Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma

Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding can...

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Published inCell reports (Cambridge) Vol. 42; no. 8; p. 112879
Main Authors Rosenberg, Miriam I., Greenstein, Erez, Buchkovich, Martin, Peres, Ayelet, Santoni-Rugiu, Eric, Yang, Lei, Mikl, Martin, Vaksman, Zalman, Gibbs, David L., Reshef, Dan, Salovin, Amy, Irwin, Meredith S., Naranjo, Arlene, Ulitsky, Igor, de Alarcon, Pedro A., Matthay, Katherine K., Weigman, Victor, Yaari, Gur, Panzer, Jessica A., Friedman, Nir, Maris, John M.
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 29.08.2023
Elsevier
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Online AccessGet full text
ISSN2211-1247
2211-1247
DOI10.1016/j.celrep.2023.112879

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Abstract Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB∗01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology. [Display omitted] •OMAS-associated neuroblastomas contain more B and T cells than control neuroblastomas•OMAS-associated neuroblastoma B and T cell repertoires are diverse, with small clones•Tertiary lymphoid structures are enriched in OMAS-associated neuroblastomas•Gene expression correlated to neurological symptom severity nominates autoantigens Rosenberg et al. sought features of the systemic immune response underlying improved tumor outcomes and neurological dysfunction in patients with opsoclonus myoclonus ataxia syndrome (OMAS), an autoimmune disease caused by neuroblastoma. Diverse B and T cell lymphocytic infiltration organized in enriched tertiary lymphoid structures predominate in OMAS-associated tumors.
AbstractList Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB∗01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology.
Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB*01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology. Rosenberg et al. sought features of the systemic immune response underlying improved tumor outcomes and neurological dysfunction in patients with opsoclonus myoclonus ataxia syndrome (OMAS), an autoimmune disease caused by neuroblastoma. Diverse B and T cell lymphocytic infiltration organized in enriched tertiary lymphoid structures predominate in OMAS-associated tumors.
Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB∗01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology.Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB∗01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology.
Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB 01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology.
Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia syndrome (OMAS), a paraneoplastic disease characterized by cerebellar and brainstem-directed autoimmunity but typically with outstanding cancer-related outcomes. We compared tumor transcriptomes and tumor-infiltrating T and B cell repertoires from 38 OMAS subjects with neuroblastoma to 26 non-OMAS-associated neuroblastomas. We found greater B and T cell infiltration in OMAS-associated tumors compared to controls and showed that both were polyclonal expansions. Tertiary lymphoid structures (TLSs) were enriched in OMAS-associated tumors. We identified significant enrichment of the major histocompatibility complex (MHC) class II allele HLA-DOB∗01:01 in OMAS patients. OMAS severity scores were associated with the expression of several candidate autoimmune genes. We propose a model in which polyclonal auto-reactive B lymphocytes act as antigen-presenting cells and drive TLS formation, thereby supporting both sustained polyclonal T cell-mediated anti-tumor immunity and paraneoplastic OMAS neuropathology. [Display omitted] •OMAS-associated neuroblastomas contain more B and T cells than control neuroblastomas•OMAS-associated neuroblastoma B and T cell repertoires are diverse, with small clones•Tertiary lymphoid structures are enriched in OMAS-associated neuroblastomas•Gene expression correlated to neurological symptom severity nominates autoantigens Rosenberg et al. sought features of the systemic immune response underlying improved tumor outcomes and neurological dysfunction in patients with opsoclonus myoclonus ataxia syndrome (OMAS), an autoimmune disease caused by neuroblastoma. Diverse B and T cell lymphocytic infiltration organized in enriched tertiary lymphoid structures predominate in OMAS-associated tumors.
