Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon
Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean an...
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| Published in | Science (American Association for the Advancement of Science) Vol. 331; no. 6014; pp. 214 - 217 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Washington, DC
American Association for the Advancement of Science
14.01.2011
The American Association for the Advancement of Science |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection. |
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| AbstractList | Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection.Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection. Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection. Despite large reductions in fisheries harvests, wild salmon stocks in Canada are suffering high levels of mortality before they manage to reproduce--40 to 95% of fish are dying each year en route to their spawning grounds. Miller et al. (p. 214) have found a consistent association between fish mortality and a specific genomic expression signal. The past 10 years have seen unprecedentedly warm river temperatures, and salmon have died in greatest numbers in "hotspots" along the river system, possibly as a result of poor oxygen availability and disease, with some stocks being more severely affected than others. Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection. [PUBLICATION ABSTRACT] High mortality of sockeye salmon in the Fraser River is associated with signals of metabolic and immune stress. Long-term population viability of Fraser River sockeye salmon ( Oncorhynchus nerka ) is threatened by unusually high levels of mortality as they swim to their spawning areas before they spawn. Functional genomic studies on biopsied gill tissue from tagged wild adults that were tracked through ocean and river environments revealed physiological profiles predictive of successful migration and spawning. We identified a common genomic profile that was correlated with survival in each study. In ocean-tagged fish, a mortality-related genomic signature was associated with a 13.5-fold greater chance of dying en route. In river-tagged fish, the same genomic signature was associated with a 50% increase in mortality before reaching the spawning grounds in one of three stocks tested. At the spawning grounds, the same signature was associated with 3.7-fold greater odds of dying without spawning. Functional analysis raises the possibility that the mortality-related signature reflects a viral infection. |
| Author | Curtis, Janelle M.R Donnison, Louise Sierocinski, Thomas Hinch, Scott G Hruska, Kimberly A Hammill, Edd English, Karl K Patterson, David A Miller, Kristina M Li, Shaorong Farrell, Anthony P Kaukinen, Karia H Ginther, Norma Pavlidis, Paul Cooke, Steven J |
| Author_xml | – sequence: 1 fullname: Miller, Kristina M – sequence: 2 fullname: Li, Shaorong – sequence: 3 fullname: Kaukinen, Karia H – sequence: 4 fullname: Ginther, Norma – sequence: 5 fullname: Hammill, Edd – sequence: 6 fullname: Curtis, Janelle M.R – sequence: 7 fullname: Patterson, David A – sequence: 8 fullname: Sierocinski, Thomas – sequence: 9 fullname: Donnison, Louise – sequence: 10 fullname: Pavlidis, Paul – sequence: 11 fullname: Hinch, Scott G – sequence: 12 fullname: Hruska, Kimberly A – sequence: 13 fullname: Cooke, Steven J – sequence: 14 fullname: English, Karl K – sequence: 15 fullname: Farrell, Anthony P |
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| Keywords | Infection Virus Oncorhynchus nerka Vertebrata Correlation Pisces Mortality Animal migration Genome Survival |
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| Snippet | Long-term population viability of Fraser River sockeye salmon (Oncorhynchus nerka) is threatened by unusually high levels of mortality as they swim to their... High mortality of sockeye salmon in the Fraser River is associated with signals of metabolic and immune stress. Long-term population viability of Fraser River... Despite large reductions in fisheries harvests, wild salmon stocks in Canada are suffering high levels of mortality before they manage to reproduce--40 to 95%... |
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| SubjectTerms | adults Agnatha. Pisces Animal and plant ecology Animal Migration Animal migration behavior Animal populations Animal reproduction Animal, plant and microbial ecology Animals Attrition (Research Studies) Biological and medical sciences Canada Cytogenetics Demecology Female Fish Fish Diseases - genetics Fish Diseases - immunology Fish Diseases - mortality Fish harvest Fish migration Fresh water Freshwater fishes Fundamental and applied biological sciences. Psychology Gene Expression Gene Expression Profiling Genetics of eukaryotes. Biological and molecular evolution Genome Genomics Gills Grounds Male Marine fishes Migration Mortality Ocean fisheries Oceans Oligonucleotide Array Sequence Analysis Oncorhynchus nerka Pacific Ocean Population Dynamics population viability Principal Component Analysis Raw materials Remote Sensing Technology Reproduction Rivers Salmon Salmon - genetics Salmon - physiology Signatures Spawning Spawning grounds Stress, Physiological Survival Analysis Tagging Vertebrata Virus Diseases - genetics Virus Diseases - immunology Virus Diseases - mortality Virus Diseases - veterinary |
| Title | Genomic Signatures Predict Migration and Spawning Failure in Wild Canadian Salmon |
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