Dominant subtype switch in avian influenza viruses during 2016–2019 in China

We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next gen...

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Published inNature communications Vol. 11; no. 1; pp. 5909 - 12
Main Authors Bi, Yuhai, Li, Juan, Li, Shanqin, Fu, Guanghua, Jin, Tao, Zhang, Cheng, Yang, Yongchun, Ma, Zhenghai, Tian, Wenxia, Li, Jida, Xiao, Shuqi, Li, Liqiang, Yin, Renfu, Zhang, Yi, Wang, Lixin, Qin, Yantao, Yao, Zhongzi, Meng, Fanyu, Hu, Dongfang, Li, Delong, Wong, Gary, Liu, Fei, Lv, Na, Wang, Liang, Fu, Lifeng, Yang, Yang, Peng, Yun, Ma, Jinmin, Sharshov, Kirill, Shestopalov, Alexander, Gulyaeva, Marina, Gao, George F., Chen, Jianjun, Shi, Yi, Liu, William J., Chu, Dong, Huang, Yu, Liu, Yingxia, Liu, Lei, Liu, Wenjun, Chen, Quanjiao, Shi, Weifeng
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 20.11.2020
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Abstract We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014–2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide. In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
AbstractList We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014–2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide. In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014-2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide.We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014-2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide.
We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014-2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide.
In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were collected from May 2016 to February 2019 in 23 provinces and municipalities in China. We identify 2048 AIV-positive samples and perform next generation sequencing. AIV-positive rates (12.73%) from samples had decreased substantially since 2016, compared to that during 2014–2016 (26.90%). Additionally, H9N2 has replaced H5N6 and H7N9 as the dominant AIV subtype in both chickens and ducks. Notably, novel reassortants and variants continually emerged and disseminated in avian populations, including H7N3, H9N9, H9N6 and H5N6 variants. Importantly, almost all of the H9 AIVs and many H7N9 and H6N2 strains prefer human-type receptors, posing an increased risk for human infections. In summary, our nation-wide surveillance highlights substantial changes in the circulation of AIVs since 2016, which greatly impacts the prevention and control of AIVs in China and worldwide.In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of variants have emerged since 2016 that pose an increased risk to humans. They highlight the importance of continuous genome surveillance of circulating influenza strains.
ArticleNumber 5909
Author Tian, Wenxia
Shi, Yi
Zhang, Cheng
Fu, Lifeng
Gulyaeva, Marina
Jin, Tao
Li, Liqiang
Zhang, Yi
Li, Delong
Yao, Zhongzi
Chen, Quanjiao
Qin, Yantao
Liu, Wenjun
Bi, Yuhai
Gao, George F.
Liu, Fei
Peng, Yun
Liu, William J.
Sharshov, Kirill
Li, Shanqin
Xiao, Shuqi
Wong, Gary
Liu, Yingxia
Yin, Renfu
Hu, Dongfang
Ma, Zhenghai
Huang, Yu
Ma, Jinmin
Li, Juan
Yang, Yang
Li, Jida
Liu, Lei
Yang, Yongchun
Wang, Lixin
Lv, Na
Meng, Fanyu
Shestopalov, Alexander
Shi, Weifeng
Chen, Jianjun
Fu, Guanghua
Wang, Liang
Chu, Dong
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/33219213$$D View this record in MEDLINE/PubMed
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Snippet We have surveyed avian influenza virus (AIV) genomes from live poultry markets within China since 2014. Here we present a total of 16,091 samples that were...
In this study, the authors present a genomic surveillance of avian influenza genomes sampled from live poultry markets in China. They report that a number of...
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SubjectTerms 45/23
45/90
631/181/757
631/208/726
631/326/596/1578
692/308/174
Animals
Aquatic birds
Avian flu
Bird populations
Birds
Chickens - virology
China - epidemiology
Ducks - virology
Genome, Viral
Genomes
Humanities and Social Sciences
Humans
Influenza
Influenza A virus - genetics
Influenza A virus - isolation & purification
Influenza A Virus, H7N3 Subtype - genetics
Influenza A Virus, H7N3 Subtype - isolation & purification
Influenza A Virus, H7N9 Subtype - genetics
Influenza A Virus, H7N9 Subtype - isolation & purification
Influenza A Virus, H9N2 Subtype - genetics
Influenza A Virus, H9N2 Subtype - isolation & purification
Influenza in Birds - epidemiology
Influenza in Birds - prevention & control
Influenza in Birds - virology
Influenza, Human - virology
multidisciplinary
Municipalities
Next-generation sequencing
Phylogeny
Poultry
Poultry - virology
Reassortant Viruses - genetics
Reassortant Viruses - isolation & purification
Science
Science (multidisciplinary)
Strains (organisms)
Surveillance
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Title Dominant subtype switch in avian influenza viruses during 2016–2019 in China
URI https://link.springer.com/article/10.1038/s41467-020-19671-3
https://www.ncbi.nlm.nih.gov/pubmed/33219213
https://www.proquest.com/docview/2473210830
https://www.proquest.com/docview/2463104651
https://pubmed.ncbi.nlm.nih.gov/PMC7679419
https://doaj.org/article/c98e5ea0814345df9d3679a98ebac9fe
Volume 11
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