4
C Kadoch (45250_CR34) 2013; 45
JT Robinson (45250_CR82) 2011; 29
N Mashtalir (45250_CR11) 2018; 175
G Yu (45250_CR83) 2015; 31
D Wagner (45250_CR49) 2002; 12
Y Yu (45250_CR14) 2020; 6
RS Poethig (45250_CR25) 2009; 19
R St Pierre (45250_CR18) 2022; 54
H Qi (45250_CR73) 2017; 29
S Yu (45250_CR42) 2013; 2
J Shu (45250_CR87) 2022; 50
JK Eng (45250_CR72) 1994; 5
MD Curtis (45250_CR67) 2003; 133
E Sarnowska (45250_CR8) 2016; 21
J Gatchalian (45250_CR10) 2018; 9
JM Franco-Zorrilla (45250_CR45) 2007; 39
R Zhang (45250_CR76) 2017; 45
FN Xia (45250_CR69) 2020; 32
BK Cenik (45250_CR6) 2021; 22
KA Maher (45250_CR61) 2018; 30
P Sijacic (45250_CR60) 2018; 94
S Schick (45250_CR2) 2021; 53
TQ Zhang (45250_CR63) 2021; 12
J Feng (45250_CR80) 2012; 7
C Balinas-Gavira (45250_CR35) 2020; 34
M Xu (45250_CR44) 2016; 12
A Farmer (45250_CR64) 2021; 14
F Ramírez (45250_CR81) 2016; 44
CR Clapier (45250_CR4) 2017; 18
Y Xu (45250_CR41) 2016; 172
CS Kwon (45250_CR51) 2006; 133
RT Nakayama (45250_CR20) 2017; 49
JW Wang (45250_CR28) 2009; 138
W Fu (45250_CR17) 2023; 35
N Mashtalir (45250_CR53) 2020; 183
K Tamura (45250_CR90) 2021; 38
S Farrona (45250_CR46) 2004; 131
S Yang (45250_CR48) 2015; 27
AC Barragan-Rosillo (45250_CR57) 2021; 118
I Baurle (45250_CR23) 2006; 125
S Zhao (45250_CR37) 2018; 22
A Telfer (45250_CR40) 1997; 124
R Patro (45250_CR75) 2017; 14
MF Wu (45250_CR56) 2012; 109
X Wang (45250_CR21) 2019; 10
CS Ross-Innes (45250_CR84) 2012; 481
B Langmead (45250_CR79) 2012; 9
IA Sparkes (45250_CR71) 2006; 1
M Xu (45250_CR50) 2016; 28
AI Saeed (45250_CR78) 2003; 34
LY Wu (45250_CR66) 2022; 57
I Letunic (45250_CR91) 2019; 47
G Wu (45250_CR24) 2006; 133
References_xml – volume: 20
  start-page: 207
  year: 2019
  end-page: 220
  ident: CR1
  article-title: Chromatin accessibility and the regulatory epigenome
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/s41576-018-0089-8
– volume: 14
  start-page: 417
  year: 2017
  end-page: 419
  ident: CR75
  article-title: Salmon provides fast and bias-aware quantification of transcript expression
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4197
– volume: 64
  start-page: 499
  year: 2022
  end-page: 515
  ident: CR13
  article-title: Chromatin‐remodeling complexes: conserved and plant‐specific subunits in Arabidopsis
  publication-title: J. Integr. Plant Biol.
  doi: 10.1111/jipb.13208
– volume: 7
  start-page: 1728
  year: 2012
  end-page: 1740
  ident: CR80
  article-title: Identifying ChIP-seq enrichment using MACS
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2012.101
– volume: 5
  start-page: 549
  year: 2022
  ident: CR33
  article-title: Comprehensive identification of SWI/SNF complex subunits underpins deep eukaryotic ancestry and reveals new plant components
  publication-title: Commun. Biol.
