Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity

Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454‐pyrosequencing to analyse the soil...

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Published inMolecular ecology Vol. 26; no. 15; pp. 4085 - 4098
Main Authors Dassen, Sigrid, Cortois, Roeland, Martens, Henk, Hollander, Mattias, Kowalchuk, George A., Putten, Wim H., De Deyn, Gerlinde B.
Format Journal Article
LanguageEnglish
Published England Blackwell Publishing Ltd 01.08.2017
Subjects
Arbuscular mycorrhizal fungi
Arbuscular mycorrhizas
Archaea
Archaea - classification
Bacteria
Bacteria - classification
Biodiversity
Community composition
Community structure
Composition effects
Ecosystem
Flowers & plants
Fungi
Fungi - classification
Germany
grasses
Herbivores
Herbs
Legumes
Microbial activity
microbial communities
Microbial diversity
Mycorrhizae - classification
mycorrhizal fungi
Plant communities
Plant community diversity
Plant species
Plants (botany)
Plants - classification
protists
Rhizobia
roots
Soil analysis
Soil bacteria
Soil Microbiology
Soil microorganisms
Soil properties
Soils
species diversity
Species richness
α-diversity
β-diversity
Germany
plant community diversity
α-diversity
microbial diversity
arbuscular mycorrhizal fungi
rhizobia
β-diversity
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Abstract Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454‐pyrosequencing to analyse the soil microbial community composition in a long‐term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi (AMF), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FGs. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.
AbstractList Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454-pyrosequencing to analyse the soil microbial community composition in a long-term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi (AMF), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FGs. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.
Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group ( FG ) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454‐pyrosequencing to analyse the soil microbial community composition in a long‐term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi ( AMF ), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FG s. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.
Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454-pyrosequencing to analyse the soil microbial community composition in a long-term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi (AMF), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FGs. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group (FG) identity on microbial communities in the bulk soil are still not well understood. Here, we used 454-pyrosequencing to analyse the soil microbial community composition in a long-term biodiversity experiment at Jena, Germany. We examined responses of bacteria, fungi, archaea, and protists to plant species richness (communities varying from 1 to 60 sown species) and plant FG identity (grasses, legumes, small herbs, tall herbs) in bulk soil. We hypothesized that plant species richness and FG identity would alter microbial community composition and have a positive impact on microbial species richness. Plant species richness had a marginal positive effect on the richness of fungi, but we observed no such effect on bacteria, archaea and protists. Plant species richness also did not have a large impact on microbial community composition. Rather, abiotic soil properties partially explained the community composition of bacteria, fungi, arbuscular mycorrhizal fungi (AMF), archaea and protists. Plant FG richness did not impact microbial community composition; however, plant FG identity was more effective. Bacterial richness was highest in legume plots and lowest in small herb plots, and AMF and archaeal community composition in legume plant communities was distinct from that in communities composed of other plant FGs. We conclude that soil microbial community composition in bulk soil is influenced more by changes in plant FG composition and abiotic soil properties, than by changes in plant species richness per se.
Author Putten, Wim H.
Dassen, Sigrid
Kowalchuk, George A.
Cortois, Roeland
Hollander, Mattias
Martens, Henk
De Deyn, Gerlinde B.
Author_xml – sequence: 1
  givenname: Sigrid
  orcidid: 0000-0001-7265-8942
  surname: Dassen
  fullname: Dassen, Sigrid
  email: s.dassen@nioo.knaw.nl
  organization: Netherlands Institute of Ecology, NIOO KNAW
– sequence: 2
  givenname: Roeland
  surname: Cortois
  fullname: Cortois, Roeland
  organization: Netherlands Institute of Ecology, NIOO KNAW
– sequence: 3
  givenname: Henk
  surname: Martens
  fullname: Martens, Henk
  organization: Wageningen University
– sequence: 4
  givenname: Mattias
  surname: Hollander
  fullname: Hollander, Mattias
  organization: Netherlands Institute of Ecology, NIOO KNAW
– sequence: 5
  givenname: George A.
  surname: Kowalchuk
  fullname: Kowalchuk, George A.
  organization: Utrecht University
– sequence: 6
  givenname: Wim H.
  surname: Putten
  fullname: Putten, Wim H.
  organization: Wageningen University
– sequence: 7
  givenname: Gerlinde B.
  surname: De Deyn
  fullname: De Deyn, Gerlinde B.
  organization: Wageningen University
BackLink https://www.ncbi.nlm.nih.gov/pubmed/28489329$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright 2017 The Authors. Published by John Wiley & Sons Ltd.
2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.
Copyright © 2017 John Wiley & Sons Ltd
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Issue 15
Keywords plant community diversity
α-diversity
microbial diversity
arbuscular mycorrhizal fungi
rhizobia
β-diversity
Language English
License Attribution
http://creativecommons.org/licenses/by/4.0
2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.
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Snippet Plants are known to influence belowground microbial community structure along their roots, but the impacts of plant species richness and plant functional group...
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SubjectTerms Arbuscular mycorrhizal fungi
Arbuscular mycorrhizas
Archaea
Archaea - classification
Bacteria
Bacteria - classification
Biodiversity
Community composition
Community structure
Composition effects
Ecosystem
Flowers & plants
Fungi
Fungi - classification
Germany
grasses
Herbivores
Herbs
Legumes
Microbial activity
microbial communities
Microbial diversity
Mycorrhizae - classification
mycorrhizal fungi
Plant communities
Plant community diversity
Plant species
Plants (botany)
Plants - classification
protists
Rhizobia
roots
Soil analysis
Soil bacteria
Soil Microbiology
Soil microorganisms
Soil properties
Soils
species diversity
Species richness
α-diversity
β-diversity
Title Differential responses of soil bacteria, fungi, archaea and protists to plant species richness and plant functional group identity
URI https://onlinelibrary.wiley.com/doi/abs/10.1111%2Fmec.14175
https://www.ncbi.nlm.nih.gov/pubmed/28489329
https://www.proquest.com/docview/1923718587
https://www.proquest.com/docview/1899105291
https://www.proquest.com/docview/2000547791
http://www.narcis.nl/publication/RecordID/oai:library.wur.nl:wurpubs%2F523310
Volume 26
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