Genome-Wide Identification and Analysis of the WNK Kinase Gene Family in Upland Cotton

• Published in: Plants (Basel) Vol. 12; no. 23; p. 4036
• Main Authors: Zhang, Qi, Zhang, Caidie, Pan, Zhenyuan, Lin, Hairong, Li, Zhibo, Hou, Xinhe, Liu, Jinshan, Nie, Xinhui, Wu, Yuanlong
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI AG 01.11.2023
• Subjects: Abiotic stress; Abscisic acid; Analysis; Bias; biotic stress; Circadian rhythm; Circadian rhythms; Cotton; Environmental aspects; Gene expression; Genes; genome-wide; Genomes; Gossypium hirsutum; Kinases; Lysine; Myc protein; Open reading frames; Phylogenetics; Physiological aspects; Physiology; Plant genetics; Polyethylene glycol; Protein kinases; Proteins; Regulatory sequences; Stresses; Threonine; Transcription factors; upland cotton; WNK family protein; China; WNK family protein; genome-wide; upland cotton; biotic stress; gene expression; abiotic stress
• ISSN: 2223-7747; 2223-7747
• DOI: 10.3390/plants12234036

With-No-Lysine (WNK) kinases are a subfamily of serine/threonine protein kinases. WNKs are involved in plant abiotic stress response and circadian rhythms. However, members of the WNK subfamily and their responses to abiotic and biotic stresses in have not been reported. In this study, 26 were identified in . The gene structure, conserved motifs, and upstream open reading frames (uORFs) of were identified. Moreover, regulation is predicted to be regulated by -acting elements, such as ABA responsive element (ABRE), MBS, and MYC. Furthermore, transcription factors including MIKC_MADS, C2H2, TALE, bZIP, Dof, MYB, bHLH, and HD-ZIP are projected to play a regulatory role in . The expression patterns of under normal conditions and biotic and abiotic stresses were evaluated, and their expression was found to vary. The expression patterns of several were induced by infiltration with , suggesting that several may play important roles in the response of cotton to . Interestingly, a homoeologous expression bias within the was uncovered in upland cotton. Homoeologous expression bias within provides a framework to assist researchers and breeders in developing strategies to improve cotton traits by manipulating individual or multiple homeologs.