Tumour heterogeneity and intercellular networks of nasopharyngeal carcinoma at single cell resolution
The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses rev...
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Published in | Nature communications Vol. 12; no. 1; pp. 741 - 18 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
02.02.2021
Nature Publishing Group Nature Portfolio |
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Online Access | Get full text |
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Abstract | The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8
+
T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8
+
T and immune-suppressive TNFRSF4
+
Treg cells in tumours might derive from peripheral CX3CR1
+
CD8
+
T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3
+
DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3
+
DCs, Treg, exhausted CD8
+
T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC.
Nasopharyngeal carcinoma is a diverse cancer characterised by a heterogeneous microenvironment. Here, the authors use single cell sequencing to analyse the tumour microenvironment in 10 nasopharyngeal carcinoma tumours and identify different cell types including immune-suppressive T regulatory, tolerogenic dendritic, and exhausted CD8 T cells. |
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AbstractList | Nasopharyngeal carcinoma is a diverse cancer characterised by a heterogeneous microenvironment. Here, the authors use single cell sequencing to analyse the tumour microenvironment in 10 nasopharyngeal carcinoma tumours and identify different cell types including immune-suppressive T regulatory, tolerogenic dendritic, and exhausted CD8 T cells. The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8 + T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8 + T and immune-suppressive TNFRSF4 + Treg cells in tumours might derive from peripheral CX3CR1 + CD8 + T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3 + DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3 + DCs, Treg, exhausted CD8 + T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC. Nasopharyngeal carcinoma is a diverse cancer characterised by a heterogeneous microenvironment. Here, the authors use single cell sequencing to analyse the tumour microenvironment in 10 nasopharyngeal carcinoma tumours and identify different cell types including immune-suppressive T regulatory, tolerogenic dendritic, and exhausted CD8 T cells. The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8 T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8 T and immune-suppressive TNFRSF4 Treg cells in tumours might derive from peripheral CX3CR1 CD8 T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3 DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3 DCs, Treg, exhausted CD8 T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC. The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8+ T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8+ T and immune-suppressive TNFRSF4+ Treg cells in tumours might derive from peripheral CX3CR1+CD8+ T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3+ DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3+ DCs, Treg, exhausted CD8+ T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC.Nasopharyngeal carcinoma is a diverse cancer characterised by a heterogeneous microenvironment. Here, the authors use single cell sequencing to analyse the tumour microenvironment in 10 nasopharyngeal carcinoma tumours and identify different cell types including immune-suppressive T regulatory, tolerogenic dendritic, and exhausted CD8 T cells. The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8+ T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8+ T and immune-suppressive TNFRSF4+ Treg cells in tumours might derive from peripheral CX3CR1+CD8+ T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3+ DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3+ DCs, Treg, exhausted CD8+ T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC.The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8+ T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8+ T and immune-suppressive TNFRSF4+ Treg cells in tumours might derive from peripheral CX3CR1+CD8+ T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3+ DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3+ DCs, Treg, exhausted CD8+ T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC. The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we profile 176,447 cells from 10 NPC tumour-blood pairs, using single-cell transcriptome coupled with T cell receptor sequencing. Our analyses reveal 53 cell subtypes, including tumour-infiltrating CD8 + T, regulatory T (Treg), and dendritic cells (DCs), as well as malignant cells with different Epstein-Barr virus infection status. Trajectory analyses reveal exhausted CD8 + T and immune-suppressive TNFRSF4 + Treg cells in tumours might derive from peripheral CX3CR1 + CD8 + T and naïve Treg cells, respectively. Moreover, we identify immune-regulatory and tolerogenic LAMP3 + DCs. Noteworthily, we observe intensive inter-cell interactions among LAMP3 + DCs, Treg, exhausted CD8 + T, and malignant cells, suggesting potential cross-talks to foster an immune-suppressive niche for the TME. Collectively, our study uncovers the heterogeneity and interacting molecules of the TME in NPC at single-cell resolution, which provide insights into the mechanisms underlying NPC progression and the development of precise therapies for NPC. |
ArticleNumber | 741 |