  doi: 10.1038/s42003-022-03490-x
– volume: 12
  year: 2021
  ident: CR63
  article-title: Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-22352-4
– volume: 32
  start-page: 3290
  year: 2020
  end-page: 3310
  ident: CR69
  article-title: SINAT E3 ubiquitin ligases mediate FREE1 and VPS23A degradation to modulate abscisic acid signaling
  publication-title: Plant Cell
  doi: 10.1105/tpc.20.00267
– volume: 3
  year: 2007
  ident: CR74
  article-title: Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAs
  publication-title: Plant Methods
  doi: 10.1186/1746-4811-3-12
– volume: 463
  start-page: 474
  year: 2010
  end-page: 484
  ident: CR7
  article-title: Chromatin remodelling during development
  publication-title: Nature
  doi: 10.1038/nature08911
– volume: 38
  start-page: 3022
  year: 2021
  end-page: 3027
  ident: CR90
  article-title: MEGA11: molecular evolutionary genetics analysis version 11
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msab120
– volume: 118
  start-page: e2115667118
  year: 2021
  ident: CR55
  article-title: Cell division in the shoot apical meristem is a trigger for miR156 decline and vegetative phase transition in Arabidopsis
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.2115667118
– volume: 1
  start-page: 2019
  year: 2006
  end-page: 2025
  ident: CR71
  article-title: Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2006.286
– volume: 14
  start-page: e1007337
  year: 2018
  ident: CR27
  article-title: Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana
  publication-title: PLoS Genet
  doi: 10.1371/journal.pgen.1007337
– volume: 39
  start-page: 1033
  year: 2007
  end-page: 1037
  ident: CR45
  article-title: Target mimicry provides a new mechanism for regulation of microRNA activity
  publication-title: Nat. Genet.
  doi: 10.1038/ng2079
– volume: 14
  start-page: 888
  year: 2021
  end-page: 904
  ident: CR15
  article-title: Bromodomain-containing proteins BRD1, BRD2, and BRD13 are core subunits of SWI/SNF complexes and vital for their genomic targeting in
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2021.03.018
– volume: 8
  start-page: 257
  year: 2022
  end-page: 268
  ident: CR30
  article-title: A robust mechanism for resetting juvenility during each generation in Arabidopsis
  publication-title: Nat. Plants
  doi: 10.1038/s41477-022-01110-4
– volume: 29
  start-page: 24
  year: 2011
  end-page: 26
  ident: CR82
  article-title: Integrative genomics viewer
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1754
– volume: 481
  start-page: 389
  year: 2012
  end-page: 393
  ident: CR84
  article-title: Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
  publication-title: Nature
  doi: 10.1038/nature10730
– volume: 45
  start-page: 592
  year: 2013
  end-page: 601
  ident: CR34
  article-title: Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy
  publication-title: Nat. Genet.
  doi: 10.1038/ng.2628
– volume: 27
  start-page: 1670
  year: 2015
  end-page: 1680
  ident: CR48
  article-title: The Arabidopsis SWI2/SNF2 chromatin remodeling ATPase BRAHMA targets directly to PINs and is required for root stem cell niche maintenance
  publication-title: Plant Cell
  doi: 10.1105/tpc.15.00091
– volume: 53
  start-page: 269
  year: 2021
  end-page: 278
  ident: CR2
  article-title: Acute BAF perturbation causes immediate changes in chromatin accessibility
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-021-00777-3
– volume: 9
  start-page: 357
  year: 2012
  end-page: 359
  ident: CR79
  article-title: Fast gapped-read alignment with Bowtie 2
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.1923
– volume: 53
  start-page: 279
  year: 2021
  end-page: 287
  ident: CR3
  article-title: Mammalian SWI/SNF continuously restores local accessibility to chromatin
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-020-00768-w
– volume: 12
  start-page: e1006263
  year: 2016
  ident: CR44
  article-title: Developmental functions of miR156-regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) genes in Arabidopsis thaliana
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1006263
– volume: 10
  year: 2019
  ident: CR21
  article-title: BRD9 defines a SWI/SNF sub-complex and constitutes a specific vulnerability in malignant rhabdoid tumors
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-09891-7
– volume: 131
  start-page: 4965
  year: 2004
  end-page: 4975
  ident: CR46
  article-title: The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering
  publication-title: Development
  doi: 10.1242/dev.01363
– volume: 12
  start-page: 85
  year: 2002
  end-page: 94
  ident: CR49
  article-title: SPLAYED, a novel SWI/SNF ATPase homolog, controls reproductive development in Arabidopsis
  publication-title: Curr. Biol.
  doi: 10.1016/S0960-9822(01)00651-0
– volume: 19
  start-page: 374
  year: 2009
  end-page: 378
  ident: CR25
  article-title: Small RNAs and developmental timing in plants
  publication-title: Curr. Opin. Genet. Dev.
