Allelic variation of row type gene Vrs1 in barley and implication of the functional divergence

Domesticated barleys produce either two- or six- rowed spikes, whereas their immediate wild ancestor, wild barley, is monomorphic for the two-rowed type. The six-rowed spike is a recessive character, conditioned by a major gene at the vrs1 locus. The wild-type (two-rowed) gene includes a homeodomain...

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Published inBreeding Science Vol. 59; no. 5; pp. 621 - 628
Main Authors Saisho, D., Okayama Univ., Kurashiki (Japan). Research Inst. for Bioresources, Pourkheirandish, M, Kanamori, H, Matsumoto, T, Komatsuda, T
Format Journal Article
LanguageEnglish
Published Tokyo Japanese Society of Breeding 2009
Japan Science and Technology Agency
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Abstract Domesticated barleys produce either two- or six- rowed spikes, whereas their immediate wild ancestor, wild barley, is monomorphic for the two-rowed type. The six-rowed spike is a recessive character, conditioned by a major gene at the vrs1 locus. The wild-type (two-rowed) gene includes a homeodomain-leucine zipper I (HD-Zip I) sequence (HvHox1). The correspondence between peptide sequence and some spike variants was studied by re-sequencing the HvHox1 sequence across a large sample of both wild and domesticated accessions.
AbstractList Domesticated barleys produce either two- or six- rowed spikes, whereas their immediate wild ancestor, wild barley, is monomorphic for the two-rowed type. The six-rowed spike is a recessive character, conditioned by a major gene at the vrs1 locus. The wild-type (two-rowed) gene includes a homeodomain-leucine zipper I (HD-Zip I) sequence (HvHox1). The correspondence between peptide sequence and some spike variants was studied by re-sequencing the HvHox1 sequence across a large sample of both wild and domesticated accessions.
Author Saisho, D., Okayama Univ., Kurashiki (Japan). Research Inst. for Bioresources
Matsumoto, T
Pourkheirandish, M
Kanamori, H
Komatsuda, T
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Cites_doi 10.1073/pnas.0608580104
10.1093/bioinformatics/btg359
10.1270/jsbbs1951.25.334
10.1007/s00122-008-0926-9
10.1093/aob/mcm139
10.1270/jsbbs1951.38.72
10.1007/s10142-009-0134-y
10.7312/nei-92038
10.2134/agronj1949.00021962004100070009x
10.1007/PL00002919
10.1534/genetics.107.079491
10.1016/j.tplants.2007.08.003
10.1270/jsbbs.56.243
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References Sameri, M., K. Takeda and T. Komatsuda (2006) Quantitative trait loci controlling agronomic traits in recombinant inbred lines from a cross of Oriental- and Occidental-type barley cultivars. Breed. Sci. 56: 243–252.
Woodward, R.W. (1949) The inheritance of fertility in the lateral florets of the four barley groups. Agron. J. 41: 317–322.
Komatsuda, T., M. Pourkheirandish, C.F. He, P. Azhaguvel, H. Kanamori, D. Perovic, N. Stein, A. Graner, T. Wicker, A. Tagiri et al. (2007) Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc. Natl. Acad. Sci. USA 104: 1424–1429.
Marquez-Cedello, L.A., P. Hayes, A. Kleinhofs, W.G. Legge, B.G. Rossnagel, K. Sato, S.E. Ullrich, D.M. Wesenberg, The North American Barley Genome Mapping Project (2001) QTL analysis of agronomic traits in barley based on the doubled haploid progeny of two elite North American varieties representing different germplasm groups. Theor. Appl. Genet. 103: 625–637.
Takeda, K. and W. Saito (1988) Inheritance of the percentage of missing lateral florets in ‘Irregurale’ barley. Japan J. Breed. 38: 72–80 (in Japanese with English summary p. 80).
Ariel, F.D., P.A. Manavella, C.A. Dezar and R.L. Chan (2007) The true story of the HD-Zip family. Trends Plant Sci. 12: 419–426.
