lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA

Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-fri...

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Published inScientific data Vol. 7; no. 1; p. 326
Main Authors Seifuddin, Fayaz, Singh, Komudi, Suresh, Abhilash, Judy, Jennifer T., Chen, Yun-Ching, Chaitankar, Vijender, Tunc, Ilker, Ruan, Xiangbo, Li, Ping, Chen, Yi, Cao, Haiming, Lee, Richard S., Goes, Fernando S., Zandi, Peter P., Jafri, M. Saleet, Pirooznia, Mehdi
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 05.10.2020
Nature Publishing Group
Subjects
631/114/129/2043
631/114/1314
631/114/2401
631/114/2404
Computer applications
Data Descriptor
Digital curation
Gene expression
Genomes
Genotypes
Humanities and Social Sciences
Humans
Knowledge Bases
Molecular Sequence Annotation
multidisciplinary
Non-coding RNA
Nucleotide sequence
Organ Specificity
Phylogeny
Quantitative Trait Loci
RNA, Long Noncoding - genetics
Science
Science (multidisciplinary)
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Abstract Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci ( cis -eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/ , and the data are freely available through Open Science Framework ( https://doi.org/10.17605/OSF.IO/RU4D2 ). Measurement(s) regulation of gene expression • sequence feature annotation • lnc_RNA • tissue-specific expression of lncRNA • Expression Quantitative Trait Locus Technology Type(s) digital curation • computational modeling technique Sample Characteristic - Organism Homo sapiens Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12827597
AbstractList Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci (cis-eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/, and the data are freely available through Open Science Framework (10.17605/OSF.IO/RU4D2).Measurement(s)regulation of gene expression • sequence feature annotation • lnc_RNA • tissue-specific expression of lncRNA • Expression Quantitative Trait LocusTechnology Type(s)digital curation • computational modeling techniqueSample Characteristic - OrganismHomo sapiensMachine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12827597
Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci ( cis -eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/ , and the data are freely available through Open Science Framework ( https://doi.org/10.17605/OSF.IO/RU4D2 ).
Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci (cis-eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/ , and the data are freely available through Open Science Framework ( https://doi.org/10.17605/OSF.IO/RU4D2 ).
Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci ( cis -eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/ , and the data are freely available through Open Science Framework (10.17605/OSF.IO/RU4D2). Measurement(s) regulation of gene expression • sequence feature annotation • lnc_RNA • tissue-specific expression of lncRNA • Expression Quantitative Trait Locus Technology Type(s) digital curation • computational modeling technique Sample Characteristic - Organism Homo sapiens Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.12827597
Long non-coding RNA Knowledgebase (lncRNAKB) is an integrated resource for exploring lncRNA biology in the context of tissue-specificity and disease association. A systematic integration of annotations from six independent databases resulted in 77,199 human lncRNA (224,286 transcripts). The user-friendly knowledgebase covers a comprehensive breadth and depth of lncRNA annotation. lncRNAKB is a compendium of expression patterns, derived from analysis of RNA-seq data in thousands of samples across 31 solid human normal tissues (GTEx). Thousands of co-expression modules identified via network analysis and pathway enrichment to delineate lncRNA function are also accessible. Millions of expression quantitative trait loci ( cis -eQTL) computed using whole genome sequence genotype data (GTEx) can be downloaded at lncRNAKB that also includes tissue-specificity, phylogenetic conservation and coding potential scores. Tissue-specific lncRNA-trait associations encompassing 323 GWAS (UK Biobank) are also provided. LncRNAKB is accessible at http://www.lncrnakb.org/ , and the data are freely available through Open Science Framework ( https://doi.org/10.17605/OSF.IO/RU4D2 ). Measurement(s) regulation of gene expression • sequence feature annotation • lnc_RNA • tissue-specific expression of lncRNA • Expression Quantitative Trait Locus Technology Type(s) digital curation • computational modeling technique Sample Characteristic - Organism Homo sapiens Machine-accessible metadata file describing the reported data: https://doi.org/10.6084/m9.figshare.12827597
ArticleNumber 326
Author Chen, Yi
Singh, Komudi
Suresh, Abhilash
Li, Ping
Judy, Jennifer T.
Lee, Richard S.
Jafri, M. Saleet
Cao, Haiming
Pirooznia, Mehdi
Ruan, Xiangbo
Chaitankar, Vijender
Zandi, Peter P.
Goes, Fernando S.
