XCEDE: An Extensible Schema for Biomedical Data
The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, t...
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| Published in | Neuroinformatics (Totowa, N.J.) Vol. 10; no. 1; pp. 19 - 32 |
|---|---|
| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
New York
Springer-Verlag
01.01.2012
Springer Nature B.V |
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| Online Access | Get full text |
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| Abstract | The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from
http://www.xcede.org/
. |
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| AbstractList | The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ .The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ . The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/. The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ . The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/.[PUBLICATION ABSTRACT] |
| Author | Aucoin, Nicole Marcus, Daniel S. Grethe, Jeffrey S. Keator, David B. Pieper, Steve Gadde, Syam |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/21479735$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_3389_fninf_2022_902452 crossref_primary_10_1371_journal_pbio_1002506 crossref_primary_10_1002_jmri_23572 crossref_primary_10_1080_15374416_2022_2051528 crossref_primary_10_1016_j_neuroimage_2013_05_094 crossref_primary_10_1016_j_neuroimage_2015_09_003 crossref_primary_10_1038_nn_3818 crossref_primary_10_1007_s11065_015_9293_x crossref_primary_10_3389_fnins_2019_00688 crossref_primary_10_1128_msystems_01151_21 crossref_primary_10_3389_fninf_2014_00052 crossref_primary_10_1186_1471_2164_15_S3_S3 crossref_primary_10_1038_sdata_2016_44 crossref_primary_10_1007_s00213_013_3290_7 crossref_primary_10_1016_j_neuroimage_2017_02_030 crossref_primary_10_2196_42289 crossref_primary_10_1007_s12021_013_9194_1 crossref_primary_10_3389_fninf_2017_00057 crossref_primary_10_1016_j_biopsych_2023_12_025 crossref_primary_10_3389_fninf_2021_766697 crossref_primary_10_3233_WEB_220089 crossref_primary_10_1007_s12021_015_9282_5 crossref_primary_10_1177_1460458215572924 crossref_primary_10_1016_j_neuroimage_2015_09_052 crossref_primary_10_1016_j_neuroimage_2013_05_024 crossref_primary_10_1038_sdata_2016_102 crossref_primary_10_5334_dsj_2017_045 crossref_primary_10_1016_j_neuroimage_2015_06_065 |
| Cites_doi | 10.3389/neuro.11.019.2009 10.1007/10704282_88 10.1007/BFb0100612 10.1016/S0896-6273(02)00569-X 10.1385/NI:5:1:11 10.1109/TITB.2008.917893 10.1385/NI:4:2:199 10.1109/MCISE.2003.1196306 10.1007/s12021-010-9078-6 10.1197/jamia.M1888 10.1016/0028-3932(71)90067-4 |
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| Copyright | Springer Science+Business Media, LLC 2011 Springer Science+Business Media, LLC 2012 |
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| Title | XCEDE: An Extensible Schema for Biomedical Data |
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