Takahashi, R., J. Hayashi and I. Moriya (1975) Studies on barley breeding with two-rowed and six-rowed varietal crosses. I. Effects of the genes V and v on agronomic characters. Japan. J. Breed. 25: 334–342 (in Japanese with English summary p. 342).
Saisho, D. and M.D. Purugganan (2007) Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics 177: 1765–1776.
Sameri, M., S. Nakamura, S.K. Nair, K. Takeda and T. Komatsuda (2009) A quantitative trait locus for reduced culm internode length in barley segregates as a Mendelian gene. Theor. Appl. Genet. 118: 643–652.
Pourkheirandish, M. and T. Komatsuda (2007) The importance of barley genetics and domestication in a global perspective. Ann. Bot. 100: 999–1008.
Bothmer, R.v. and N. Jacobsen (1985) Origin, Taxonomy, and Related species In: Rasmusson, D. (ed.) Barley, Agronomy Monograph No. 26, ASA-CSSA-SSSA, Madison, WI, pp. 19–56.
Sakuma, S., M. Pourkheirandish, T. Matsumoto, T. Koba and T. Komatsuda (2009) Duplication of a well-conserved homeodomain-leucine zipper transcription factor gene in barley generates a copy with more specific functions. Funct. Integr. Genomics. DOI 10.1007/s10142-009-0134-y
Takahashi, R. and Y. Tomihisa (1970) Genetic approach to the origin of two wild forms of barley, lagunculiforme Bacht. and proskowetzii Nabelek (Hordeum spontaneum C. Koch emend. Bacht.). Barley Genetics II: 51–62.
Rozas, J., J.C. Sanchez-DelBarrio, X. Messeguer and R. Rozas (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496–2497.
Lundqvist, U., J.D. Franckowiak and T. Konishi (1997) New and revised description of barley genes. Barley Genet. Newletter 26: 22–516.
Matsuoka, Y., S. Takumi and T. Kawahara (2008) Flowering time diversification and dispersal in central Eurasian wild wheat Aegilops tauschii Coss.: genealogical and ecological framework. PLoS One 3: e3138.
Knüpffer, H. and T.v. Hintum (2003) Summarised diversity—the Barley Core Collection. In: Bothmer, R.v., T.v. Hintum, H. Knüpffer and K. Sato (eds.) Diversity in Barley (Hordeum vulgare), Elsevier, Amsterdam, pp. 259–267.
Nei, M. (1987) Molecular Evolutionary Genetics. Columbia Univ Press, New York.
Saisho, D., M. Pourkheirandish and T. Komatsuda (2009) Evolutionary process of six-rowed spike in domesticated barley. 6th International Triticeae Symposium, p. 20.
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SubjectTerms ADN
barley
CORRELACION GENETICA
CORRELATION GENETIQUE
DNA
EPILLET
ESPIGUILLA
GENE
GENES
GENETIC CORRELATION
GENETIC VARIATION
HORDEUM VULGARE
http://www.fao.org/aos/agrovoc#c_15975
http://www.fao.org/aos/agrovoc#c_2347
http://www.fao.org/aos/agrovoc#c_27583
http://www.fao.org/aos/agrovoc#c_29796
http://www.fao.org/aos/agrovoc#c_3214
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http://www.fao.org/aos/agrovoc#c_6259
http://www.fao.org/aos/agrovoc#c_7301
MUTANT
MUTANTES
MUTANTS
NUCLEOTIDE SEQUENCE
protein motif
PROTEINAS
PROTEINE
PROTEINS
row type variation
SECUENCIA NUCLEOTIDICA
SEQUENCE NUCLEOTIDIQUE
SPIKELETS
VARIACION GENETICA
VARIATION GENETIQUE
vrs1
Title Allelic variation of row type gene Vrs1 in barley and implication of the functional divergence
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