Chen, Yun-Ching
Tunc, Ilker
Seifuddin, Fayaz
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Cites_doi 10.1038/75556
10.1038/nature24277
10.1101/gr.132159.111
10.1038/nprot.2012.016
10.1038/ng1847
10.1126/science.1231776
10.1016/j.bbagrm.2015.07.017
10.1093/nar/gkv1270
10.6084/M9.FIGSHARE.12563864.V3
10.1093/nar/gku1167
10.1186/gb-2014-15-2-r29
10.1007/s00018-017-2737-0
10.1101/gr.1239303
10.1093/nar/gky905
10.1186/s13059-018-1590-2
10.1186/1471-2164-11-305
10.1089/omi.2011.0118
10.1093/nar/gkv007
10.1093/nar/gkp943
10.1007/s12064-012-0162-3
10.1093/bioinformatics/btw044
10.1093/bioinformatics/btv722
10.1111/1467-9868.00346
10.18632/oncotarget.6859
10.1093/nar/gky955
10.1038/nature07672
10.1093/nar/gky960
10.7554/eLife.08890
10.1093/bioinformatics/btu170
10.1186/s12859-017-1890-7
10.1093/bioinformatics/btp616
10.1038/nmeth.4197
10.1101/gr.214288.116
10.1093/bib/bbq072
10.1093/nar/gku1060
10.17605/OSF.IO/RU4D2
10.1093/bioinformatics/btu056
10.1186/1471-2105-9-559
10.1101/gr.3715005
10.1093/nar/gku1179
10.1093/nar/gkx1020
10.1038/s41586-018-0579-z
10.1038/nprot.2011.457
10.1016/j.celrep.2015.04.023
10.1038/nature21374
10.1038/nmeth.3317
10.1038/ng.3538
10.1186/s12859-018-2053-1
10.1016/j.cell.2018.01.011
10.1186/s13742-015-0047-8
10.1101/gr.1933104
10.1093/bioinformatics/btr330
10.1101/gad.17446611
10.1371/journal.pgen.0020190
10.1093/nar/gks915
10.1093/nar/30.1.38
10.1186/gb-2010-11-3-r25
10.1093/nar/29.1.308
10.1038/nature13182
10.1038/nrg3520
10.1093/nar/gkv1189
10.1093/bioinformatics/btt656
10.1101/gr.3577405
10.1093/bioinformatics/btq671
10.1093/nar/gkq1138
10.1023/A:1010933404324
10.1093/nar/gkx1107
10.1371/journal.pone.0108010
10.1016/j.cell.2009.02.006
10.1038/ng.3192
10.1093/nar/gky1206
10.1093/nar/gky1055
10.1261/rna.044040.113
10.1038/nbt.3122
10.1016/S1365-6937(15)30249-5
10.1093/database/bat034
10.1086/519795
10.1038/s41576-018-0017-y
10.1101/005165
10.1007/978-1-4419-9863-7_1215
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PublicationDate 2020-10-05
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  day: 05
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PublicationTitle Scientific data
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References Liao, Smyth, Shi (CR48) 2014; 30
Zhu (CR43) 2016; 48
O’Leary (CR31) 2016; 44
Sherry (CR59) 2001; 29
(CR74) 2019; 47
Lee (CR1) 2012; 338
Chang (CR55) 2015; 4
Patterson, Price, Reich (CR60) 2006; 2
Li (CR66) 2011; 27
CR33
Jolliffe, Cadima (CR52) 2016; 374
Ashburner (CR73) 2000; 25
Pirooznia (CR78) 2020
Ritchie (CR62) 2015; 43
Robinson, McCarthy, Smyth (CR61) 2010; 26
Blanchette (CR84) 2004; 14
Cabili (CR6) 2011; 25
CR70
(CR75) 2015; 43
Volders (CR20) 2013; 41
Hubisz, Pollard, Siepel (CR83) 2011; 12
Volders (CR19) 2015; 43
CR4
(CR22) 2014; 507
Hezroni (CR5) 2015; 11
Jiang (CR9) 2016; 7
Housman, Ulitsky (CR10) 2016; 1859
Pirooznia (CR44) 2020
Russo (CR71) 2018; 19
Trapnell (CR37) 2012; 7
Wagner, Kin, Lynch (CR50) 2012; 131
Chakraborty, Deb, Maji, Saha, Ghosh (CR32) 2014; 9
Kopp, Mendell (CR3) 2018; 172
Hubbard (CR30) 2002; 30
CR45
Stegle, Parts, Piipari, Winn, Durbin (CR67) 2012; 7
Yang, Shao, Zhou, Chen, Qu (CR23) 2010; 38
Russ, Futschik (CR54) 2010; 11
Storey (CR76) 2002; 64
Bycroft (CR42) 2018; 562
CR85
Fritah, Niclou, Azuaje (CR15) 2014; 20
Price (CR51) 2006; 38
(CR28) 2019; 47
(CR39) 2017; 550
Bao (CR86) 2019; 47
Law, Chen, Shi, Smyth (CR63) 2014; 15
Danecek (CR57) 2011; 27
Ponting, Oliver, Reik (CR2) 2009; 136
Ji, Song, Regev, Struhl (CR12) 2015; 4
Frankish (CR34) 2019; 47
Yu, Wang, Han, He (CR72) 2012; 16
Patro, Duggal, Love, Irizarry, Kingsford (CR49) 2017; 14
Kim, Langmead, Salzberg (CR47) 2015; 12
You, Yoon, Nam (CR26) 2017; 27
CR13
Kryuchkova-Mostacci, Robinson-Rechavi (CR53) 2017; 18
CR56
Breiman (CR79) 2001; 45
Fang (CR21) 2018; 46
Man, Barnett, Christoffels (CR87) 2018; 75
Pertea (CR18) 2018; 19
Wucher (CR40) 2017; 45
Ma (CR27) 2019; 47
Li, Yang (CR8) 2017; 18
Amaral, Clark, Gascoigne, Dinger, Mattick (CR17) 2011; 39
Ongen, Buil, Brown, Dermitzakis, Delaneau (CR68) 2016; 32
Xu (CR14) 2017; 18
Hon (CR35) 2017; 543
Paraskevopoulou (CR16) 2016; 44
Derrien (CR29) 2012; 22
Guttman (CR7) 2009; 458
Pohl, Beato (CR80) 2014; 30
Narasimhan (CR58) 2016; 32
Ma (CR24) 2015; 43
CR69
Andrews, Rothnagel (CR11) 2014; 15
CR64
Pertea (CR36) 2015; 33
Iyer (CR25) 2015; 47
Casper (CR38) 2018; 46
Bolger, Lohse, Usadel (CR46) 2014; 30
Shannon (CR77) 2003; 13
Langfelder, Horvath (CR41) 2008; 9
Robinson, Oshlack (CR65) 2010; 11
Siepel (CR81) 2005; 15
Cooper (CR82) 2005; 15
J-H Yang (659_CR23) 2010; 38
JT Lee (659_CR1) 2012; 338
R Patro (659_CR49) 2017; 14
Z Zhu (659_CR43) 2016; 48
O Stegle (659_CR67) 2012; 7
659_CR70
C Trapnell (659_CR37) 2012; 7
S Chakraborty (659_CR32) 2014; 9
C Bycroft (659_CR42) 2018; 562
FANTOM Consortium and the RIKEN PMI and CLST (DGT) (659_CR22) 2014; 507
MK Iyer (659_CR25) 2015; 47
L Ma (659_CR24) 2015; 43
N Patterson (659_CR60) 2006; 2
