DNA Microarray and Gene Ontology Enrichment Analysis Reveals That a Mutation in opsX Affects Virulence and Chemotaxis in Xanthomonas oryzae pv. Oryzae
Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA...
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| Published in | The plant pathology journal Vol. 32; no. 3; pp. 190 - 200 |
|---|---|
| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
Korea (South)
한국식물병리학회
01.06.2016
Korean Society of Plant Pathology Hanrimwon Publishing Company |
| Subjects | |
| Online Access | Get full text |
| ISSN | 1598-2254 2093-9280 |
| DOI | 10.5423/PPJ.OA.10.2015.0208 |
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| Abstract | Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<-2 log2 fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions. |
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| AbstractList | Xanthomonas oryzae
pv.
oryzae
(
Xoo
) causes bacterial leaf blight (BLB) in rice (
Oryza sativa
L.). In this study, we investigated the effect of a mutation in
opsX
(XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of
Xoo
. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<−2 log
2
fold changes) by the mutation in
opsX
. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (
opsX
::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the
opsX
mutant. Our findings revealed that mutation of
opsX
affects both virulence and bacterial motility. These results will help to improve our understanding of
Xoo
and provide insight into
Xoo
-rice interactions. Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<−2 log₂ fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions. Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<-2 log2 fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions.Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<-2 log2 fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions. Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosynthesis regulatory protein, on the virulence and bacterial chemotaxis of Xoo. We performed DNA microarray analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly downregulated (<-2 log2 fold changes) by the mutation in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the susceptible rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expression levels of these genes, including those related to flagella and chemotaxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions. Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in opsX (XOO1056), which encodes a saccharide biosyn-thesis regulatory protein, on the virulence and bac-terial chemotaxis of Xoo. We performed DNA micro-array analysis, which showed that 63 of 2,678 genes, including genes related to bacterial motility (flagellar and chemotaxis proteins) were significantly down-regulated (< –2 log2 fold changes) by the mu ta tion in opsX. Indeed, motility assays showed that the mutant strain was nonmotile on semisolid agar swarm plates. In addition, a mutant strain (opsX::Tn5) showed decreased virulence against the sus cep ti ble rice cultivar, IR24. Quantitative real-time RT-PCR reaction was performed to confirm the expession levels of these genes, including those related to flagella and chemo-taxis, in the opsX mutant. Our findings revealed that mutation of opsX affects both virulence and bacterial motility. These results will help to improve our understanding of Xoo and provide insight into Xoo-rice interactions. KCI Citation Count: 0 |
| Author | Young-jin Park Hong-il Kim |
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| Cites_doi | 10.1021/ac60111a017 10.1128/mr.57.3.655-682.1993 10.1016/j.micpath.2007.12.002 10.1046/j.1365-2958.1998.01063.x 10.1094/MPMI-8-0778 10.1099/00221287-144-6-1487 10.1016/0003-2697(82)90673-X 10.1146/annurev.py.33.090195.001133 10.1016/S0021-9258(19)37042-5 10.1093/nar/gki206 10.1128/JB.01294-06 10.1016/j.micres.2014.08.006 10.1046/j.1365-2958.1997.4281787.x 10.1111/j.1574-6968.2007.00909.x 10.1016/0048-4059(84)90045-6 10.1128/JB.180.7.1607-1617.1998 10.1128/jb.175.18.5839-5850.1993 10.1093/bioinformatics/bti610 10.1128/jb.176.8.2379-2385.1994 10.1016/0048-4059(83)90022-X 10.1128/aem.56.12.3855-3860.1990 |
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| Keywords | DNA microarray opsX virulence chemotaxis Xanthomonas oryzae pv. Oryzae Xanthomonas oryzae pv. oryzae |
| Language | English |
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| Snippet | Xanthomonas oryzae pv. oryzae (Xoo) causes bacterial leaf blight (BLB) in rice (Oryza sativa L.). In this study, we investigated the effect of a mutation in... Xanthomonas oryzae pv. oryzae ( Xoo ) causes bacterial leaf blight (BLB) in rice ( Oryza sativa L.). In this study, we investigated the effect of a mutation in... |
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| SubjectTerms | chemotaxis DNA microarray opsX virulence Xanthomonas oryzae pv. oryzae 농학 |
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| Title | DNA Microarray and Gene Ontology Enrichment Analysis Reveals That a Mutation in opsX Affects Virulence and Chemotaxis in Xanthomonas oryzae pv. Oryzae |
| URI | https://www.dbpia.co.kr/journal/articleDetail?nodeId=NODE11421502 https://www.ncbi.nlm.nih.gov/pubmed/27298594 https://www.proquest.com/docview/1797252812 https://pubmed.ncbi.nlm.nih.gov/PMC4892815 https://doaj.org/article/6ce93ca3b3ff45149ba53d9e60d87138 https://www.kci.go.kr/kciportal/ci/sereArticleSearch/ciSereArtiView.kci?sereArticleSearchBean.artiId=ART002109319 |
| Volume | 32 |
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| ispartofPNX | The Plant Pathology Journal, 2016, 32(3), , pp.190-200 |
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