The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria

Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the Chi...

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Published inNature communications Vol. 11; no. 1; pp. 79 - 12
Main Authors Liu, Chang, Zhou, Nan, Du, Meng-Xuan, Sun, Yu-Tong, Wang, Kai, Wang, Yu-Jing, Li, Dan-Hua, Yu, Hai-Ying, Song, Yuqin, Bai, Bing-Bing, Xin, Yuhua, Wu, Linhuan, Jiang, Cheng-Ying, Feng, Jie, Xiang, Hua, Zhou, Yuguang, Ma, Juncai, Wang, Jun, Liu, Hong-Wei, Liu, Shuang-Jiang
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 07.01.2020
Nature Publishing Group
Nature Portfolio
Subjects
147/143
45
45/22
45/23
45/77
631/326/2565/2134
631/326/2565/547
64/60
Animal models
Animals
Bacteria - classification
Bacteria - genetics
Bacteria - growth & development
Bacteria - isolation & purification
Biobanks
Cecum
Cecum - microbiology
China
Data collection
Databases, Factual
Digestive system
Digestive tract
Gastrointestinal Microbiome
Genome, Bacterial
Genomes
Humanities and Social Sciences
Intestinal microflora
Intestine
Male
Metagenomics
Mice - microbiology
Mice, Inbred C57BL
Microbiomes
Microorganisms
multidisciplinary
New species
Nomenclatures
Orthology
Phylogeny
Science
Science (multidisciplinary)
Strains (organisms)
China
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Abstract Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93–95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases. Here, the authors established and characterized the mouse gut microbial biobank (mGMB), which includes 244 strains and 126 species that enlarges previous mouse intestinal bacterial collections and represents a resource for studies using mouse models to investigate microbiome-associated health and disease.
AbstractList Abstract Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93–95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases.
Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93-95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases.
Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93–95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases. Here, the authors established and characterized the mouse gut microbial biobank (mGMB), which includes 244 strains and 126 species that enlarges previous mouse intestinal bacterial collections and represents a resource for studies using mouse models to investigate microbiome-associated health and disease.
Here, the authors established and characterized the mouse gut microbial biobank (mGMB), which includes 244 strains and 126 species that enlarges previous mouse intestinal bacterial collections and represents a resource for studies using mouse models to investigate microbiome-associated health and disease.
Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93-95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases.Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93-95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases.
Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the construction of a mouse gut microbial biobank (mGMB) that contains 126 species, represented by 244 strains that have been deposited in the China General Microorganism Culture Collection. We sequence and phenotypically characterize 77 potential new species and propose their nomenclatures. The mGMB includes 22 and 17 species that are significantly enriched in ob/ob and wild-type C57BL/6J mouse cecal samples, respectively. The genomes of the 126 species in the mGMB cover 52% of the metagenomic nonredundant gene catalog (sequence identity ≥ 60%) and represent 93–95% of the KEGG-Orthology-annotated functions of the sampled mouse GMs. The microbial and genome data assembled in the mGMB enlarges the taxonomic characterization of mouse GMs and represents a useful resource for studies of host-microbe interactions and of GM functions associated with host health and diseases.Here, the authors established and characterized the mouse gut microbial biobank (mGMB), which includes 244 strains and 126 species that enlarges previous mouse intestinal bacterial collections and represents a resource for studies using mouse models to investigate microbiome-associated health and disease.
ArticleNumber 79
Author Yu, Hai-Ying
Feng, Jie
Jiang, Cheng-Ying
Zhou, Nan
Sun, Yu-Tong
Wang, Jun
Wang, Yu-Jing
Wu, Linhuan
Liu, Hong-Wei
Liu, Shuang-Jiang
Song, Yuqin
Bai, Bing-Bing
Li, Dan-Hua
Xiang, Hua
Du, Meng-Xuan
Zhou, Yuguang
Ma, Juncai
Wang, Kai
Xin, Yuhua
Liu, Chang
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/31911589$$D View this record in MEDLINE/PubMed
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  publication-title: Nat. Methods
  doi: 10.1038/nmeth.2575
  contributor:
    fullname: DR Mende
– volume: 1
  start-page: 16131
  year: 2016
  ident: 13836_CR12
  publication-title: Nat. Microbiol.
  doi: 10.1038/nmicrobiol.2016.131
  contributor:
    fullname: I Lagkouvardos
– volume: 3
  start-page: 444
  year: 1949
  ident: 13836_CR29
  publication-title: J. Gen. Microbiol.
  doi: 10.1099/00221287-3-3-444
  contributor:
    fullname: RE Buchanan
SSID ssj0000391844
Score 2.5628333
Snippet Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we report the...
Abstract Mice are widely used as experimental models for gut microbiome (GM) studies, yet the majority of mouse GM members remain uncharacterized. Here, we...
Here, the authors established and characterized the mouse gut microbial biobank (mGMB), which includes 244 strains and 126 species that enlarges previous mouse...
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SubjectTerms 147/143
45
45/22
45/23
45/77
631/326/2565/2134
631/326/2565/547
64/60
Animal models
Animals
Bacteria - classification
Bacteria - genetics
Bacteria - growth & development
Bacteria - isolation & purification
Biobanks
Cecum
Cecum - microbiology
China
Data collection
Databases, Factual
Digestive system
Digestive tract
Gastrointestinal Microbiome
Genome, Bacterial
Genomes
Humanities and Social Sciences
Intestinal microflora
Intestine
Male
Metagenomics
Mice - microbiology
Mice, Inbred C57BL
Microbiomes
Microorganisms
multidisciplinary
New species
Nomenclatures
Orthology
Phylogeny
Science
Science (multidisciplinary)
Strains (organisms)
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Title The Mouse Gut Microbial Biobank expands the coverage of cultured bacteria
URI https://link.springer.com/article/10.1038/s41467-019-13836-5
https://www.ncbi.nlm.nih.gov/pubmed/31911589
https://www.proquest.com/docview/2342386208
https://www.proquest.com/docview/2334696712/abstract/
https://pubmed.ncbi.nlm.nih.gov/PMC6946648
https://doaj.org/article/0d1c96137f8a4fb6ad944fcdce5af8a8
Volume 11
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