  doi: 10.1016/j.gde.2009.06.001
– volume: 34
  start-page: 2722
  year: 2020
  end-page: 2735
  ident: CR35
  article-title: Frequent mutations in the amino-terminal domain of BCL7A impair its tumor suppressor role in DLBCL
  publication-title: Leukemia
  doi: 10.1038/s41375-020-0919-5
– volume: 18
  start-page: 407
  year: 2017
  end-page: 422
  ident: CR4
  article-title: Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/nrm.2017.26
– ident: CR88
– volume: 138
  start-page: 750
  year: 2009
  end-page: 759
  ident: CR29
  article-title: The sequential action of miR156 and miR172 regulates developmental timing in Arabidopsis
  publication-title: Cell
  doi: 10.1016/j.cell.2009.06.031
– volume: 16
  start-page: 735
  year: 1998
  end-page: 743
  ident: CR68
  article-title: Floral dip: a simplified method for Agrobacterium-mediated transformation of
  publication-title: Plant J.
  doi: 10.1046/j.1365-313x.1998.00343.x
– volume: 2
  start-page: 1565
  year: 2007
  end-page: 1572
  ident: CR85
  article-title: Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2007.199
– volume: 33
  start-page: 475
  year: 2021
  end-page: 491
  ident: CR62
  article-title: Photoperiod-responsive changes in chromatin accessibility in phloem companion and epidermis cells of Arabidopsis leaves
  publication-title: Plant Cell
  doi: 10.1093/plcell/koaa043
– volume: 61
  start-page: 259
  year: 2010
  end-page: 270
  ident: CR70
  article-title: Arabidopsis homolog of the yeast TREX-2 mRNA export complex: components and anchoring nucleoporin
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2009.04048.x
– volume: 27
  start-page: 1
  year: 2015
  end-page: 7
  ident: CR26
  article-title: Plant developmental transitions: the role of microRNAs and sugars
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/j.pbi.2015.05.009
– volume: 28
  start-page: 28
  year: 2016
  end-page: 41
  ident: CR50
  article-title: Epigenetic regulation of vegetative phase change in Arabidopsis
  publication-title: Plant Cell
  doi: 10.1105/tpc.15.00854
– volume: 49
  start-page: 296
  year: 2017
  end-page: 302
  ident: CR19
  article-title: ARID1A loss impairs enhancer-mediated gene regulation and drives colon cancer in mice
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3744
– volume: 133
  start-page: 3539
  year: 2006
  end-page: 3547
  ident: CR24
  article-title: Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3
  publication-title: Development
  doi: 10.1242/dev.02521
– volume: 78
  start-page: 273
  year: 2009
  end-page: 304
  ident: CR5
  article-title: The biology of chromatin remodeling complexes
  publication-title: Annu. Rev. Biochem.
  doi: 10.1146/annurev.biochem.77.062706.153223
– volume: 22
  start-page: 1090
  year: 2018
  end-page: 1102
  ident: CR37
  article-title: Systematic profiling of histone readers in Arabidopsis thaliana
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2017.12.099
– volume: 50
  start-page: 10399
  year: 2022
  end-page: 10417
  ident: CR32
  article-title: The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac826
– volume: 175
  start-page: 1272
  year: 2018
  end-page: 1288
  ident: CR11
  article-title: Modular organization and assembly of SWI/SNF family chromatin remodeling complexes
  publication-title: Cell
  doi: 10.1016/j.cell.2018.09.032
– volume: 186
  start-page: 5290
  year: 2023
  end-page: 5307
  ident: CR9
  article-title: Global identification of SWI/SNF targets reveals compensation by EP400
  publication-title: Cell
  doi: 10.1016/j.cell.2023.10.006
– volume: 47
  start-page: W256
  year: 2019
  end-page: W259
  ident: CR91
  article-title: Interactive Tree Of Life (iTOL) v4: recent updates and new developments
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkz239
– volume: 6
  start-page: 996
  year: 2020
  end-page: 1007
  ident: CR14
  article-title: BRAHMA-interacting proteins BRIP1 and BRIP2 are core subunits of SWI/SNF complexes
  publication-title: Nat. Plants
  doi: 10.1038/s41477-020-0734-z
– volume: 78
  start-page: 706
  year: 2014
  end-page: 714
  ident: CR86
  article-title: ISWI proteins participate in the genome-wide nucleosome distribution in Arabidopsis
  publication-title: Plant J.
