Variant calling in polyploids for population and quantitative genetics

• Published in: Applications in plant sciences Vol. 12; no. 4; pp. e11607 - n/a
• Main Author: Phillips, Alyssa R.
• Format: Journal Article
• Language: English
• Published: United States John Wiley & Sons, Inc 01.07.2024; Wiley
• Subjects: Algorithms; Chromosomes; Gene mapping; genome; genome assembly; Genomes; Genomics; genotype; Genotypes; Homology; mixed ploidy; Nucleotide sequence; nucleotide sequences; Polymorphism; Polyploidy; Population genetics; Population studies; Quantitative genetics; Software; species; uncertainty; variance; variant calling; whole genome sequence; whole genome sequence; population genetics; quantitative genetics; variant calling; polyploidy; mixed ploidy

Advancements in genome assembly and sequencing technology have made whole genome sequence (WGS) data and reference genomes accessible to study polyploid species. Compared to popular reduced‐representation sequencing approaches, the genome‐wide coverage and greater marker density provided by WGS data...