Y Liao (659_CR48) 2014; 30
MD Robinson (659_CR61) 2010; 26
J Man (659_CR87) 2018; 75
659_CR4
GP Wagner (659_CR50) 2012; 131
GM Cooper (659_CR82) 2005; 15
H Li (659_CR66) 2011; 27
G Housman (659_CR10) 2016; 1859
P-J Volders (659_CR19) 2015; 43
ME Ritchie (659_CR62) 2015; 43
P Langfelder (659_CR41) 2008; 9
S Fritah (659_CR15) 2014; 20
Gene Ontology Consortium (659_CR75) 2015; 43
L Breiman (659_CR79) 2001; 45
J Russ (659_CR54) 2010; 11
M Ashburner (659_CR73) 2000; 25
659_CR33
GTEx Consortium (659_CR39) 2017; 550
V Wucher (659_CR40) 2017; 45
A Pohl (659_CR80) 2014; 30
D Kim (659_CR47) 2015; 12
MN Cabili (659_CR6) 2011; 25
M Blanchette (659_CR84) 2004; 14
A Frankish (659_CR34) 2019; 47
C-C Hon (659_CR35) 2017; 543
V Narasimhan (659_CR58) 2016; 32
The Gene Ontology Consortium (659_CR74) 2019; 47
A Siepel (659_CR81) 2005; 15
D Li (659_CR8) 2017; 18
P-J Volders (659_CR20) 2013; 41
F Kopp (659_CR3) 2018; 172
CW Law (659_CR63) 2014; 15
659_CR85
L Ma (659_CR27) 2019; 47
MD Robinson (659_CR65) 2010; 11
659_CR45
B-H You (659_CR26) 2017; 27
Z Bao (659_CR86) 2019; 47
P Shannon (659_CR77) 2003; 13
M Pirooznia (659_CR78) 2020
CC Chang (659_CR55) 2015; 4
MD Paraskevopoulou (659_CR16) 2016; 44
SJ Andrews (659_CR11) 2014; 15
PP Amaral (659_CR17) 2011; 39
T Hubbard (659_CR30) 2002; 30
C Jiang (659_CR9) 2016; 7
S Fang (659_CR21) 2018; 46
PST Russo (659_CR71) 2018; 19
IT Jolliffe (659_CR52) 2016; 374
659_CR56
ST Sherry (659_CR59) 2001; 29
659_CR13
J Xu (659_CR14) 2017; 18
The RNAcentral Consortium (659_CR28) 2019; 47
M Pirooznia (659_CR44) 2020
MJ Hubisz (659_CR83) 2011; 12
J Casper (659_CR38) 2018; 46
M Guttman (659_CR7) 2009; 458
AL Price (659_CR51) 2006; 38
Z Ji (659_CR12) 2015; 4
T Derrien (659_CR29) 2012; 22
H Hezroni (659_CR5) 2015; 11
M Pertea (659_CR18) 2018; 19
H Ongen (659_CR68) 2016; 32
M Pertea (659_CR36) 2015; 33
G Yu (659_CR72) 2012; 16
JD Storey (659_CR76) 2002; 64
AM Bolger (659_CR46) 2014; 30
CP Ponting (659_CR2) 2009; 136
NA O’Leary (659_CR31) 2016; 44
P Danecek (659_CR57) 2011; 27
659_CR64
N Kryuchkova-Mostacci (659_CR53) 2017; 18
659_CR69
References_xml – ident: CR45
– ident: CR70
– volume: 25
  start-page: 25
  year: 2000
  end-page: 29
  ident: CR73
  article-title: Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
  publication-title: Nat. Genet.
  doi: 10.1038/75556
  contributor:
    fullname: Ashburner
– volume: 550
  start-page: 204
  year: 2017
  end-page: 213
  ident: CR39
  article-title: Genetic effects on gene expression across human tissues
  publication-title: Nature
  doi: 10.1038/nature24277
– volume: 22
  start-page: 1775
  year: 2012
  end-page: 1789
  ident: CR29
  article-title: The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
  publication-title: Genome Res.
  doi: 10.1101/gr.132159.111
  contributor:
    fullname: Derrien
– volume: 7
  start-page: 562
  year: 2012
  end-page: 578
  ident: CR37
  article-title: Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
  publication-title: Nat Protoc
  doi: 10.1038/nprot.2012.016
  contributor:
    fullname: Trapnell
– volume: 38
  start-page: 904
  year: 2006
  end-page: 909
  ident: CR51
  article-title: Principal components analysis corrects for stratification in genome-wide association studies
  publication-title: Nat. Genet.
  doi: 10.1038/ng1847
  contributor:
    fullname: Price
– volume: 338
  start-page: 1435
  year: 2012
  end-page: 1439
  ident: CR1
  article-title: Epigenetic regulation by long noncoding RNAs
  publication-title: Science
  doi: 10.1126/science.1231776
  contributor:
    fullname: Lee
– ident: CR4
– volume: 1859
  start-page: 31
  year: 2016
  end-page: 40
  ident: CR10
  article-title: Methods for distinguishing between protein-coding and long noncoding RNAs and the elusive biological purpose of translation of long noncoding RNAs
  publication-title: Biochim. Biophys. Acta
  doi: 10.1016/j.bbagrm.2015.07.017
  contributor:
    fullname: Ulitsky
– volume: 44
  start-page: D231
  year: 2016
  end-page: 238
  ident: CR16
  article-title: DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1270
  contributor:
    fullname: Paraskevopoulou
– year: 2020
  ident: CR78
  publication-title: figshare
  doi: 10.6084/M9.FIGSHARE.12563864.V3
  contributor:
    fullname: Pirooznia
– volume: 43
  start-page: D187
  year: 2015
  end-page: 192
  ident: CR24
  article-title: LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1167
  contributor:
    fullname: Ma
– volume: 15
  year: 2014
  ident: CR63
  article-title: voom: precision weights unlock linear model analysis tools for RNA-seq read counts
  publication-title: Genome Biology
  doi: 10.1186/gb-2014-15-2-r29
  contributor:
    fullname: Smyth
– volume: 75
  start-page: 1435
  year: 2018
  end-page: 1444
  ident: CR87
  article-title: Structure and function of the Nppa-Nppb cluster locus during heart development and disease
  publication-title: Cell. Mol. Life Sci.
