Genetic control of root architectural plasticity in maize
Root architectural phenes have heritable and plastic responses, and genetic loci associated with stress and environmental plasticity are distinct from loci controlling phenotypic expression in water-stress and well-watered conditions. Abstract Root phenotypes regulate soil resource acquisition; howe...
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| Published in | Journal of experimental botany Vol. 71; no. 10; pp. 3185 - 3197 |
|---|---|
| Main Authors | , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
UK
Oxford University Press
30.05.2020
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Root architectural phenes have heritable and plastic responses, and genetic loci associated with stress and environmental plasticity are distinct from loci controlling phenotypic expression in water-stress and well-watered conditions.
Abstract
Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity. |
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| AbstractList | Root architectural phenes have heritable and plastic responses, and genetic loci associated with stress and environmental plasticity are distinct from loci controlling phenotypic expression in water-stress and well-watered conditions.
Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity. Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity. Root architectural phenes have heritable and plastic responses, and genetic loci associated with stress and environmental plasticity are distinct from loci controlling phenotypic expression in water-stress and well-watered conditions. Abstract Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity. Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity.Root phenotypes regulate soil resource acquisition; however, their genetic control and phenotypic plasticity are poorly understood. We hypothesized that the responses of root architectural phenes to water deficit (stress plasticity) and different environments (environmental plasticity) are under genetic control and that these loci are distinct. Root architectural phenes were phenotyped in the field using a large maize association panel with and without water deficit stress for three seasons in Arizona and without water deficit stress for four seasons in South Africa. All root phenes were plastic and varied in their plastic response. We identified candidate genes associated with stress and environmental plasticity and candidate genes associated with phenes in well-watered conditions in South Africa and in well-watered and water-stress conditions in Arizona. Few candidate genes for plasticity overlapped with those for phenes expressed under each condition. Our results suggest that phenotypic plasticity is highly quantitative, and plasticity loci are distinct from loci that control phene expression in stress and non-stress, which poses a challenge for breeding programs. To make these loci more accessible to the wider research community, we developed a public online resource that will allow for further experimental validation towards understanding the genetic control underlying phenotypic plasticity. |
| Author | Lynch, Jonathan P Schneider, Hannah M Nord, Eric A Brown, Kathleen M Klein, Stephanie P Warry, Andrew Hanlon, Meredith T Kaeppler, Shawn Bhosale, Rahul |
| AuthorAffiliation | 5 Lancaster University , UK 3 Advanced Data Analysis Centre, University of Nottingham , Nottingham, UK 1 Department of Plant Science, The Pennsylvania State University , University Park, PA, USA 2 Department of Agronomy, University of Wisconsin , Madison, WI, USA 4 Plant and Crop Sciences, School of Biosciences, University of Nottingham , Sutton Bonington, UK |
| AuthorAffiliation_xml | – name: 2 Department of Agronomy, University of Wisconsin , Madison, WI, USA – name: 4 Plant and Crop Sciences, School of Biosciences, University of Nottingham , Sutton Bonington, UK – name: 1 Department of Plant Science, The Pennsylvania State University , University Park, PA, USA – name: 5 Lancaster University , UK – name: 3 Advanced Data Analysis Centre, University of Nottingham , Nottingham, UK |
| Author_xml | – sequence: 1 givenname: Hannah M surname: Schneider fullname: Schneider, Hannah M organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA – sequence: 2 givenname: Stephanie P surname: Klein fullname: Klein, Stephanie P organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA – sequence: 3 givenname: Meredith T surname: Hanlon fullname: Hanlon, Meredith T organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA – sequence: 4 givenname: Eric A surname: Nord fullname: Nord, Eric A organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA – sequence: 5 givenname: Shawn surname: Kaeppler fullname: Kaeppler, Shawn organization: Department of Agronomy, University of Wisconsin, Madison, WI, USA – sequence: 6 givenname: Kathleen M orcidid: 0000-0002-4960-5292 surname: Brown fullname: Brown, Kathleen M organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA – sequence: 7 givenname: Andrew surname: Warry fullname: Warry, Andrew organization: Advanced Data Analysis Centre, University of Nottingham, Nottingham, UK – sequence: 8 givenname: Rahul surname: Bhosale fullname: Bhosale, Rahul organization: Plant and Crop Sciences, School of Biosciences, University of Nottingham, Sutton Bonington, UK – sequence: 9 givenname: Jonathan P orcidid: 0000-0002-7265-9790 surname: Lynch fullname: Lynch, Jonathan P email: jpl4@psu.edu organization: Department of Plant Science, The Pennsylvania State University, University Park, PA, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32080722$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/1637590$$D View this record in Osti.gov |
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| Keywords | plasticity water deficit stress Architecture association mapping maize root |
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| SubjectTerms | architecture Arizona association mapping BASIC BIOLOGICAL SCIENCES botany corn maize Phenotype phenotypic plasticity Plant Breeding Plant Roots - genetics plasticity Research Papers root soil South Africa water deficit stress water stress Zea mays - genetics |
| Title | Genetic control of root architectural plasticity in maize |
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