  doi: 10.1111/tpj.12499
– volume: 54
  start-page: 742
  year: 2020
  end-page: 757.e8
  ident: CR52
  article-title: Chromatin accessibility dynamics and a hierarchical transcriptional regulatory network structure for plant somatic embryogenesis
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2020.07.003
– volume: 2
  start-page: e00260
  year: 2013
  ident: CR43
  article-title: Sugar promotes vegetative phase change in Arabidopsis thaliana by repressing the expression of MIR156A and MIR156C
  publication-title: Elife
  doi: 10.7554/eLife.00260
– volume: 26
  start-page: 744
  year: 2019
  end-page: 754
  ident: CR38
  article-title: Opposing chromatin remodelers control transcription initiation frequency and start site selection
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/s41594-019-0273-3
– volume: 45
  start-page: e41
  year: 2017
  ident: CR65
  article-title: Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkw1179
– volume: 34
  start-page: 374
  year: 2003
  end-page: 378
  ident: CR78
  article-title: TM4: a free, open-source system for microarray data management and analysis
  publication-title: Biotechniques
  doi: 10.2144/03342mt01
– volume: 10
  start-page: e61894
  year: 2021
  ident: CR58
  article-title: Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis
  publication-title: Elife
  doi: 10.7554/eLife.61894
– volume: 57
  start-page: 526
  year: 2022
  end-page: 542
  ident: CR66
  article-title: Dynamic chromatin state profiling reveals regulatory roles of auxin and cytokinin in shoot regeneration
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2021.12.019
– volume: 15
  year: 2014
  ident: CR77
  article-title: Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
  publication-title: Genome Biol
  doi: 10.1186/s13059-014-0550-8
– volume: 172
  start-page: 2416
  year: 2016
  end-page: 2428
  ident: CR41
  article-title: Regulation of vegetative phase change by SWI2/SNF2 chromatin remodeling ATPase BRAHMA
  publication-title: Plant Physiol.
  doi: 10.1104/pp.16.01588
– volume: 138
  start-page: 738
  year: 2009
  end-page: 749
  ident: CR28
  article-title: miR156-regulated SPL transcription factors define an endogenous flowering pathway in Arabidopsis thaliana
  publication-title: Cell
  doi: 10.1016/j.cell.2009.06.014
– volume: 183
  start-page: 802
  year: 2020
  end-page: 817
  ident: CR53
  article-title: A structural model of the endogenous human BAF complex informs disease mechanisms
  publication-title: Cell
  doi: 10.1016/j.cell.2020.09.051
– volume: 133
  start-page: 462
  year: 2003
  end-page: 469
  ident: CR67
  article-title: A gateway cloning vector set for high-throughput functional analysis of genes in planta
  publication-title: Plant Physiol.
  doi: 10.1104/pp.103.027979
– volume: 8
  start-page: 1423
  year: 2022
  end-page: 1439
  ident: CR16
  article-title: Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes
  publication-title: Nat. Plants
  doi: 10.1038/s41477-022-01282-z
– volume: 109
  start-page: 3576
  year: 2012
  end-page: 3581
  ident: CR56
  article-title: SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1113409109
– volume: 133
  start-page: 3223
  year: 2006
  ident: CR51
  article-title: A role for chromatin remodeling in regulation of CUC gene expression in the Arabidopsis cotyledon boundary
  publication-title: Development
  doi: 10.1242/dev.02508
– volume: 49
  start-page: 1613
  year: 2017
  end-page: 1623
  ident: CR20
  article-title: SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3958
– volume: 11
  start-page: e1004921
  year: 2015
  ident: CR36
  article-title: The tumor suppressor BCL7B functions in the Wnt signaling pathway
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004921
– volume: 9
  year: 2018
  ident: CR10
  article-title: A non-canonical BRD9-containing BAF chromatin remodeling complex regulates naive pluripotency in mouse embryonic stem cells
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-018-07528-9
– volume: 48
  start-page: 687
  year: 2016
  end-page: 693
  ident: CR31
  article-title: Concerted genomic targeting of H3K27 demethylase REF6 and chromatin-remodeling ATPase BRM in
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3555
– volume: 30
  start-page: 15
  year: 2018
  end-page: 36
  ident: CR61
  article-title: Profiling of accessible chromatin regions across multiple plant species and cell types reveals common gene regulatory principles and new control modules
  publication-title: Plant Cell
  doi: 10.1105/tpc.17.00581
– volume: 22
  start-page: 38
  year: 2021
  end-page: 58
  ident: CR6
  article-title: COMPASS and SWI/SNF complexes in development and disease
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/s41576-020-0278-0
– volume: 118
  start-page: e2107558118
  year: 2021
  ident: CR57