  doi: 10.1007/s00018-017-2737-0
  contributor:
    fullname: Christoffels
– volume: 374
  start-page: 20150202
  year: 2016
  ident: CR52
  article-title: Principal component analysis: a review and recent developments
  publication-title: Philos Trans A Math Phys Eng Sci
  contributor:
    fullname: Cadima
– volume: 13
  start-page: 2498
  year: 2003
  end-page: 2504
  ident: CR77
  article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res.
  doi: 10.1101/gr.1239303
  contributor:
    fullname: Shannon
– volume: 47
  start-page: D1034
  year: 2019
  end-page: D1037
  ident: CR86
  article-title: LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky905
  contributor:
    fullname: Bao
– volume: 19
  year: 2018
  ident: CR18
  article-title: CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise
  publication-title: Genome Biol.
  doi: 10.1186/s13059-018-1590-2
  contributor:
    fullname: Pertea
– volume: 11
  year: 2010
  ident: CR54
  article-title: Comparison and consolidation of microarray data sets of human tissue expression
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-11-305
  contributor:
    fullname: Futschik
– volume: 16
  start-page: 284
  year: 2012
  end-page: 287
  ident: CR72
  article-title: clusterProfiler: an R package for comparing biological themes among gene clusters
  publication-title: OMICS
  doi: 10.1089/omi.2011.0118
  contributor:
    fullname: He
– volume: 43
  start-page: e47
  year: 2015
  ident: CR62
  article-title: limma powers differential expression analyses for RNA-sequencing and microarray studies
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv007
  contributor:
    fullname: Ritchie
– volume: 38
  start-page: D123
  year: 2010
  end-page: 130
  ident: CR23
  article-title: deepBase: a database for deeply annotating and mining deep sequencing data
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkp943
  contributor:
    fullname: Qu
– volume: 131
  start-page: 281
  year: 2012
  end-page: 285
  ident: CR50
  article-title: Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples
  publication-title: Theory Biosci.
  doi: 10.1007/s12064-012-0162-3
  contributor:
    fullname: Lynch
– volume: 32
  start-page: 1749
  year: 2016
  end-page: 1751
  ident: CR58
  article-title: BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btw044
  contributor:
    fullname: Narasimhan
– volume: 45
  start-page: e57
  year: 2017
  ident: CR40
  article-title: FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome
  publication-title: Nucleic Acids Res.
  contributor:
    fullname: Wucher
– volume: 32
  start-page: 1479
  year: 2016
  end-page: 1485
  ident: CR68
  article-title: Fast and efficient QTL mapper for thousands of molecular phenotypes
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv722
  contributor:
    fullname: Delaneau
– volume: 64
  start-page: 479
  year: 2002
  end-page: 498
  ident: CR76
  article-title: A direct approach to false discovery rates
  publication-title: J.R. Statist. Soc. B
  doi: 10.1111/1467-9868.00346
  contributor:
    fullname: Storey
– volume: 7
  start-page: 7120
  year: 2016
  end-page: 7133
  ident: CR9
  article-title: Identifying and functionally characterizing tissue-specific and ubiquitously expressed human lncRNAs
  publication-title: Oncotarget
  doi: 10.18632/oncotarget.6859
  contributor:
    fullname: Jiang
– volume: 47
  start-page: D766
  year: 2019
  end-page: D773
  ident: CR34
  article-title: GENCODE reference annotation for the human and mouse genomes
  publication-title: Nucleic Acids Research
  doi: 10.1093/nar/gky955
  contributor:
    fullname: Frankish
– volume: 458
  start-page: 223
  year: 2009
  end-page: 227
  ident: CR7
  article-title: Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals
  publication-title: Nature
  doi: 10.1038/nature07672
  contributor:
    fullname: Guttman
– volume: 47
  start-page: D128
  year: 2019
  end-page: D134
  ident: CR27
  article-title: LncBook: a curated knowledgebase of human long non-coding RNAs
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky960
  contributor:
    fullname: Ma
– volume: 4
  start-page: e08890
  year: 2015
  ident: CR12
  article-title: Many lncRNAs, 5′UTRs, and pseudogenes are translated and some are likely to express functional proteins
  publication-title: Elife
  doi: 10.7554/eLife.08890
  contributor:
    fullname: Struhl
– volume: 30
  start-page: 2114
  year: 2014
  end-page: 2120
  ident: CR46
  article-title: Trimmomatic: a flexible trimmer for Illumina sequence data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu170
  contributor:
    fullname: Usadel
– volume: 18
  year: 2017
  ident: CR8
  article-title: Identification and characterization of conserved lncRNAs in human and rat brain
  publication-title: BMC Bioinformatics
  doi: 10.1186/s12859-017-1890-7
  contributor:
    fullname: Yang
– volume: 26
  start-page: 139
  year: 2010
  end-page: 140
  ident: CR61
  article-title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp616
  contributor:
    fullname: Smyth
– volume: 14
  start-page: 417
  year: 2017
  end-page: 419
  ident: CR49
  article-title: Salmon provides fast and bias-aware quantification of transcript expression
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4197
  contributor:
    fullname: Kingsford
– volume: 27
  start-page: 1050
  year: 2017
  end-page: 1062
  ident: CR26
  article-title: High-confidence coding and noncoding transcriptome maps
  publication-title: Genome Res.
