Variation in genomic landscape of clear cell renal cell carcinoma across Europe
The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different Eu...
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Published in | Nature communications Vol. 5; no. 1; p. 5135 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
29.10.2014
Nature Publishing Group |
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Abstract | The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications.
Renal cancer accounts for 2.4% of all adult cancers and its incidence is increasing worldwide. Here, the authors carry out genome and transcriptome sequencing of clear cell renal cell carcinomas (ccRCCs) and highlight genomic aberrations and biological pathways underlying ccRCC tumorigenesis. |
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AbstractList | The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications.
Renal cancer accounts for 2.4% of all adult cancers and its incidence is increasing worldwide. Here, the authors carry out genome and transcriptome sequencing of clear cell renal cell carcinomas (ccRCCs) and highlight genomic aberrations and biological pathways underlying ccRCC tumorigenesis. The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications. |
ArticleNumber | 5135 |
Author | Harnden, Patricia Abedi-Ardekani, Behnoush Selby, Peter J. Rung, Johan Renault, Victor Viksna, Juris Zarins, Andris Brazma, Alvis Jackson, Sharon M. Gut, Marta Seywright, Morag Brisuda, Antonin Foglio, Mario Bourque, Guillaume Scelo, Ghislaine Cambon-Thomsen, Anne Tubacher, Emmanuel Mates, Dana Jinga, Viorel Bourgey, Mathieu Artemov, Artem Lathrop, G. Mark Byrnes, Graham Mazur, Alexander Lepage, Pierre Moukeria, Anush Navratilova, Marie Gut, Ivo G. Egevad, Lars Zavadil, Jiri Vasudev, Naveen S. Celms, Edgars How-Kit, Alexandre Bihoreau, Marie-Therese Wozniak, Magdalena B. Holcatova, Ivana Opmanis, Martins Boulygina, Eugenia Greger, Liliana Daunay, Antoine Cartledge, Jon J. Zaridze, David Skryabin, Konstantin Tost, Jörg Foretova, Lenka Brennan, Paul Rastorguev, Sergey Sehmoun, Jeremy Arseneault, Madeleine Nedoluzhko, Artem Blanché, Hélène Su, Jing Prokhortchouk, Egor Letourneau, Louis Karimzadeh, Mehran Carreira, Christine Lechner, Doris Gonzàlez-Porta, Mar Heath, Simon Banks, Rosamonde E. Riazalhosseini, Yasser |
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Mark surname: Lathrop fullname: Lathrop, G. Mark email: tania.abouyounes@mail.mcgill.ca organization: Department of Human Genetics, McGill University, 1205 Dr Penfield Avenue, Montreal, Quebec, Canada H3A 1B1, Fondation Jean Dausset - Centre d'Etude du Polymorphisme Humain, Centre National de Génotypage, CEA - Institute de Génomique, Present address: McGill University and Genome Quebec Innovation Centre, 740 Doctor Penfield Avenue, Montreal, Quebec, Canada H3A 0G1 |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/25351205$$D View this record in MEDLINE/PubMed https://cea.hal.science/cea-04662035$$DView record in HAL http://kipublications.ki.se/Default.aspx?queryparsed=id:130053182$$DView record from Swedish Publication Index |
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ContentType | Journal Article |
Copyright | Springer Nature Limited 2014 Copyright Nature Publishing Group Oct 2014 Distributed under a Creative Commons Attribution 4.0 International License |
Copyright_xml | – notice: Springer Nature Limited 2014 – notice: Copyright Nature Publishing Group Oct 2014 – notice: Distributed under a Creative Commons Attribution 4.0 International License |
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DOI | 10.1038/ncomms6135 |
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Snippet | The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake... |
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Title | Variation in genomic landscape of clear cell renal cell carcinoma across Europe |
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