Molecular mechanisms of adaptive evolution in wild animals and plants

Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence. Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification, phenotypic convergence, and int...

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Published in	Science China. Life sciences Vol. 66; no. 3; pp. 453 - 495
Main Authors	Hu, Yibo, Wang, Xiaoping, Xu, Yongchao, Yang, Hui, Tong, Zeyu, Tian, Ran, Xu, Shaohua, Yu, Li, Guo, Yalong, Shi, Peng, Huang, Shuangquan, Yang, Guang, Shi, Suhua, Wei, Fuwen
Format	Journal Article
Language	English
Published	Beijing Science China Press 01.03.2023 Springer Nature B.V
Subjects	Adaptation, Physiological - genetics Animals, Wild - genetics Aquatic Organisms - genetics Biological Coevolution - genetics Biological Evolution Biomedical and Life Sciences Coevolution Computational Biology - methods Convergence Developmental biology Ecology - methods Ecology - trends Evolution Evolution & development Gene mapping Genome, Plant - genetics Genomes Life history Life Sciences Molecular modelling Parasitism Phenotype Predation Review molecular mechanism phenotype convergence adaptive trait coevolution convergent evolution genetic convergence parasitism adaptive evolution comparative genomics mutualism
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Abstract	Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence. Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification, phenotypic convergence, and inter-species interaction. As the genome sequences of more and more non-model organisms are becoming available, the focus of studies on molecular mechanisms of adaptive evolution has shifted from the candidate gene method to genetic mapping based on genome-wide scanning. In this study, we reviewed the latest research advances in wild animals and plants, focusing on adaptive traits, convergent evolution, and coevolution. Firstly, we focused on the adaptive evolution of morphological, behavioral, and physiological traits. Secondly, we reviewed the phenotypic convergences of life history traits and responding to environmental pressures, and the underlying molecular convergence mechanisms. Thirdly, we summarized the advances of coevolution, including the four main types: mutualism, parasitism, predation and competition. Overall, these latest advances greatly increase our understanding of the underlying molecular mechanisms for diverse adaptive traits and species interaction, demonstrating that the development of evolutionary biology has been greatly accelerated by multi-omics technologies. Finally, we highlighted the emerging trends and future prospects around the above three aspects of adaptive evolution.
AbstractList	Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence. Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification, phenotypic convergence, and inter-species interaction. As the genome sequences of more and more non-model organisms are becoming available, the focus of studies on molecular mechanisms of adaptive evolution has shifted from the candidate gene method to genetic mapping based on genome-wide scanning. In this study, we reviewed the latest research advances in wild animals and plants, focusing on adaptive traits, convergent evolution, and coevolution. Firstly, we focused on the adaptive evolution of morphological, behavioral, and physiological traits. Secondly, we reviewed the phenotypic convergences of life history traits and responding to environmental pressures, and the underlying molecular convergence mechanisms. Thirdly, we summarized the advances of coevolution, including the four main types: mutualism, parasitism, predation and competition. Overall, these latest advances greatly increase our understanding of the underlying molecular mechanisms for diverse adaptive traits and species interaction, demonstrating that the development of evolutionary biology has been greatly accelerated by multi-omics technologies. Finally, we highlighted the emerging trends and future prospects around the above three aspects of adaptive evolution. Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence. Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification, phenotypic convergence, and inter-species interaction. As the genome sequences of more and more non-model organisms are becoming available, the focus of studies on molecular mechanisms of adaptive evolution has shifted from the candidate gene method to genetic mapping based on genome-wide scanning. In this study, we reviewed the latest research advances in wild animals and plants, focusing on adaptive traits, convergent evolution, and coevolution. Firstly, we focused on the adaptive evolution of morphological, behavioral, and physiological traits. Secondly, we reviewed the phenotypic convergences of life history traits and responding to environmental pressures, and the underlying molecular convergence mechanisms. Thirdly, we summarized the advances of coevolution, including the four main types: mutualism, parasitism, predation and competition. Overall, these latest advances greatly increase our understanding of the underlying molecular mechanisms for diverse adaptive traits and species interaction, demonstrating that the development of evolutionary biology has been greatly accelerated by multi-omics technologies. Finally, we highlighted the emerging trends and future prospects around the above three aspects of adaptive evolution.Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence. Uncovering the molecular mechanisms of adaptive evolution is the key to understanding species diversification, phenotypic convergence, and inter-species interaction. As the genome sequences of more and more non-model organisms are becoming available, the focus of studies on molecular mechanisms of adaptive evolution has shifted from the candidate gene method to genetic mapping based on genome-wide scanning. In this study, we reviewed the latest research advances in wild animals and plants, focusing on adaptive traits, convergent evolution, and coevolution. Firstly, we focused on the adaptive evolution of morphological, behavioral, and physiological traits. Secondly, we reviewed the phenotypic convergences of life history traits and responding to environmental pressures, and the underlying molecular convergence mechanisms. Thirdly, we summarized the advances of coevolution, including the four main types: mutualism, parasitism, predation and competition. Overall, these latest advances greatly increase our understanding of the underlying molecular mechanisms for diverse adaptive traits and species interaction, demonstrating that the development of evolutionary biology has been greatly accelerated by multi-omics technologies. Finally, we highlighted the emerging trends and future prospects around the above three aspects of adaptive evolution.