  doi: 10.1101/gr.214288.116
  contributor:
    fullname: Nam
– volume: 12
  start-page: 41
  year: 2011
  end-page: 51
  ident: CR83
  article-title: PHAST and RPHAST: phylogenetic analysis with space/time models
  publication-title: Brief. Bioinformatics
  doi: 10.1093/bib/bbq072
  contributor:
    fullname: Siepel
– volume: 43
  start-page: D174
  year: 2015
  end-page: 180
  ident: CR19
  article-title: An update on LNCipedia: a database for annotated human lncRNA sequences
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1060
  contributor:
    fullname: Volders
– year: 2020
  ident: CR44
  publication-title: Open Science Framework
  doi: 10.17605/OSF.IO/RU4D2
  contributor:
    fullname: Pirooznia
– volume: 30
  start-page: 1618
  year: 2014
  end-page: 1619
  ident: CR80
  article-title: bwtool: a tool for bigWig files
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu056
  contributor:
    fullname: Beato
– ident: CR85
– volume: 9
  year: 2008
  ident: CR41
  article-title: WGCNA: an R package for weighted correlation network analysis
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-9-559
  contributor:
    fullname: Horvath
– volume: 15
  start-page: 1034
  year: 2005
  end-page: 1050
  ident: CR81
  article-title: Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
  publication-title: Genome Res.
  doi: 10.1101/gr.3715005
  contributor:
    fullname: Siepel
– ident: CR64
– volume: 43
  start-page: D1049
  year: 2015
  end-page: 1056
  ident: CR75
  article-title: Gene Ontology Consortium: going forward
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1179
– volume: 46
  start-page: D762
  year: 2018
  end-page: D769
  ident: CR38
  article-title: The UCSC Genome Browser database: 2018 update
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx1020
  contributor:
    fullname: Casper
– volume: 562
  start-page: 203
  year: 2018
  end-page: 209
  ident: CR42
  article-title: The UK Biobank resource with deep phenotyping and genomic data
  publication-title: Nature
  doi: 10.1038/s41586-018-0579-z
  contributor:
    fullname: Bycroft
– volume: 7
  start-page: 500
  year: 2012
  end-page: 507
  ident: CR67
  article-title: Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
  publication-title: Nat Protoc
  doi: 10.1038/nprot.2011.457
  contributor:
    fullname: Durbin
– volume: 11
  start-page: 1110
  year: 2015
  end-page: 1122
  ident: CR5
  article-title: Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species
  publication-title: Cell Rep
  doi: 10.1016/j.celrep.2015.04.023
  contributor:
    fullname: Hezroni
– volume: 543
  start-page: 199
  year: 2017
  end-page: 204
  ident: CR35
  article-title: An atlas of human long non-coding RNAs with accurate 5’ ends
  publication-title: Nature
  doi: 10.1038/nature21374
  contributor:
    fullname: Hon
– volume: 12
  start-page: 357
  year: 2015
  end-page: 360
  ident: CR47
  article-title: HISAT: a fast spliced aligner with low memory requirements
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3317
  contributor:
    fullname: Salzberg
– volume: 48
  start-page: 481
  year: 2016
  end-page: 487
  ident: CR43
  article-title: Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3538
  contributor:
    fullname: Zhu
– volume: 19
  year: 2018
  ident: CR71
  article-title: CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses
  publication-title: BMC Bioinformatics
  doi: 10.1186/s12859-018-2053-1
  contributor:
    fullname: Russo
– volume: 172
  start-page: 393
  year: 2018
  end-page: 407
  ident: CR3
  article-title: Functional Classification and Experimental Dissection of Long Noncoding RNAs
  publication-title: Cell
  doi: 10.1016/j.cell.2018.01.011
  contributor:
    fullname: Mendell
– volume: 4
  year: 2015
  ident: CR55
  article-title: Second-generation PLINK: rising to the challenge of larger and richer datasets
  publication-title: Gigascience
  doi: 10.1186/s13742-015-0047-8
  contributor:
    fullname: Chang
– ident: CR33
– volume: 14
  start-page: 708
  year: 2004
  end-page: 715
  ident: CR84
  article-title: Aligning multiple genomic sequences with the threaded blockset aligner
  publication-title: Genome Res.
  doi: 10.1101/gr.1933104
  contributor:
    fullname: Blanchette
– volume: 27
  start-page: 2156
  year: 2011
  end-page: 2158
  ident: CR57
  article-title: The variant call format and VCFtools
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr330
  contributor:
    fullname: Danecek
– volume: 18
  start-page: 236
  year: 2017
  end-page: 249
  ident: CR14
  article-title: A comprehensive overview of lncRNA annotation resources
  publication-title: Brief. Bioinformatics
  contributor:
    fullname: Xu
– volume: 25
  start-page: 1915
  year: 2011
  end-page: 1927
  ident: CR6
  article-title: Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
  publication-title: Genes Dev.
  doi: 10.1101/gad.17446611
  contributor:
    fullname: Cabili
– ident: CR56
– volume: 2
  start-page: e190
  year: 2006
  ident: CR60
  article-title: Population structure and eigenanalysis
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.0020190
  contributor:
    fullname: Reich
– ident: CR69
– volume: 41
  start-page: D246
  year: 2013
  end-page: 251
  ident: CR20
  article-title: LNCipedia: a database for annotated human lncRNA transcript sequences and structures
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks915
  contributor:
    fullname: Volders
– volume: 30
  start-page: 38
  year: 2002
  end-page: 41
  ident: CR30
  article-title: The Ensembl genome database project
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/30.1.38
  contributor:
    fullname: Hubbard
– volume: 11
  year: 2010
  ident: CR65
  article-title: A scaling normalization method for differential expression analysis of RNA-seq data
  publication-title: Genome Biology
  doi: 10.1186/gb-2010-11-3-r25
  contributor:
    fullname: Oshlack
– volume: 29
  start-page: 308
  year: 2001
  end-page: 311
  ident: CR59
  article-title: dbSNP: the NCBI database of genetic variation
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/29.1.308
  contributor:
    fullname: Sherry
– volume: 507
  start-page: 462
  year: 2014
  end-page: 470
  ident: CR22
  article-title: A promoter-level mammalian expression atlas
  publication-title: Nature
  doi: 10.1038/nature13182
– volume: 15
  start-page: 193
  year: 2014
  end-page: 204
  ident: CR11
  article-title: Emerging evidence for functional peptides encoded by short open reading frames
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg3520
  contributor:
    fullname: Rothnagel
– volume: 44
  start-page: D733
  year: 2016
  end-page: 745
  ident: CR31
  article-title: Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1189
  contributor:
    fullname: O’Leary
– volume: 30
  start-page: 923
  year: 2014
  end-page: 930
  ident: CR48
  article-title: featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btt656
  contributor:
    fullname: Shi
– ident: CR13
– volume: 15
  start-page: 901
  year: 2005
  end-page: 913
  ident: CR82
  article-title: Distribution and intensity of constraint in mammalian genomic sequence
  publication-title: Genome Res.
