Variation in genomic landscape of clear cell renal cell carcinoma across Europe

The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different Eu...

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Published inNature communications Vol. 5; no. 1; p. 5135
Main Authors Scelo, Ghislaine, Riazalhosseini, Yasser, Greger, Liliana, Letourneau, Louis, Gonzàlez-Porta, Mar, Wozniak, Magdalena B., Bourgey, Mathieu, Harnden, Patricia, Egevad, Lars, Jackson, Sharon M., Karimzadeh, Mehran, Arseneault, Madeleine, Lepage, Pierre, How-Kit, Alexandre, Daunay, Antoine, Renault, Victor, Blanché, Hélène, Tubacher, Emmanuel, Sehmoun, Jeremy, Viksna, Juris, Celms, Edgars, Opmanis, Martins, Zarins, Andris, Vasudev, Naveen S., Seywright, Morag, Abedi-Ardekani, Behnoush, Carreira, Christine, Selby, Peter J., Cartledge, Jon J., Byrnes, Graham, Zavadil, Jiri, Su, Jing, Holcatova, Ivana, Brisuda, Antonin, Zaridze, David, Moukeria, Anush, Foretova, Lenka, Navratilova, Marie, Mates, Dana, Jinga, Viorel, Artemov, Artem, Nedoluzhko, Artem, Mazur, Alexander, Rastorguev, Sergey, Boulygina, Eugenia, Heath, Simon, Gut, Marta, Bihoreau, Marie-Therese, Lechner, Doris, Foglio, Mario, Gut, Ivo G., Skryabin, Konstantin, Prokhortchouk, Egor, Cambon-Thomsen, Anne, Rung, Johan, Bourque, Guillaume, Brennan, Paul, Tost, Jörg, Banks, Rosamonde E., Brazma, Alvis, Lathrop, G. Mark
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 29.10.2014
Nature Publishing Group
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Abstract The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications. Renal cancer accounts for 2.4% of all adult cancers and its incidence is increasing worldwide. Here, the authors carry out genome and transcriptome sequencing of clear cell renal cell carcinomas (ccRCCs) and highlight genomic aberrations and biological pathways underlying ccRCC tumorigenesis.
AbstractList The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications. Renal cancer accounts for 2.4% of all adult cancers and its incidence is increasing worldwide. Here, the authors carry out genome and transcriptome sequencing of clear cell renal cell carcinomas (ccRCCs) and highlight genomic aberrations and biological pathways underlying ccRCC tumorigenesis.
The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake whole-genome and transcriptome sequencing of clear cell RCC (ccRCC), the most common form of the disease, in patients from four different European countries with contrasting disease incidence to explore the underlying genomic architecture of RCC. Our findings support previous reports on frequent aberrations in the epigenetic machinery and PI3K/mTOR signalling, and uncover novel pathways and genes affected by recurrent mutations and abnormal transcriptome patterns including focal adhesion, components of extracellular matrix (ECM) and genes encoding FAT cadherins. Furthermore, a large majority of patients from Romania have an unexpected high frequency of A:T>T:A transversions, consistent with exposure to aristolochic acid (AA). These results show that the processes underlying ccRCC tumorigenesis may vary in different populations and suggest that AA may be an important ccRCC carcinogen in Romania, a finding with major public health implications.
ArticleNumber 5135
Author Harnden, Patricia
Abedi-Ardekani, Behnoush
Selby, Peter J.
Rung, Johan
Renault, Victor
Viksna, Juris
Zarins, Andris
Brazma, Alvis
Jackson, Sharon M.
Gut, Marta
Seywright, Morag
Brisuda, Antonin
Foglio, Mario
Bourque, Guillaume
Scelo, Ghislaine
Cambon-Thomsen, Anne
Tubacher, Emmanuel
Mates, Dana
Jinga, Viorel
Bourgey, Mathieu
Artemov, Artem
Lathrop, G. Mark
Byrnes, Graham
Mazur, Alexander
Lepage, Pierre
Moukeria, Anush
Navratilova, Marie
Gut, Ivo G.
Egevad, Lars
Zavadil, Jiri
Vasudev, Naveen S.
Celms, Edgars
How-Kit, Alexandre
Bihoreau, Marie-Therese
Wozniak, Magdalena B.
Holcatova, Ivana
Opmanis, Martins
Boulygina, Eugenia
Greger, Liliana
Daunay, Antoine
Cartledge, Jon J.
Zaridze, David
Skryabin, Konstantin
Tost, Jörg
Foretova, Lenka
Brennan, Paul
Rastorguev, Sergey
Sehmoun, Jeremy
Arseneault, Madeleine
Nedoluzhko, Artem
Blanché, Hélène
Su, Jing
Prokhortchouk, Egor
Letourneau, Louis
Karimzadeh, Mehran
Carreira, Christine
Lechner, Doris
Gonzàlez-Porta, Mar
Heath, Simon
Banks, Rosamonde E.
Riazalhosseini, Yasser
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SSID ssj0000391844
Score 2.564889
Snippet The incidence of renal cell carcinoma (RCC) is increasing worldwide, and its prevalence is particularly high in some parts of Central Europe. Here we undertake...
SourceID swepub
hal
proquest
crossref
pubmed
springer
SourceType Open Access Repository
Aggregation Database
Index Database
Publisher
StartPage 5135
SubjectTerms 631/208/69
631/67/2324
631/67/589/1588/1351
Adult
Aged
Aged, 80 and over
Biochemistry, Molecular Biology
Cancer research
Carcinoma, Renal Cell - genetics
Cohort Studies
Epidemiology
Epigenetics
Europe
Female
Focal Adhesions - metabolism
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Genetic Variation
Genome, Human - genetics
Genomes
Genomics
Hospitals
Humanities and Social Sciences
Humans
Kidney cancer
Life Sciences
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Mutation
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Oncogene Proteins, Fusion - genetics
Pathology
Phosphatidylinositol 3-Kinases - genetics
Public health
RNA Splicing - genetics
Science
Science (multidisciplinary)
Sequence Analysis, DNA
Signal Transduction - genetics
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Title Variation in genomic landscape of clear cell renal cell carcinoma across Europe
URI https://link.springer.com/article/10.1038/ncomms6135
https://www.ncbi.nlm.nih.gov/pubmed/25351205
https://www.proquest.com/docview/1617803461
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Volume 5
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