Signatures of selection in recently domesticated macadamia

Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication even...

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Published inNature communications Vol. 13; no. 1; pp. 242 - 12
Main Authors Lin, Jishan, Zhang, Wenping, Zhang, Xingtan, Ma, Xiaokai, Zhang, Shengcheng, Chen, Shuai, Wang, Yibin, Jia, Haifeng, Liao, Zhenyang, Lin, Jing, Zhu, Mengting, Xu, Xiuming, Cai, Mingxing, Zeng, Hui, Wan, Jifeng, Yang, Weihai, Matsumoto, Tracie, Hardner, Craig, Nock, Catherine J., Ming, Ray
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 11.01.2022
Nature Publishing Group
Nature Portfolio
Subjects
38
45
45/23
45/91
631/181/2474
631/208/726/649
631/208/8
631/449/2491
Australia
Biosynthesis
Chromosome Mapping
Chromosomes
Chromosomes, Plant
Crops
Crops, Agricultural
Cultivars
Domestication
Fatty acids
Fatty Acids - biosynthesis
Gene Duplication
Gene families
Gene sequencing
Genes
Genome, Plant
Genomes
Genomic analysis
Genomics
Hawaii
Heat stress
Heat tolerance
Heat-Shock Response
Humanities and Social Sciences
Humans
Macadamia
Macadamia - genetics
multidisciplinary
Nucleotide sequence
Nuts
Proanthocyanidins - biosynthesis
Reproduction (copying)
Science
Science (multidisciplinary)
Seed coats
Seeds - genetics
Seeds - growth & development
Transcription factors
Hawaii
Australia
Online AccessGet full text

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Abstract Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for ‘one-step operation’ for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species. Macadamia is a recently domesticated nut crop. Here, the authors report the genome assembly of Hawaiian cultivar ‘Kau’ and conduct population genomic analyses to reveal the origin of Hawaiian cultivars and the genomic basis for one-step operation for the clonal crop domestication.
AbstractList Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar 'Kau' and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for 'one-step operation' for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar 'Kau' and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for 'one-step operation' for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.
Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for ‘one-step operation’ for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.Macadamia is a recently domesticated nut crop. Here, the authors report the genome assembly of Hawaiian cultivar ‘Kau’ and conduct population genomic analyses to reveal the origin of Hawaiian cultivars and the genomic basis for one-step operation for the clonal crop domestication.
Macadamia is a recently domesticated nut crop. Here, the authors report the genome assembly of Hawaiian cultivar ‘Kau’ and conduct population genomic analyses to reveal the origin of Hawaiian cultivars and the genomic basis for one-step operation for the clonal crop domestication.
Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for ‘one-step operation’ for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species.
Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of Hawaiian cultivar ‘Kau’ and assemble into 794 Mb in 14 pseudo-chromosomes with 37,728 genes. Genome analysis reveals a whole-genome duplication event, occurred 46.8 million years ago. Gene expansions occurred in gene families involves in fatty acid biosynthesis. Gene duplication of MADS-Box transcription factors in proanthocyanidin biosynthesis are relevant for seed coat development. Genome re-sequencing of 112 accessions reveals the origin of Hawaiian cultivars from Mount Bauple in southeast Queensland in Australia. Selective sweeps are detected in macadamia cultivars, including genes involved in fatty acid biosynthesis, seed coat development, and heat stress response. Such strong effects of artificial selection in few generations reveals the genomic basis for ‘one-step operation’ for clonal crop domestication. The knowledge gained could accelerate domestication of new crops from wild species. Macadamia is a recently domesticated nut crop. Here, the authors report the genome assembly of Hawaiian cultivar ‘Kau’ and conduct population genomic analyses to reveal the origin of Hawaiian cultivars and the genomic basis for one-step operation for the clonal crop domestication.
ArticleNumber 242
Author Wan, Jifeng
Xu, Xiuming
Zhang, Wenping
Chen, Shuai
Lin, Jing
Cai, Mingxing
Lin, Jishan
Ma, Xiaokai
Zhu, Mengting
Wang, Yibin
Hardner, Craig
Jia, Haifeng
Zeng, Hui
Zhang, Shengcheng
Yang, Weihai
Nock, Catherine J.
Zhang, Xingtan
Liao, Zhenyang
Matsumoto, Tracie
Ming, Ray
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/35017544$$D View this record in MEDLINE/PubMed
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SSID ssj0000391844
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Snippet Macadamia is a high value nut crop that is recently domesticated, ideal for testing the effect of artificial selection. Here, we sequence the genome of...
Macadamia is a recently domesticated nut crop. Here, the authors report the genome assembly of Hawaiian cultivar ‘Kau’ and conduct population genomic analyses...
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pubmedcentral
proquest
pubmed
crossref
springer
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 242
SubjectTerms 38
45
45/23
45/91
631/181/2474
631/208/726/649
631/208/8
631/449/2491
Australia
Biosynthesis
Chromosome Mapping
Chromosomes
Chromosomes, Plant
Crops
Crops, Agricultural
Cultivars
Domestication
Fatty acids
Fatty Acids - biosynthesis
Gene Duplication
Gene families
Gene sequencing
Genes
Genome, Plant
Genomes
Genomic analysis
Genomics
Hawaii
Heat stress
Heat tolerance
Heat-Shock Response
Humanities and Social Sciences
Humans
Macadamia
Macadamia - genetics
multidisciplinary
Nucleotide sequence
Nuts
Proanthocyanidins - biosynthesis
Reproduction (copying)
Science
Science (multidisciplinary)
Seed coats
Seeds - genetics
Seeds - growth & development
Transcription factors
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Title Signatures of selection in recently domesticated macadamia
URI https://link.springer.com/article/10.1038/s41467-021-27937-7
https://www.ncbi.nlm.nih.gov/pubmed/35017544
https://www.proquest.com/docview/2618748244
https://www.proquest.com/docview/2619215752
https://pubmed.ncbi.nlm.nih.gov/PMC8752631
https://doaj.org/article/db09298d2c5f41a082ba61cec6d08d77
Volume 13
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