  doi: 10.1101/gr.3577405
  contributor:
    fullname: Cooper
– volume: 27
  start-page: 718
  year: 2011
  end-page: 719
  ident: CR66
  article-title: Tabix: fast retrieval of sequence features from generic TAB-delimited files
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btq671
  contributor:
    fullname: Li
– volume: 39
  start-page: D146
  year: 2011
  end-page: 151
  ident: CR17
  article-title: S. lncRNAdb: a reference database for long noncoding RNAs
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkq1138
  contributor:
    fullname: Mattick
– volume: 45
  start-page: 5
  year: 2001
  ident: CR79
  publication-title: Machine Learning.
  doi: 10.1023/A:1010933404324
  contributor:
    fullname: Breiman
– volume: 46
  start-page: D308
  year: 2018
  end-page: D314
  ident: CR21
  article-title: NONCODEV5: a comprehensive annotation database for long non-coding RNAs
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx1107
  contributor:
    fullname: Fang
– volume: 9
  start-page: e108010
  year: 2014
  ident: CR32
  article-title: LncRBase: an enriched resource for lncRNA information
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0108010
  contributor:
    fullname: Ghosh
– volume: 136
  start-page: 629
  year: 2009
  end-page: 641
  ident: CR2
  article-title: Evolution and functions of long noncoding RNAs
  publication-title: Cell
  doi: 10.1016/j.cell.2009.02.006
  contributor:
    fullname: Reik
– volume: 47
  start-page: 199
  year: 2015
  end-page: 208
  ident: CR25
  article-title: The landscape of long noncoding RNAs in the human transcriptome
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3192
  contributor:
    fullname: Iyer
– volume: 18
  start-page: 205
  year: 2017
  end-page: 214
  ident: CR53
  article-title: A benchmark of gene expression tissue-specificity metrics
  publication-title: Brief. Bioinformatics
  contributor:
    fullname: Robinson-Rechavi
– volume: 47
  start-page: D1250
  year: 2019
  end-page: D1251
  ident: CR28
  article-title: RNAcentral: a hub of information for non-coding RNA sequences
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1206
– volume: 47
  start-page: D330
  year: 2019
  end-page: D338
  ident: CR74
  article-title: The Gene Ontology Resource: 20 years and still GOing strong
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1055
– volume: 20
  start-page: 1655
  year: 2014
  end-page: 1665
  ident: CR15
  article-title: Databases for lncRNAs: a comparative evaluation of emerging tools
  publication-title: RNA
  doi: 10.1261/rna.044040.113
  contributor:
    fullname: Azuaje
– volume: 33
  start-page: 290
  year: 2015
  end-page: 295
  ident: CR36
  article-title: StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.3122
  contributor:
    fullname: Pertea
– volume: 15
  start-page: 1034
  year: 2005
  ident: 659_CR81
  publication-title: Genome Res.
  doi: 10.1101/gr.3715005
  contributor:
    fullname: A Siepel
– volume: 45
  start-page: e57
  year: 2017
  ident: 659_CR40
  publication-title: Nucleic Acids Res.
  contributor:
    fullname: V Wucher
– volume: 39
  start-page: D146
  year: 2011
  ident: 659_CR17
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkq1138
  contributor:
    fullname: PP Amaral
– ident: 659_CR85
  doi: 10.1016/S1365-6937(15)30249-5
– volume: 41
  start-page: D246
  year: 2013
  ident: 659_CR20
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gks915
  contributor:
    fullname: P-J Volders
– volume: 48
  start-page: 481
  year: 2016
  ident: 659_CR43
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3538
  contributor:
    fullname: Z Zhu
– volume: 18
  start-page: 205
  year: 2017
  ident: 659_CR53
  publication-title: Brief. Bioinformatics
  contributor:
    fullname: N Kryuchkova-Mostacci
– volume: 131
  start-page: 281
  year: 2012
  ident: 659_CR50
  publication-title: Theory Biosci.
  doi: 10.1007/s12064-012-0162-3
  contributor:
    fullname: GP Wagner
– volume: 64
  start-page: 479
  year: 2002
  ident: 659_CR76
  publication-title: J.R. Statist. Soc. B
  doi: 10.1111/1467-9868.00346
  contributor:
    fullname: JD Storey
– volume: 20
  start-page: 1655
  year: 2014
  ident: 659_CR15
  publication-title: RNA
  doi: 10.1261/rna.044040.113
  contributor:
    fullname: S Fritah
– volume: 45
  start-page: 5
  year: 2001
  ident: 659_CR79
  publication-title: Machine Learning.
  doi: 10.1023/A:1010933404324
  contributor:
    fullname: L Breiman
– ident: 659_CR33
  doi: 10.1093/database/bat034
– volume: 4
  start-page: e08890
  year: 2015
  ident: 659_CR12
  publication-title: Elife
  doi: 10.7554/eLife.08890
  contributor:
    fullname: Z Ji
– volume: 30
  start-page: 2114
  year: 2014
  ident: 659_CR46
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu170
  contributor:
    fullname: AM Bolger
– volume: 374
  start-page: 20150202
  year: 2016
  ident: 659_CR52
  publication-title: Philos Trans A Math Phys Eng Sci
  contributor:
    fullname: IT Jolliffe
– volume: 15
  start-page: 901
  year: 2005
  ident: 659_CR82
  publication-title: Genome Res.
