A constricted opening in Kir channels does not impede potassium conduction

The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K + ions maintain a complete hydration shell while passing between the transmemb...

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Published inNature communications Vol. 11; no. 1; pp. 3024 - 13
Main Authors Black, Katrina A., He, Sitong, Jin, Ruitao, Miller, David M., Bolla, Jani R., Clarke, Oliver B., Johnson, Paul, Windley, Monique, Burns, Christopher J., Hill, Adam P., Laver, Derek, Robinson, Carol V., Smith, Brian J., Gulbis, Jacqueline M.
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Abstract The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K + ions maintain a complete hydration shell while passing between the transmembrane cavity and cytosol, which must be accommodated. To put the canonical model to the test, we locked the conformation of a Kir K + channel to prevent widening of the narrow collar. Unexpectedly, conduction was unimpaired in the locked channels. In parallel, we employed all-atom molecular dynamics to simulate K + ions moving along the conduction pathway between the lower cavity and cytosol. During simulations, the constriction did not significantly widen. Instead, transient loss of some water molecules facilitated K + permeation through the collar. The low free energy barrier to partial dehydration in the absence of conformational change indicates Kir channels are not gated by the canonical mechanism. The transition between conducting and non-conducting states of K + channels has been explained by conformational changes at the intracellular entrance to the conduction pathway. Here authors demonstrate that control over K + currents in Kir channels is not explained by the canonical pore-gating model, as conduction is not impaired by a constricted inner helix bundle.
AbstractList The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K ions maintain a complete hydration shell while passing between the transmembrane cavity and cytosol, which must be accommodated. To put the canonical model to the test, we locked the conformation of a Kir K channel to prevent widening of the narrow collar. Unexpectedly, conduction was unimpaired in the locked channels. In parallel, we employed all-atom molecular dynamics to simulate K ions moving along the conduction pathway between the lower cavity and cytosol. During simulations, the constriction did not significantly widen. Instead, transient loss of some water molecules facilitated K permeation through the collar. The low free energy barrier to partial dehydration in the absence of conformational change indicates Kir channels are not gated by the canonical mechanism.
The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K + ions maintain a complete hydration shell while passing between the transmembrane cavity and cytosol, which must be accommodated. To put the canonical model to the test, we locked the conformation of a Kir K + channel to prevent widening of the narrow collar. Unexpectedly, conduction was unimpaired in the locked channels. In parallel, we employed all-atom molecular dynamics to simulate K + ions moving along the conduction pathway between the lower cavity and cytosol. During simulations, the constriction did not significantly widen. Instead, transient loss of some water molecules facilitated K + permeation through the collar. The low free energy barrier to partial dehydration in the absence of conformational change indicates Kir channels are not gated by the canonical mechanism. The transition between conducting and non-conducting states of K + channels has been explained by conformational changes at the intracellular entrance to the conduction pathway. Here authors demonstrate that control over K + currents in Kir channels is not explained by the canonical pore-gating model, as conduction is not impaired by a constricted inner helix bundle.
The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K + ions maintain a complete hydration shell while passing between the transmembrane cavity and cytosol, which must be accommodated. To put the canonical model to the test, we locked the conformation of a Kir K + channel to prevent widening of the narrow collar. Unexpectedly, conduction was unimpaired in the locked channels. In parallel, we employed all-atom molecular dynamics to simulate K + ions moving along the conduction pathway between the lower cavity and cytosol. During simulations, the constriction did not significantly widen. Instead, transient loss of some water molecules facilitated K + permeation through the collar. The low free energy barrier to partial dehydration in the absence of conformational change indicates Kir channels are not gated by the canonical mechanism.
The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like intracellular entrance to the pore. It is based on the premise that K+ ions maintain a complete hydration shell while passing between the transmembrane cavity and cytosol, which must be accommodated. To put the canonical model to the test, we locked the conformation of a Kir K+ channel to prevent widening of the narrow collar. Unexpectedly, conduction was unimpaired in the locked channels. In parallel, we employed all-atom molecular dynamics to simulate K+ ions moving along the conduction pathway between the lower cavity and cytosol. During simulations, the constriction did not significantly widen. Instead, transient loss of some water molecules facilitated K+ permeation through the collar. The low free energy barrier to partial dehydration in the absence of conformational change indicates Kir channels are not gated by the canonical mechanism.The transition between conducting and non-conducting states of K+ channels has been explained by conformational changes at the intracellular entrance to the conduction pathway. Here authors demonstrate that control over K+ currents in Kir channels is not explained by the canonical pore-gating model, as conduction is not impaired by a constricted inner helix bundle.
The transition between conducting and non-conducting states of K+ channels has been explained by conformational changes at the intracellular entrance to the conduction pathway. Here authors demonstrate that control over K+ currents in Kir channels is not explained by the canonical pore-gating model, as conduction is not impaired by a constricted inner helix bundle.
ArticleNumber 3024
Author Hill, Adam P.
Gulbis, Jacqueline M.
Miller, David M.
Clarke, Oliver B.
Johnson, Paul
Laver, Derek
Burns, Christopher J.
Black, Katrina A.
Jin, Ruitao
He, Sitong
Windley, Monique
Robinson, Carol V.
Smith, Brian J.
Bolla, Jani R.
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SSID ssj0000391844
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Snippet The canonical mechanistic model explaining potassium channel gating is of a conformational change that alternately dilates and constricts a collar-like...
The transition between conducting and non-conducting states of K+ channels has been explained by conformational changes at the intracellular entrance to the...
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StartPage 3024
SubjectTerms 631/114
631/45/535
631/57
82/58
Channel gating
Channels
Computer simulation
Conduction
Conformation
Cytosol
Cytosol - chemistry
Cytosol - metabolism
Dehydration
Electric Conductivity
Electric Impedance
Free energy
G Protein-Coupled Inwardly-Rectifying Potassium Channels - chemistry
G Protein-Coupled Inwardly-Rectifying Potassium Channels - genetics
G Protein-Coupled Inwardly-Rectifying Potassium Channels - metabolism
Humanities and Social Sciences
Humans
Intracellular
Ion Transport
Ions
Ions - chemistry
Ions - metabolism
Model testing
Molecular dynamics
Molecular Dynamics Simulation
multidisciplinary
Potassium
Potassium - chemistry
Potassium - metabolism
Potassium channels
Potassium channels (inwardly-rectifying)
Potassium currents
Protein Conformation
Science
Science (multidisciplinary)
Water - metabolism
Water chemistry
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Title A constricted opening in Kir channels does not impede potassium conduction
URI https://link.springer.com/article/10.1038/s41467-020-16842-0
https://www.ncbi.nlm.nih.gov/pubmed/32541684
https://www.proquest.com/docview/2413234320
https://pubmed.ncbi.nlm.nih.gov/PMC7295778
https://doaj.org/article/1df537b978c34d8f93ba5ec69176a90f
Volume 11
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