  article-title: Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.2107558118
– volume: 31
  start-page: 2382
  year: 2015
  end-page: 2383
  ident: CR83
  article-title: ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv145
– volume: 54
  start-page: 861
  year: 2022
  end-page: 873
  ident: CR18
  article-title: SMARCE1 deficiency generates a targetable mSWI/SNF dependency in clear cell meningioma
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-022-01077-0
– volume: 45
  start-page: 5061
  year: 2017
  end-page: 5073
  ident: CR76
  article-title: A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx267
– volume: 94
  start-page: 215
  year: 2018
  end-page: 231
  ident: CR60
  article-title: Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks
  publication-title: Plant J
  doi: 10.1111/tpj.13882
– volume: 50
  start-page: 12754
  year: 2022
  end-page: 12767
  ident: CR87
  article-title: Transcription elongator SPT6L regulates the occupancies of the SWI2/SNF2 chromatin remodelers SYD/BRM and nucleosomes at transcription start sites in Arabidopsis
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac1126
– volume: 125
  start-page: 655
  year: 2006
  end-page: 664
  ident: CR23
  article-title: The timing of developmental transitions in plants
  publication-title: Cell
  doi: 10.1016/j.cell.2006.05.005
– volume: 124
  start-page: 645
  year: 1997
  end-page: 654
  ident: CR40
  article-title: Phase change and the regulation of trichome distribution in Arabidopsis thaliana
  publication-title: Development
  doi: 10.1242/dev.124.3.645
– volume: 35
  start-page: 2464
  year: 2023
  end-page: 2483
  ident: CR17
  article-title: Organization, genomic targeting, and assembly of three distinct SWI/SNF chromatin remodeling complexes in Arabidopsis
  publication-title: Plant Cell
  doi: 10.1093/plcell/koad111
– volume: 2
  start-page: e00269
  year: 2013
  ident: CR42
  article-title: Sugar is an endogenous cue for juvenile-to-adult phase transition in plants
  publication-title: Elife
  doi: 10.7554/eLife.00269
– volume: 21
  start-page: 594
  year: 2016
  end-page: 608
  ident: CR8
  article-title: The role of SWI/SNF chromatin remodeling complexes in hormone crosstalk
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2016.01.017
– volume: 11
  start-page: e1004944
  year: 2015
  ident: CR47
  article-title: The Arabidopsis SWI2/SNF2 chromatin remodeler BRAHMA regulates polycomb function during vegetative development and directly activates the flowering repressor gene SVP
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004944
– volume: 5
  start-page: 976
  year: 1994
  end-page: 989
  ident: CR72
  article-title: An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
  publication-title: J. Am. Soc. Mass Spectrom.
  doi: 10.1016/1044-0305(94)80016-2
– volume: 29
  start-page: 890
  year: 2017
  end-page: 911
  ident: CR73
  article-title: TRAF family proteins regulate autophagy dynamics by modulating AUTOPHAGY PROTEIN6 stability in Arabidopsis
  publication-title: Plant Cell
  doi: 10.1105/tpc.17.00056
– volume: 138
  start-page: 4117
  year: 2011
  end-page: 4129
  ident: CR22
  article-title: The control of developmental phase transitions in plants
  publication-title: Development
  doi: 10.1242/dev.063511
– volume: 4
  start-page: 1102
  year: 2018
  end-page: 1111
  ident: CR59
  article-title: Cytokinin modulates context-dependent chromatin accessibility through the type-B response regulators
  publication-title: Nat. Plants
  doi: 10.1038/s41477-018-0290-y
– volume: 44
  start-page: W160
  year: 2016
  end-page: W165
  ident: CR81
  article-title: deepTools2: a next generation web server for deep-sequencing data analysis
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw257
– volume: 83
  start-page: 62
  year: 2015
  end-page: 77
  ident: CR12
  article-title: Roles and activities of chromatin remodeling ATPases in plants
  publication-title: Plant J.
  doi: 10.1111/tpj.12877
– volume: 367
  start-page: 875
  year: 2020
  end-page: 881
  ident: CR54
  article-title: Structure of nucleosome-bound human BAF complex
  publication-title: Science
  doi: 10.1126/science.aaz9761
– volume: 14
  start-page: 372
  year: 2021
  end-page: 383
  ident: CR64
  article-title: Single-nucleus RNA and ATAC sequencing reveals the impact of chromatin accessibility on gene expression in Arabidopsis roots at the single-cell level
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2021.01.001
– volume: 34
  start-page: 503
  year: 2022
  end-page: 513
  ident: CR39
  article-title: Quality control and evaluation of plant epigenomics data
  publication-title: Plant Cell
  doi: 10.1093/plcell/koab255
– volume: 23
  start-page: 341
  year: 2013
  end-page: 351
  ident: CR89
  article-title: DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing
  publication-title: Genome Res.