Author	Shi, Peng Huang, Shuangquan Tong, Zeyu Shi, Suhua Yu, Li Wei, Fuwen Yang, Hui Hu, Yibo Tian, Ran Yang, Guang Guo, Yalong Xu, Yongchao Xu, Shaohua Wang, Xiaoping
Author_xml	– sequence: 1 givenname: Yibo surname: Hu fullname: Hu, Yibo email: ybhu@ioz.ac.cn organization: CAS Key Lab of Animal Ecology and Conservation Biology, Chinese Academy of Sciences – sequence: 2 givenname: Xiaoping surname: Wang fullname: Wang, Xiaoping organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, School of Life Sciences, Yunnan University – sequence: 3 givenname: Yongchao surname: Xu fullname: Xu, Yongchao organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences – sequence: 4 givenname: Hui surname: Yang fullname: Yang, Hui organization: State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences – sequence: 5 givenname: Zeyu surname: Tong fullname: Tong, Zeyu organization: Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University – sequence: 6 givenname: Ran surname: Tian fullname: Tian, Ran organization: College of Life Sciences, Nanjing Normal University – sequence: 7 givenname: Shaohua surname: Xu fullname: Xu, Shaohua organization: State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, School of Life Sciences, Sun Yat-sen University – sequence: 8 givenname: Li surname: Yu fullname: Yu, Li email: yuli@ynu.edu.cn organization: State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, School of Life Sciences, Yunnan University – sequence: 9 givenname: Yalong surname: Guo fullname: Guo, Yalong email: yalong.guo@ibcas.ac.cn organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences – sequence: 10 givenname: Peng surname: Shi fullname: Shi, Peng email: ship@mail.kiz.ac.cn organization: State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences – sequence: 11 givenname: Shuangquan surname: Huang fullname: Huang, Shuangquan email: hsq@ccnu.edu.cn organization: Institute of Evolution and Ecology, School of Life Sciences, Central China Normal University – sequence: 12 givenname: Guang surname: Yang fullname: Yang, Guang email: gyang@njnu.edu.cn organization: Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), College of Life Sciences, Nanjing Normal University – sequence: 13 givenname: Suhua surname: Shi fullname: Shi, Suhua email: lssssh@mail.sysu.edu.cn organization: State Key Laboratory of Biocontrol, Guangdong Key Lab of Plant Resources, School of Life Sciences, Sun Yat-sen University – sequence: 14 givenname: Fuwen surname: Wei fullname: Wei, Fuwen email: weifw@ioz.ac.cn organization: CAS Key Lab of Animal Ecology and Conservation Biology, Chinese Academy of Sciences, Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
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Snippet	Wild animals and plants have developed a variety of adaptive traits driven by adaptive evolution, an important strategy for species survival and persistence....
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SubjectTerms	Adaptation, Physiological - genetics Animals, Wild - genetics Aquatic Organisms - genetics Biological Coevolution - genetics Biological Evolution Biomedical and Life Sciences Coevolution Computational Biology - methods Convergence Developmental biology Ecology - methods Ecology - trends Evolution Evolution & development Gene mapping Genome, Plant - genetics Genomes Life history Life Sciences Molecular modelling Parasitism Phenotype Predation Review
Title	Molecular mechanisms of adaptive evolution in wild animals and plants
URI	https://link.springer.com/article/10.1007/s11427-022-2233-x https://www.ncbi.nlm.nih.gov/pubmed/36648611 https://www.proquest.com/docview/2790076324 https://www.proquest.com/docview/2766432322 https://pubmed.ncbi.nlm.nih.gov/PMC9843154
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