  doi: 10.1101/gr.3577405
  contributor:
    fullname: GM Cooper
– volume: 2
  start-page: e190
  year: 2006
  ident: 659_CR60
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.0020190
  contributor:
    fullname: N Patterson
– volume: 11
  year: 2010
  ident: 659_CR65
  publication-title: Genome Biology
  doi: 10.1186/gb-2010-11-3-r25
  contributor:
    fullname: MD Robinson
– volume: 32
  start-page: 1479
  year: 2016
  ident: 659_CR68
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv722
  contributor:
    fullname: H Ongen
– volume: 75
  start-page: 1435
  year: 2018
  ident: 659_CR87
  publication-title: Cell. Mol. Life Sci.
  doi: 10.1007/s00018-017-2737-0
  contributor:
    fullname: J Man
– volume: 9
  start-page: e108010
  year: 2014
  ident: 659_CR32
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0108010
  contributor:
    fullname: S Chakraborty
– volume: 11
  start-page: 1110
  year: 2015
  ident: 659_CR5
  publication-title: Cell Rep
  doi: 10.1016/j.celrep.2015.04.023
  contributor:
    fullname: H Hezroni
– volume: 30
  start-page: 38
  year: 2002
  ident: 659_CR30
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/30.1.38
  contributor:
    fullname: T Hubbard
– ident: 659_CR4
– volume: 458
  start-page: 223
  year: 2009
  ident: 659_CR7
  publication-title: Nature
  doi: 10.1038/nature07672
  contributor:
    fullname: M Guttman
– volume: 18
  year: 2017
  ident: 659_CR8
  publication-title: BMC Bioinformatics
  doi: 10.1186/s12859-017-1890-7
  contributor:
    fullname: D Li
– volume: 7
  start-page: 562
  year: 2012
  ident: 659_CR37
  publication-title: Nat Protoc
  doi: 10.1038/nprot.2012.016
  contributor:
    fullname: C Trapnell
– volume: 29
  start-page: 308
  year: 2001
  ident: 659_CR59
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/29.1.308
  contributor:
    fullname: ST Sherry
– volume: 47
  start-page: D1250
  year: 2019
  ident: 659_CR28
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1206
  contributor:
    fullname: The RNAcentral Consortium
– volume: 38
  start-page: 904
  year: 2006
  ident: 659_CR51
  publication-title: Nat. Genet.
  doi: 10.1038/ng1847
  contributor:
    fullname: AL Price
– ident: 659_CR56
  doi: 10.1086/519795
– ident: 659_CR45
– volume: 7
  start-page: 500
  year: 2012
  ident: 659_CR67
  publication-title: Nat Protoc
  doi: 10.1038/nprot.2011.457
  contributor:
    fullname: O Stegle
– volume: 14
  start-page: 417
  year: 2017
  ident: 659_CR49
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4197
  contributor:
    fullname: R Patro
– volume: 7
  start-page: 7120
  year: 2016
  ident: 659_CR9
  publication-title: Oncotarget
  doi: 10.18632/oncotarget.6859
  contributor:
    fullname: C Jiang
– volume: 15
  year: 2014
  ident: 659_CR63
  publication-title: Genome Biology
  doi: 10.1186/gb-2014-15-2-r29
  contributor:
    fullname: CW Law
– volume: 47
  start-page: D330
  year: 2019
  ident: 659_CR74
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky1055
  contributor:
    fullname: The Gene Ontology Consortium
– volume: 172
  start-page: 393
  year: 2018
  ident: 659_CR3
  publication-title: Cell
  doi: 10.1016/j.cell.2018.01.011
  contributor:
    fullname: F Kopp
– volume: 12
  start-page: 357
  year: 2015
  ident: 659_CR47
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3317
  contributor:
    fullname: D Kim
– volume: 19
  year: 2018
  ident: 659_CR71
  publication-title: BMC Bioinformatics
  doi: 10.1186/s12859-018-2053-1
  contributor:
    fullname: PST Russo
– volume: 543
  start-page: 199
  year: 2017
  ident: 659_CR35
  publication-title: Nature
  doi: 10.1038/nature21374
  contributor:
    fullname: C-C Hon
– volume: 4
  year: 2015
  ident: 659_CR55
  publication-title: Gigascience
  doi: 10.1186/s13742-015-0047-8
  contributor:
    fullname: CC Chang
– volume: 43
  start-page: e47
  year: 2015
  ident: 659_CR62
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv007
  contributor:
    fullname: ME Ritchie
– volume: 22
  start-page: 1775
  year: 2012
  ident: 659_CR29
  publication-title: Genome Res.
  doi: 10.1101/gr.132159.111
  contributor:
    fullname: T Derrien
– volume: 25
  start-page: 25
  year: 2000
  ident: 659_CR73
  publication-title: Nat. Genet.
  doi: 10.1038/75556
  contributor:
    fullname: M Ashburner
– volume: 46
  start-page: D308
  year: 2018
  ident: 659_CR21
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx1107
  contributor:
    fullname: S Fang
– year: 2020
  ident: 659_CR78
  doi: 10.6084/M9.FIGSHARE.12563864.V3
  contributor:
    fullname: M Pirooznia
– volume: 43
  start-page: D174
  year: 2015
  ident: 659_CR19
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1060
  contributor:
    fullname: P-J Volders
– volume: 25
  start-page: 1915
  year: 2011
  ident: 659_CR6
  publication-title: Genes Dev.
  doi: 10.1101/gad.17446611
  contributor:
    fullname: MN Cabili
– volume: 13
  start-page: 2498
  year: 2003
  ident: 659_CR77
  publication-title: Genome Res.