  doi: 10.1101/gr.142067.112
– volume: 183
  start-page: 802
  year: 2020
  ident: 45250_CR53
  publication-title: Cell
  doi: 10.1016/j.cell.2020.09.051
– volume: 49
  start-page: 1613
  year: 2017
  ident: 45250_CR20
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3958
– volume: 48
  start-page: 687
  year: 2016
  ident: 45250_CR31
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3555
– volume: 38
  start-page: 3022
  year: 2021
  ident: 45250_CR90
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msab120
– volume: 9
  year: 2018
  ident: 45250_CR10
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-018-07528-9
– volume: 138
  start-page: 738
  year: 2009
  ident: 45250_CR28
  publication-title: Cell
  doi: 10.1016/j.cell.2009.06.014
– volume: 5
  start-page: 976
  year: 1994
  ident: 45250_CR72
  publication-title: J. Am. Soc. Mass Spectrom.
  doi: 10.1016/1044-0305(94)80016-2
– ident: 45250_CR88
  doi: 10.1038/ncomms5909
– volume: 12
  start-page: e1006263
  year: 2016
  ident: 45250_CR44
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1006263
– volume: 109
  start-page: 3576
  year: 2012
  ident: 45250_CR56
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1113409109
– volume: 30
  start-page: 15
  year: 2018
  ident: 45250_CR61
  publication-title: Plant Cell
  doi: 10.1105/tpc.17.00581
– volume: 45
  start-page: e41
  year: 2017
  ident: 45250_CR65
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkw1179
– volume: 6
  start-page: 996
  year: 2020
  ident: 45250_CR14
  publication-title: Nat. Plants
  doi: 10.1038/s41477-020-0734-z
– volume: 31
  start-page: 2382
  year: 2015
  ident: 45250_CR83
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv145
– volume: 481
  start-page: 389
  year: 2012
  ident: 45250_CR84
  publication-title: Nature
  doi: 10.1038/nature10730
– volume: 28
  start-page: 28
  year: 2016
  ident: 45250_CR50
  publication-title: Plant Cell
  doi: 10.1105/tpc.15.00854
– volume: 53
  start-page: 279
  year: 2021
  ident: 45250_CR3
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-020-00768-w
– volume: 2
  start-page: 1565
  year: 2007
  ident: 45250_CR85
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2007.199
– volume: 12
  start-page: 85
  year: 2002
  ident: 45250_CR49
  publication-title: Curr. Biol.
  doi: 10.1016/S0960-9822(01)00651-0
– volume: 124
  start-page: 645
  year: 1997
  ident: 45250_CR40
  publication-title: Development
  doi: 10.1242/dev.124.3.645
– volume: 44
  start-page: W160
  year: 2016
  ident: 45250_CR81
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkw257
– volume: 463
  start-page: 474
  year: 2010
  ident: 45250_CR7
  publication-title: Nature
  doi: 10.1038/nature08911
– volume: 133
  start-page: 3539
  year: 2006
  ident: 45250_CR24
  publication-title: Development
  doi: 10.1242/dev.02521
– volume: 131
  start-page: 4965
  year: 2004
  ident: 45250_CR46
  publication-title: Development
  doi: 10.1242/dev.01363
– volume: 27
  start-page: 1
  year: 2015
  ident: 45250_CR26
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/j.pbi.2015.05.009
– volume: 14
  start-page: 888
  year: 2021
  ident: 45250_CR15
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2021.03.018
– volume: 49
  start-page: 296
  year: 2017
  ident: 45250_CR19
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3744
– volume: 133
  start-page: 3223
  year: 2006
  ident: 45250_CR51
  publication-title: Development
  doi: 10.1242/dev.02508
– volume: 45
  start-page: 5061
  year: 2017
  ident: 45250_CR76
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx267
– volume: 27
  start-page: 1670
  year: 2015
  ident: 45250_CR48
  publication-title: Plant Cell
  doi: 10.1105/tpc.15.00091
– volume: 138
  start-page: 4117
  year: 2011
  ident: 45250_CR22
  publication-title: Development
  doi: 10.1242/dev.063511
– volume: 50
  start-page: 10399
  year: 2022
  ident: 45250_CR32
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac826
– volume: 29
  start-page: 24
  year: 2011
  ident: 45250_CR82
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1754
– volume: 9
  start-page: 357
  year: 2012
  ident: 45250_CR79
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.1923
– volume: 5
  start-page: 549
  year: 2022
  ident: 45250_CR33
  publication-title: Commun. Biol.
