The 3'-untranslated region of a rice alpha-amylase gene functions as a sugar-dependent mRNA stability determinant
In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of alpha-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown prev...
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| Published in | Proceedings of the National Academy of Sciences - PNAS Vol. 95; no. 11; pp. 6543 - 6547 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
United States
National Academy of Sciences of the United States of America
26.05.1998
National Acad Sciences National Academy of Sciences The National Academy of Sciences |
| Subjects | |
| Online Access | Get full text |
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| Abstract | In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of alpha-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of alpha-amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The alpha-amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of alpha Amy3 3' untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire alpha Amy3 3' UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire alpha Amy3 3' UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the alpha Amy3 3' UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the alpha-amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms |
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| AbstractList | In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of alpha-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of alpha-amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The alpha-amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of alpha Amy3 3' untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire alpha Amy3 3' UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire alpha Amy3 3' UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the alpha Amy3 3' UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the alpha-amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of α-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of α-amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The α-amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of α Amy3 3′ untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire α Amy3 3′ UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire α Amy3 3′ UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the α Amy3 3′ UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the α-amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms. In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and and utilization among tissues and organs. The sugar repression of alpha-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of alpha-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of alpha-amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The alpha-amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of alphaAmy3 3' untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire alphaAmy3 3' UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire alphaAmy3 3' UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the alphaAmy3 3' UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the alpha-amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms. In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of α-amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of α-amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The α-amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of α Amy3 3′ untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire α Amy3 3′ UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire α Amy3 3′ UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the α Amy3 3′ UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the α-amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms. In plants, sugar feedback regulation provides a mechanism for control of carbohydrate allocation and utilization among tissues and organs. The sugar repression of alpha -amylase gene expression in rice provides an ideal model for studying the mechanism of sugar feedback regulation. We have shown previously that sugar repression of alpha -amylase gene expression in rice suspension cells involves control of both transcription rate and mRNA stability. The alpha -amylase mRNA is significantly more stable in sucrose-starved cells than in sucrose-provided cells. To elucidate the mechanism of sugar-dependent mRNA turnover, we have examined the effect of alpha Amy3 3' untranslated region (UTR) on mRNA stability by functional analyses in transformed rice suspension cells. We found that the entire alpha Amy3 3' UTR and two of its subdomains can independently mediate sugar-dependent repression of reporter mRNA accumulation. Analysis of reporter mRNA half-lives demonstrated that the entire alpha Amy3 3' UTR and the two subdomains each functioned as a sugar-dependent destabilizing determinant in the turnover of mRNA. Nuclear run-on transcription analysis further confirmed that the alpha Amy3 3' UTR and the two subdomains did not affect the transcription rate of promoter. The identification of sequence elements in the alpha -amylase mRNA that dictate the differential stability has very important implications for the study of sugar-dependent mRNA decay mechanisms. |
| Author | Chan, M.T. (Academia Sinica, Taiwan, Republic of China.) Yu, S.M |
| AuthorAffiliation | Institute of Molecular Biology, Academia Sinica, Nankang, Taipei 11529, Taiwan, Republic of China |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/9601003$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1104/pp.106.4.1235 10.1007/BF00014596 10.1002/j.1460-2075.1989.tb08544.x 10.1139/g90-033 10.1128/mcb.12.7.2941-2948.1992 10.1091/mbc.6.9.1125 10.1016/0092-8674(88)90098-0 10.1007/BF00019558 10.1104/pp.97.2.832 10.1016/S0021-9258(18)54830-4 10.1007/BF00021529 10.1007/BF00233098 10.1111/j.1365-313X.1994.00655.x 10.1074/jbc.271.43.26998 10.1002/j.1460-2075.1996.tb00366.x 10.1007/BF00018557 10.1016/0378-1119(92)90212-8 10.1146/annurev.arplant.47.1.509 10.1007/BF00015978 10.1016/S0021-9258(17)32488-2 10.1111/j.1399-3054.1962.tb08052.x |
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| Copyright | Copyright 1993-1998 National Academy of Sciences Copyright National Academy of Sciences May 26, 1998 Copyright © 1998, The National Academy of Sciences 1998 |
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| References | Cao J (e_1_3_3_20_2) 1990 e_1_3_3_6_2 e_1_3_3_5_2 e_1_3_3_8_2 e_1_3_3_7_2 e_1_3_3_17_2 e_1_3_3_9_2 e_1_3_3_16_2 e_1_3_3_19_2 e_1_3_3_18_2 e_1_3_3_13_2 e_1_3_3_12_2 e_1_3_3_23_2 e_1_3_3_15_2 e_1_3_3_14_2 e_1_3_3_2_2 e_1_3_3_1_2 e_1_3_3_4_2 e_1_3_3_11_2 e_1_3_3_22_2 e_1_3_3_3_2 e_1_3_3_10_2 e_1_3_3_21_2 |
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| SubjectTerms | ALFA AMILASA ALPHA AMYLASE alpha-Amylases - genetics ALPHAAMY3 GENE ARN MENSAJERO ARN MESSAGER Base Sequence Biological Sciences Botany CELL CULTURE Cell growth Cell lines CELL SUSPENSIONS CULTIVO DE CELULAS CULTURE DE CELLULE DEGRADACION DEGRADATION DISPONIBILIDAD DE NUTRIENTES DISPONIBILITE D'ELEMENT NUTRITIF ESTABILIDAD GENE GENES Genes, Plant GENETIC TRANSFORMATION Half lives LUCIFERASE MESSENGER RNA Molecular Sequence Data NUTRIENT AVAILABILITY Oryza - genetics ORYZA SATIVA OXIDOREDUCTASES OXIDORREDUCTASAS OXYDOREDUCTASE Plant Proteins - genetics PROMOTERS REPORTER GENES Repression Ribonucleic acid Rice RNA RNA stability RNA, Messenger - genetics RNA, Messenger - metabolism SACCHAROSE STABILITE STABILITY STRUCTURAL GENES SUCROSA SUCROSE Sugar TRANSCRIPCION TRANSCRIPTION TRANSFORMACION GENETICA TRANSFORMATION GENETIQUE Transformed cell line Untranslated regions |
| Title | The 3'-untranslated region of a rice alpha-amylase gene functions as a sugar-dependent mRNA stability determinant |
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