  doi: 10.1101/gr.1239303
  contributor:
    fullname: P Shannon
– volume: 562
  start-page: 203
  year: 2018
  ident: 659_CR42
  publication-title: Nature
  doi: 10.1038/s41586-018-0579-z
  contributor:
    fullname: C Bycroft
– volume: 30
  start-page: 1618
  year: 2014
  ident: 659_CR80
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btu056
  contributor:
    fullname: A Pohl
– volume: 18
  start-page: 236
  year: 2017
  ident: 659_CR14
  publication-title: Brief. Bioinformatics
  contributor:
    fullname: J Xu
– volume: 338
  start-page: 1435
  year: 2012
  ident: 659_CR1
  publication-title: Science
  doi: 10.1126/science.1231776
  contributor:
    fullname: JT Lee
– volume: 9
  year: 2008
  ident: 659_CR41
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-9-559
  contributor:
    fullname: P Langfelder
– volume: 136
  start-page: 629
  year: 2009
  ident: 659_CR2
  publication-title: Cell
  doi: 10.1016/j.cell.2009.02.006
  contributor:
    fullname: CP Ponting
– volume: 1859
  start-page: 31
  year: 2016
  ident: 659_CR10
  publication-title: Biochim. Biophys. Acta
  doi: 10.1016/j.bbagrm.2015.07.017
  contributor:
    fullname: G Housman
– volume: 27
  start-page: 1050
  year: 2017
  ident: 659_CR26
  publication-title: Genome Res.
  doi: 10.1101/gr.214288.116
  contributor:
    fullname: B-H You
– volume: 47
  start-page: D128
  year: 2019
  ident: 659_CR27
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky960
  contributor:
    fullname: L Ma
– volume: 43
  start-page: D1049
  year: 2015
  ident: 659_CR75
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1179
  contributor:
    fullname: Gene Ontology Consortium
– volume: 12
  start-page: 41
  year: 2011
  ident: 659_CR83
  publication-title: Brief. Bioinformatics
  doi: 10.1093/bib/bbq072
  contributor:
    fullname: MJ Hubisz
– ident: 659_CR13
  doi: 10.1038/s41576-018-0017-y
– volume: 33
  start-page: 290
  year: 2015
  ident: 659_CR36
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.3122
  contributor:
    fullname: M Pertea
– volume: 27
  start-page: 2156
  year: 2011
  ident: 659_CR57
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr330
  contributor:
    fullname: P Danecek
– volume: 16
  start-page: 284
  year: 2012
  ident: 659_CR72
  publication-title: OMICS
  doi: 10.1089/omi.2011.0118
  contributor:
    fullname: G Yu
– volume: 26
  start-page: 139
  year: 2010
  ident: 659_CR61
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp616
  contributor:
    fullname: MD Robinson
– volume: 38
  start-page: D123
  year: 2010
  ident: 659_CR23
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkp943
  contributor:
    fullname: J-H Yang
– volume: 19
  year: 2018
  ident: 659_CR18
  publication-title: Genome Biol.
  doi: 10.1186/s13059-018-1590-2
  contributor:
    fullname: M Pertea
– volume: 47
  start-page: 199
  year: 2015
  ident: 659_CR25
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3192
  contributor:
    fullname: MK Iyer
– volume: 14
  start-page: 708
  year: 2004
  ident: 659_CR84
  publication-title: Genome Res.
  doi: 10.1101/gr.1933104
  contributor:
    fullname: M Blanchette
– volume: 44
  start-page: D231
  year: 2016
  ident: 659_CR16
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1270
  contributor:
    fullname: MD Paraskevopoulou
– volume: 47
  start-page: D1034
  year: 2019
  ident: 659_CR86
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gky905
  contributor:
    fullname: Z Bao
– volume: 32
  start-page: 1749
  year: 2016
  ident: 659_CR58
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btw044
  contributor:
    fullname: V Narasimhan
– volume: 30
  start-page: 923
  year: 2014
  ident: 659_CR48
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btt656
  contributor:
    fullname: Y Liao
– volume: 43
  start-page: D187
  year: 2015
  ident: 659_CR24
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gku1167
  contributor:
    fullname: L Ma
– volume: 507
  start-page: 462
  year: 2014
  ident: 659_CR22
  publication-title: Nature
  doi: 10.1038/nature13182
  contributor:
    fullname: FANTOM Consortium and the RIKEN PMI and CLST (DGT)
– volume: 550
  start-page: 204
  year: 2017
  ident: 659_CR39
  publication-title: Nature
  doi: 10.1038/nature24277
  contributor:
    fullname: GTEx Consortium
– ident: 659_CR64
– volume: 11
  year: 2010
  ident: 659_CR54
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-11-305
  contributor:
    fullname: J Russ
– volume: 47
  start-page: D766
  year: 2019
  ident: 659_CR34
  publication-title: Nucleic Acids Research
  doi: 10.1093/nar/gky955
  contributor:
    fullname: A Frankish
– volume: 27
  start-page: 718
  year: 2011
  ident: 659_CR66
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btq671
  contributor:
    fullname: H Li
– ident: 659_CR70
  doi: 10.1101/005165
– year: 2020
  ident: 659_CR44
  doi: 10.17605/OSF.IO/RU4D2
  contributor:
    fullname: M Pirooznia
– volume: 15
  start-page: 193
  year: 2014
  ident: 659_CR11
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg3520
  contributor:
    fullname: SJ Andrews
– ident: 659_CR69
  doi: 10.1007/978-1-4419-9863-7_1215
– volume: 44
  start-page: D733
  year: 2016
  ident: 659_CR31
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv1189
  contributor:
    fullname: NA O’Leary
– volume: 46
  start-page: D762
  year: 2018
  ident: 659_CR38
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkx1020
  contributor:
    fullname: J Casper
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631/114/1314
631/114/2401
631/114/2404
Computer applications
Data Descriptor
Digital curation
Gene expression
Genomes
Genotypes
Humanities and Social Sciences
Humans
Knowledge Bases
Molecular Sequence Annotation
multidisciplinary
Non-coding RNA
Nucleotide sequence
Organ Specificity
Phylogeny
Quantitative Trait Loci
RNA, Long Noncoding - genetics
Science
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Title lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA
URI https://link.springer.com/article/10.1038/s41597-020-00659-z
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