  doi: 10.1038/s42003-022-03490-x
– volume: 118
  start-page: e2107558118
  year: 2021
  ident: 45250_CR57
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.2107558118
– volume: 138
  start-page: 750
  year: 2009
  ident: 45250_CR29
  publication-title: Cell
  doi: 10.1016/j.cell.2009.06.031
– volume: 15
  year: 2014
  ident: 45250_CR77
  publication-title: Genome Biol
  doi: 10.1186/s13059-014-0550-8
– volume: 186
  start-page: 5290
  year: 2023
  ident: 45250_CR9
  publication-title: Cell
  doi: 10.1016/j.cell.2023.10.006
– volume: 39
  start-page: 1033
  year: 2007
  ident: 45250_CR45
  publication-title: Nat. Genet.
  doi: 10.1038/ng2079
– volume: 133
  start-page: 462
  year: 2003
  ident: 45250_CR67
  publication-title: Plant Physiol.
  doi: 10.1104/pp.103.027979
– volume: 10
  start-page: e61894
  year: 2021
  ident: 45250_CR58
  publication-title: Elife
  doi: 10.7554/eLife.61894
– volume: 11
  start-page: e1004944
  year: 2015
  ident: 45250_CR47
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004944
– volume: 22
  start-page: 1090
  year: 2018
  ident: 45250_CR37
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2017.12.099
– volume: 34
  start-page: 374
  year: 2003
  ident: 45250_CR78
  publication-title: Biotechniques
  doi: 10.2144/03342mt01
– volume: 32
  start-page: 3290
  year: 2020
  ident: 45250_CR69
  publication-title: Plant Cell
  doi: 10.1105/tpc.20.00267
– volume: 14
  start-page: e1007337
  year: 2018
  ident: 45250_CR27
  publication-title: PLoS Genet
  doi: 10.1371/journal.pgen.1007337
– volume: 54
  start-page: 742
  year: 2020
  ident: 45250_CR52
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2020.07.003
– volume: 35
  start-page: 2464
  year: 2023
  ident: 45250_CR17
  publication-title: Plant Cell
  doi: 10.1093/plcell/koad111
– volume: 78
  start-page: 706
  year: 2014
  ident: 45250_CR86
  publication-title: Plant J.
  doi: 10.1111/tpj.12499
– volume: 53
  start-page: 269
  year: 2021
  ident: 45250_CR2
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-021-00777-3
– volume: 78
  start-page: 273
  year: 2009
  ident: 45250_CR5
  publication-title: Annu. Rev. Biochem.
  doi: 10.1146/annurev.biochem.77.062706.153223
– volume: 118
  start-page: e2115667118
  year: 2021
  ident: 45250_CR55
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.2115667118
– volume: 12
  year: 2021
  ident: 45250_CR63
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-22352-4
– volume: 14
  start-page: 372
  year: 2021
  ident: 45250_CR64
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2021.01.001
– volume: 19
  start-page: 374
  year: 2009
  ident: 45250_CR25
  publication-title: Curr. Opin. Genet. Dev.
  doi: 10.1016/j.gde.2009.06.001
– volume: 16
  start-page: 735
  year: 1998
  ident: 45250_CR68
  publication-title: Plant J.
  doi: 10.1046/j.1365-313x.1998.00343.x
– volume: 34
  start-page: 503
  year: 2022
  ident: 45250_CR39
  publication-title: Plant Cell
  doi: 10.1093/plcell/koab255
– volume: 45
  start-page: 592
  year: 2013
  ident: 45250_CR34
  publication-title: Nat. Genet.
  doi: 10.1038/ng.2628
– volume: 54
  start-page: 861
  year: 2022
  ident: 45250_CR18
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-022-01077-0
– volume: 18
  start-page: 407
  year: 2017
  ident: 45250_CR4
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/nrm.2017.26
– volume: 21
  start-page: 594
  year: 2016
  ident: 45250_CR8
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2016.01.017
– volume: 57
  start-page: 526
  year: 2022
  ident: 45250_CR66
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2021.12.019
– volume: 47
  start-page: W256
  year: 2019
  ident: 45250_CR91
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkz239
– volume: 10
  year: 2019
  ident: 45250_CR21
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-09891-7
– volume: 8
  start-page: 257
  year: 2022
  ident: 45250_CR30
  publication-title: Nat. Plants
  doi: 10.1038/s41477-022-01110-4
– volume: 2
  start-page: e00269
  year: 2013
  ident: 45250_CR42
  publication-title: Elife
  doi: 10.7554/eLife.00269
– volume: 125
  start-page: 655
  year: 2006
  ident: 45250_CR23
  publication-title: Cell
  doi: 10.1016/j.cell.2006.05.005
– volume: 23
  start-page: 341
  year: 2013
  ident: 45250_CR89
  publication-title: Genome Res.
