The Litsea genome and the evolution of the laurel family

The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other...

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Published inNature communications Vol. 11; no. 1; pp. 1675 - 14
Main Authors Chen, Yi-Cun, Li, Zhen, Zhao, Yun-Xiao, Gao, Ming, Wang, Jie-Yu, Liu, Ke-Wei, Wang, Xue, Wu, Li-Wen, Jiao, Yu-Lian, Xu, Zi-Long, He, Wen-Guang, Zhang, Qi-Yan, Liang, Chieh-Kai, Hsiao, Yu-Yun, Zhang, Di-Yang, Lan, Si-Ren, Huang, Laiqiang, Xu, Wei, Tsai, Wen-Chieh, Liu, Zhong-Jian, Van de Peer, Yves, Wang, Yang-Dong
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 03.04.2020
Nature Publishing Group
Nature Portfolio
Subjects
45/23
631/181/2474
631/208/212/2304
631/449/2491/2174
Biological evolution
Biosynthetic Pathways - genetics
Chromosomes
Chromosomes, Plant - genetics
Discordance
Divergence
DNA, Plant - genetics
DNA, Plant - isolation & purification
Essential oils
Evolution
Evolution, Molecular
Gene Duplication
Gene Expression Profiling
Genetic Speciation
Genome, Plant
Genomes
Genomics
Humanities and Social Sciences
Inflorescence - genetics
Lauraceae
Litsea - genetics
Litsea - metabolism
Litsea cubeba
Magnoliales
Molecular Sequence Annotation
multidisciplinary
Odorants
Phylogenetics
Phylogeny
Plant Proteins - genetics
Plant Proteins - metabolism
Scents
Science
Science (multidisciplinary)
Sequence Analysis, DNA
Sex differentiation
Volatile compounds
Online AccessGet full text
ISSN2041-1723
2041-1723
DOI10.1038/s41467-020-15493-5

Cover

Abstract The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA , a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents. Litsea cubeba belongs to the Lauraceae family within the Magnoliids clade. Here, the authors assemble its genome and reveal divergence of inflorescence and sexual differentiation, the phylogenetic relationships across the Lauraceae and related species, and biosynthetic genes related to essential oil synthesis.
AbstractList The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA , a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.
The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.Litsea cubeba belongs to the Lauraceae family within the Magnoliids clade. Here, the authors assemble its genome and reveal divergence of inflorescence and sexual differentiation, the phylogenetic relationships across the Lauraceae and related species, and biosynthetic genes related to essential oil synthesis.
The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.
Litsea cubeba belongs to the Lauraceae family within the Magnoliids clade. Here, the authors assemble its genome and reveal divergence of inflorescence and sexual differentiation, the phylogenetic relationships across the Lauraceae and related species, and biosynthetic genes related to essential oil synthesis.
The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA, a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents.
The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here, we present a chromosome-level assembly of the Litsea cubeba genome, together with low-coverage genomic and transcriptomic data for many other Lauraceae. Phylogenomic analyses show phylogenetic discordance at the position of Magnoliids, suggesting incomplete lineage sorting during the divergence of monocots, eudicots, and Magnoliids. An ancient whole-genome duplication (WGD) event occurred just before the divergence of Laurales and Magnoliales; subsequently, independent WGDs occurred almost simultaneously in the three Lauralean lineages. The phylogenetic relationships within Lauraceae correspond to the divergence of inflorescences, as evidenced by the phylogeny of FUWA , a conserved gene involved in determining panicle architecture in Lauraceae. Monoterpene synthases responsible for production of specific volatile compounds in Lauraceae are functionally verified. Our work sheds light on the evolution of the Lauraceae, the genetic basis for floral evolution and specific scents. Litsea cubeba belongs to the Lauraceae family within the Magnoliids clade. Here, the authors assemble its genome and reveal divergence of inflorescence and sexual differentiation, the phylogenetic relationships across the Lauraceae and related species, and biosynthetic genes related to essential oil synthesis.
ArticleNumber 1675
Author Liu, Zhong-Jian
Li, Zhen
Gao, Ming
Huang, Laiqiang
Wu, Li-Wen
Van de Peer, Yves
Lan, Si-Ren
Wang, Jie-Yu
Xu, Wei
Jiao, Yu-Lian
Liang, Chieh-Kai
Tsai, Wen-Chieh
Wang, Xue
Liu, Ke-Wei
He, Wen-Guang
Hsiao, Yu-Yun
Zhang, Qi-Yan
Xu, Zi-Long
Zhang, Di-Yang
Wang, Yang-Dong
Chen, Yi-Cun
Zhao, Yun-Xiao
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  surname: Wang
  fullname: Wang, Jie-Yu
  organization: Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, College of Forestry and Landscape Architecture, South China Agricultural University
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/32245969$$D View this record in MEDLINE/PubMed
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SSID ssj0000391844
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Snippet The laurel family within the Magnoliids has attracted attentions owing to its scents, variable inflorescences, and controversial phylogenetic position. Here,...
Litsea cubeba belongs to the Lauraceae family within the Magnoliids clade. Here, the authors assemble its genome and reveal divergence of inflorescence and...
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pubmedcentral
proquest
pubmed
crossref
springer
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 1675
SubjectTerms 45/23
631/181/2474
631/208/212/2304
631/449/2491/2174
Biological evolution
Biosynthetic Pathways - genetics
Chromosomes
Chromosomes, Plant - genetics
Discordance
Divergence
DNA, Plant - genetics
DNA, Plant - isolation & purification
Essential oils
Evolution
Evolution, Molecular
Gene Duplication
Gene Expression Profiling
Genetic Speciation
Genome, Plant
Genomes
Genomics
Humanities and Social Sciences
Inflorescence - genetics
Lauraceae
Litsea - genetics
Litsea - metabolism
Litsea cubeba
Magnoliales
Molecular Sequence Annotation
multidisciplinary
Odorants
Phylogenetics
Phylogeny
Plant Proteins - genetics
Plant Proteins - metabolism
Scents
Science
Science (multidisciplinary)
Sequence Analysis, DNA
Sex differentiation
Volatile compounds
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Title The Litsea genome and the evolution of the laurel family
URI https://link.springer.com/article/10.1038/s41467-020-15493-5
https://www.ncbi.nlm.nih.gov/pubmed/32245969
https://www.proquest.com/docview/2386357144
https://www.proquest.com/docview/2386292509
https://pubmed.ncbi.nlm.nih.gov/PMC7125107
https://doaj.org/article/74c73a3781724383aeaded993712d602
Volume 11
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