Transcriptomics and metabolomics reveal tolerance new mechanism of rice roots to Al stress
The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this...
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| Published in | Frontiers in genetics Vol. 13; p. 1063984 |
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| Main Authors | , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
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Frontiers Media S.A
10.01.2023
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| Abstract | The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes
Os02g0770800
and
Os06g0521900
may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants. |
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| AbstractList | The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes
Os02g0770800
and
Os06g0521900
may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants. The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes Os02g0770800 and Os06g0521900 may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants.The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes Os02g0770800 and Os06g0521900 may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants. The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes and may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants. The prevalence of soluble aluminum (Al) ions is one of the major limitations to crop production worldwide on acid soils. Therefore, understanding the Al tolerance mechanism of rice and applying Al tolerance functional genes in sensitive plants can significantly improve Al stress resistance. In this study, transcriptomics and metabolomics analyses were performed to reveal the mechanism of Al tolerance differences between two rice landraces (Al-tolerant genotype Shibanzhan (KR) and Al-sensitive genotype Hekedanuo (MR) with different Al tolerance. The results showed that DEG related to phenylpropanoid biosynthesis was highly enriched in KR and MR after Al stress, indicating that phenylpropanoid biosynthesis may be closely related to Al tolerance. E1.11.1.7 (peroxidase) was the most significant enzyme of phenylpropanoid biosynthesis in KR and MR under Al stress and is regulated by multiple genes. We further identified that two candidate genes Os02g0770800 and Os06g0521900 may be involved in the regulation of Al tolerance in rice. Our results not only reveal the resistance mechanism of rice to Al stress to some extent, but also provide a useful reference for the molecular mechanism of different effects of Al poisoning on plants. |
| Author | Cui, Zhibo Huang, Lixiang Wang, Jingbo Feng, Jing Su, Chang Xu, Hai Zhao, Minghui Jiang, Sixu Zhang, Wenzhong Jiang, Linlin Gu, Shuang |
| AuthorAffiliation | Rice Research Institute , Collaborative Innovation Center for Genetic Improvement and High Quality and Efficiency Production of Northeast Japonica Rice in China , Shenyang Agricultural University , Shenyang , China |
| AuthorAffiliation_xml | – name: Rice Research Institute , Collaborative Innovation Center for Genetic Improvement and High Quality and Efficiency Production of Northeast Japonica Rice in China , Shenyang Agricultural University , Shenyang , China |
| Author_xml | – sequence: 1 givenname: Jingbo surname: Wang fullname: Wang, Jingbo – sequence: 2 givenname: Chang surname: Su fullname: Su, Chang – sequence: 3 givenname: Zhibo surname: Cui fullname: Cui, Zhibo – sequence: 4 givenname: Lixiang surname: Huang fullname: Huang, Lixiang – sequence: 5 givenname: Shuang surname: Gu fullname: Gu, Shuang – sequence: 6 givenname: Sixu surname: Jiang fullname: Jiang, Sixu – sequence: 7 givenname: Jing surname: Feng fullname: Feng, Jing – sequence: 8 givenname: Hai surname: Xu fullname: Xu, Hai – sequence: 9 givenname: Wenzhong surname: Zhang fullname: Zhang, Wenzhong – sequence: 10 givenname: Linlin surname: Jiang fullname: Jiang, Linlin – sequence: 11 givenname: Minghui surname: Zhao fullname: Zhao, Minghui |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/36704350$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_3390_agriculture14081307 crossref_primary_10_3390_ijms251910440 crossref_primary_10_1271_kagakutoseibutsu_61_554 crossref_primary_10_1007_s11104_024_07151_2 crossref_primary_10_1016_j_plaphy_2024_109164 crossref_primary_10_1186_s40538_023_00508_2 crossref_primary_10_1016_j_plantsci_2024_112294 crossref_primary_10_3390_plants13131760 crossref_primary_10_1007_s11104_024_06745_0 crossref_primary_10_1186_s12870_024_05298_9 |
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| Copyright | Copyright © 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao. Copyright © 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao. 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao |
| Copyright_xml | – notice: Copyright © 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao. – notice: Copyright © 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao. 2023 Wang, Su, Cui, Huang, Gu, Jiang, Feng, Xu, Zhang, Jiang and Zhao |
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| Keywords | aluminum tolerance transcriptomics internal tolerance rice metabolomics |
| Language | English |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Reviewed by: Muhammad Aamir Manzoor, Anhui Agricultural University, China Peng Zhang, China National Rice Research Institute (CAAS), China Edited by: Dezhi Wu, Hunan Agricultural University, China Chongyun Fu, Guangdong Academy of Agricultural Sciences (GDAAS), China This article was submitted to Plant Genomics, a section of the journal Frontiers in Genetics |
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| Title | Transcriptomics and metabolomics reveal tolerance new mechanism of rice roots to Al stress |
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