  doi: 10.1101/gr.142067.112
– volume: 26
  start-page: 744
  year: 2019
  ident: 45250_CR38
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/s41594-019-0273-3
– volume: 2
  start-page: e00260
  year: 2013
  ident: 45250_CR43
  publication-title: Elife
  doi: 10.7554/eLife.00260
– volume: 22
  start-page: 38
  year: 2021
  ident: 45250_CR6
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/s41576-020-0278-0
– volume: 64
  start-page: 499
  year: 2022
  ident: 45250_CR13
  publication-title: J. Integr. Plant Biol.
  doi: 10.1111/jipb.13208
– volume: 94
  start-page: 215
  year: 2018
  ident: 45250_CR60
  publication-title: Plant J
  doi: 10.1111/tpj.13882
– volume: 83
  start-page: 62
  year: 2015
  ident: 45250_CR12
  publication-title: Plant J.
  doi: 10.1111/tpj.12877
– volume: 172
  start-page: 2416
  year: 2016
  ident: 45250_CR41
  publication-title: Plant Physiol.
  doi: 10.1104/pp.16.01588
– volume: 20
  start-page: 207
  year: 2019
  ident: 45250_CR1
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/s41576-018-0089-8
– volume: 50
  start-page: 12754
  year: 2022
  ident: 45250_CR87
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkac1126
– volume: 175
  start-page: 1272
  year: 2018
  ident: 45250_CR11
  publication-title: Cell
  doi: 10.1016/j.cell.2018.09.032
– volume: 7
  start-page: 1728
  year: 2012
  ident: 45250_CR80
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2012.101
– volume: 34
  start-page: 2722
  year: 2020
  ident: 45250_CR35
  publication-title: Leukemia
  doi: 10.1038/s41375-020-0919-5
– volume: 11
  start-page: e1004921
  year: 2015
  ident: 45250_CR36
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004921
– volume: 367
  start-page: 875
  year: 2020
  ident: 45250_CR54
  publication-title: Science
  doi: 10.1126/science.aaz9761
– volume: 61
  start-page: 259
  year: 2010
  ident: 45250_CR70
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2009.04048.x
– volume: 29
  start-page: 890
  year: 2017
  ident: 45250_CR73
  publication-title: Plant Cell
  doi: 10.1105/tpc.17.00056
– volume: 3
  year: 2007
  ident: 45250_CR74
  publication-title: Plant Methods
  doi: 10.1186/1746-4811-3-12
– volume: 8
  start-page: 1423
  year: 2022
  ident: 45250_CR16
  publication-title: Nat. Plants
  doi: 10.1038/s41477-022-01282-z
– volume: 4
  start-page: 1102
  year: 2018
  ident: 45250_CR59
  publication-title: Nat. Plants
  doi: 10.1038/s41477-018-0290-y
– volume: 33
  start-page: 475
  year: 2021
  ident: 45250_CR62
  publication-title: Plant Cell
  doi: 10.1093/plcell/koaa043
– volume: 1
  start-page: 2019
  year: 2006
  ident: 45250_CR71
  publication-title: Nat. Protoc.
  doi: 10.1038/nprot.2006.286
– volume: 14
  start-page: 417
  year: 2017
  ident: 45250_CR75
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4197
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Snippet Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin...
Abstract Switch defective/sucrose non-fermentable (SWI/SNF) chromatin remodeling complexes are multi-subunit machineries that establish and maintain chromatin...
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Accessibility
B-cell lymphoma
Chromatin remodeling
Eukaryotes
Gene expression
Genomes
Genomics
Humanities and Social Sciences
Leukemia
Lymphocytes B
Lymphoma
miRNA
multidisciplinary
Phase transitions
Plants (botany)
Science
Science (multidisciplinary)
Sucrose
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Title BCL7A and BCL7B potentiate SWI/SNF-complex-mediated chromatin accessibility to regulate gene expression and vegetative phase transition in plants
URI https://link.springer.com/article/10.1038/s41467-024-45250-x
https://www.ncbi.nlm.nih.gov/pubmed/38296999
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Volume 15
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