Author | Wei, Pan-Pan Zhang, Zemin Zeng, Yi-Xin Peng, Wan Chen, Qiu-Yan Bei, Jin-Xin Liu, Yang Chi, Dong-Mei Guo, Xiang Wang, Qian-Yu Hu, Xue-Da Chen, Jie-Rong He, Shuai Li, Bo Wang, Xi-Liang Li, Yi-Qi Xia, Xiaojun Mai, Hai-Qiang Lin, Guo-Wang Peng, Rou-Jun Han, Bo-Wei |
Author_xml | – sequence: 1 givenname: Yang surname: Liu fullname: Liu, Yang organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 2 givenname: Shuai orcidid: 0000-0001-6619-1039 surname: He fullname: He, Shuai organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, The Eighth Affiliated Hospital, Sun Yat-sen University, Center for Precision Medicine, Sun Yat-sen University – sequence: 3 givenname: Xi-Liang surname: Wang fullname: Wang, Xi-Liang organization: BIOPIC, Beijing Advanced Innovation Center for Genomics, School of Life Sciences, Peking University – sequence: 4 givenname: Wan surname: Peng fullname: Peng, Wan organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 5 givenname: Qiu-Yan surname: Chen fullname: Chen, Qiu-Yan organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 6 givenname: Dong-Mei surname: Chi fullname: Chi, Dong-Mei organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Department of Anesthesiology, Sun Yat-sen University Cancer Center – sequence: 7 givenname: Jie-Rong surname: Chen fullname: Chen, Jie-Rong organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Guangdong General Hospital, Guangdong Academy of Medical Sciences – sequence: 8 givenname: Bo-Wei surname: Han fullname: Han, Bo-Wei organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 9 givenname: Guo-Wang surname: Lin fullname: Lin, Guo-Wang organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Department of Laboratory Medicine, Zhujiang Hospital, Southern Medical University – sequence: 10 givenname: Yi-Qi surname: Li fullname: Li, Yi-Qi organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 11 givenname: Qian-Yu orcidid: 0000-0002-3902-4339 surname: Wang fullname: Wang, Qian-Yu organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 12 givenname: Rou-Jun surname: Peng fullname: Peng, Rou-Jun organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 13 givenname: Pan-Pan surname: Wei fullname: Wei, Pan-Pan organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 14 givenname: Xiang surname: Guo fullname: Guo, Xiang organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 15 givenname: Bo orcidid: 0000-0002-7979-8339 surname: Li fullname: Li, Bo organization: Department of Biochemistry and Molecular Biology, Zhongshan School of Medicine, Sun Yat-sen University, RNA Biomedical Institute, Sun Yat-sen Memorial Hospital, Sun Yat-sen University – sequence: 16 givenname: Xiaojun orcidid: 0000-0003-4444-7472 surname: Xia fullname: Xia, Xiaojun organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 17 givenname: Hai-Qiang surname: Mai fullname: Mai, Hai-Qiang organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 18 givenname: Xue-Da surname: Hu fullname: Hu, Xue-Da organization: BIOPIC, Beijing Advanced Innovation Center for Genomics, School of Life Sciences, Peking University – sequence: 19 givenname: Zemin orcidid: 0000-0003-3789-6536 surname: Zhang fullname: Zhang, Zemin email: zemin@pku.edu.cn organization: BIOPIC, Beijing Advanced Innovation Center for Genomics, School of Life Sciences, Peking University, Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University – sequence: 20 givenname: Yi-Xin orcidid: 0000-0002-6515-628X surname: Zeng fullname: Zeng, Yi-Xin email: zengyx@sysucc.org.cn organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy – sequence: 21 givenname: Jin-Xin orcidid: 0000-0003-1333-407X surname: Bei fullname: Bei, Jin-Xin email: beijx@sysucc.org.cn organization: Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, The Eighth Affiliated Hospital, Sun Yat-sen University, Center for Precision Medicine, Sun Yat-sen University |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33531485$$D View this record in MEDLINE/PubMed |
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Snippet | The heterogeneous nature of tumour microenvironment (TME) underlying diverse treatment responses remains unclear in nasopharyngeal carcinoma (NPC). Here, we... Nasopharyngeal carcinoma is a diverse cancer characterised by a heterogeneous microenvironment. Here, the authors use single cell sequencing to analyse the... |
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SubjectTerms | 38/39 631/250/580 631/67/1536 631/67/2329 631/67/327 82/51 96/31 Cancer CD8 antigen CD8-Positive T-Lymphocytes - enzymology CD8-Positive T-Lymphocytes - metabolism Cell interactions Cells, Cultured CX3CR1 protein Dendritic cells Dendritic Cells - immunology Dendritic Cells - metabolism Epstein-Barr virus Gene expression Head and Neck Neoplasms - immunology Head and Neck Neoplasms - metabolism Heterogeneity High-Throughput Nucleotide Sequencing Humanities and Social Sciences Humans Lymphocytes Lymphocytes T Male Microenvironments multidisciplinary Nasopharyngeal carcinoma Nasopharyngeal Carcinoma - immunology Nasopharyngeal Carcinoma - metabolism Science Science (multidisciplinary) T cell receptors T-Lymphocytes, Regulatory - immunology T-Lymphocytes, Regulatory - metabolism Throat cancer Trajectory analysis Transcriptomes Tumor microenvironment Tumor Microenvironment - immunology Tumor Microenvironment - physiology Tumors |
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Title | Tumour heterogeneity and intercellular networks of nasopharyngeal carcinoma at single cell resolution |
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