ArticleNumber 112879
Author Irwin, Meredith S.
Naranjo, Arlene
Ulitsky, Igor
Reshef, Dan
de Alarcon, Pedro A.
Greenstein, Erez
Gibbs, David L.
Yang, Lei
Vaksman, Zalman
Mikl, Martin
Rosenberg, Miriam I.
Matthay, Katherine K.
Yaari, Gur
Maris, John M.
Friedman, Nir
Peres, Ayelet
Panzer, Jessica A.
Buchkovich, Martin
Santoni-Rugiu, Eric
Salovin, Amy
Weigman, Victor
AuthorAffiliation 11 Division of Neurology, Department of Pediatrics, Children’s Hospital of Philadelphia, Philadelphia, PA 19104, USA
4 Bio-engineering, Faculty of Engineering, Bar Ilan University, Ramat Gan, Israel
1 Hebrew University of Jerusalem, Edmond Safra Campus, Givat Ram, Jerusalem 91904, Israel
6 Department of Pathology, Rigshospitalet, Copenhagen University Hospital and Department of Clinical Medicine, University of Copenhagen, 2100 Copenhagen, Denmark
13 Department of Biostatistics, University of Florida, Children’s Oncology Group Statistics & Data Center, Gainesville, FL, USA
3 Q2 Solutions, Durham, NC, USA
18 These authors contributed equally
8 Department of Human Biology, Faculty of Natural Sciences, University of Haifa, Mount Carmel, Haifa 31905, Israel
15 Department of Pediatrics, Hematology/Oncology, University of Illinois College of Medicine Peoria, Peoria, IL 61605, USA
10 Institute for Systems Biology, 401 Terry Avenue N, Seattle, WA 98109, USA
2 Department of Immunology, Weizmann Institute
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Cites_doi 10.1101/gr.1239303
10.1093/brain/awm038
10.1038/ncomms11153
10.1002/mpo.1138
10.1002/mpo.1139
10.1056/NEJMra023009
10.1038/nri.2017.143
10.1016/j.it.2015.09.006
10.1038/nature22383
10.1097/01.mph.0000212991.64435.f0
10.1016/j.coi.2020.05.007
10.1212/NXI.0000000000000419
10.1093/bioinformatics/bts635
10.1002/1097-0142(196511)18:11<1399::AID-CNCR2820181104>3.0.CO;2-R
10.1093/rheumatology/keu163
10.1186/1471-2105-14-128
10.1111/j.1600-065X.2012.01124.x
10.3389/fendo.2019.00471
10.1038/nmeth.3337
10.1016/S2352-4642(17)30130-X
10.1038/s41598-019-50455-y
10.1093/bioinformatics/btt087
10.4049/jimmunol.176.12.7676
10.1016/0092-8674(86)90509-X
10.1158/1541-7786.MCR-18-0601
10.1172/JCI31405
10.1136/jnnp.2003.034447
10.1186/s12864-017-3827-y
10.1016/S1474-4422(19)30244-3
10.1038/351485a0
10.1111/pin.12591
10.1002/(SICI)1097-0142(19990715)86:2<364::AID-CNCR21>3.0.CO;2-7
10.1093/nar/gkv007
10.1126/sciimmunol.abb9726
10.1182/blood-2009-04-217604
10.1038/s41598-018-25294-y
10.1097/MPH.0000000000000976
10.3390/cancers12030620
10.1126/scitranslmed.aaw0044
10.1038/ncpneuro0493
10.1038/s41467-020-18987-4
10.1093/bioinformatics/btv359
10.4049/jimmunol.1001323
10.1186/s13059-019-1842-9
10.1038/s41568-019-0144-6
10.18632/oncotarget.323
10.1093/bioinformatics/bty560
10.1111/imm.12554
10.1038/ncomms3680
10.1016/j.oraloncology.2021.105348
10.1002/1097-0142(197602)37:2<846::AID-CNCR2820370233>3.0.CO;2-L
10.1186/gb-2010-11-10-r106
10.1080/02664763.2018.1454894
10.3109/00313027509092702
10.1212/WNL.0000000000006035
10.1016/j.mayocp.2019.02.003
10.3389/fimmu.2016.00608
10.1158/0008-5472.CAN-21-0691
10.18632/oncotarget.22435
10.1186/s13073-017-0473-6
10.1016/S0190-9622(83)70182-9
10.1002/pbc.27776
10.1007/s00428-002-0747-1
10.1093/bioinformatics/btp616
10.1136/jnnp.25.3.271
10.1038/s41598-017-08935-6
10.1038/s41586-019-1922-8
10.1093/nar/gkt382
10.1055/s-0029-1237723
10.1158/0008-5472.CAN-10-3810
10.1038/nmeth.4463
10.1038/ng.3822
10.1002/art.22939
10.4049/jimmunol.1900620
10.1111/imr.12405
10.3389/fimmu.2021.674565
10.1371/journal.pone.0012776
10.1038/s41586-018-0130-2
10.1038/s41467-021-23355-x
10.4049/jimmunol.1500792
10.1016/j.immuni.2018.03.023
10.1093/bioinformatics/btz481
10.1016/j.celrep.2019.04.098
10.1084/jem.20130699
10.1038/ng.2529
10.3389/fimmu.2018.01952
10.1038/s41467-021-24343-x
10.1038/s41586-019-1914-8
10.3389/fneur.2021.642800
10.1016/j.immuni.2021.02.014
10.1016/j.cell.2018.03.022
10.1016/j.jneuroim.2011.12.014
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Issue 8
Keywords CP: Immunology
repertoires
myoclonus
ataxia
autoimmunity
CP: Cancer
neuroblastoma
immune profiling
TCRB
opsoclonus
IgH
paraneoplastic
Language English
License This is an open access article under the CC BY-NC-ND license.
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AUTHOR CONTRIBUTIONS
M.I.R. designed the project with J.A.P. and led the project; performed tumor imaging, data analysis, and synthesis; and wrote the manuscript with contributions from all authors. E.G. led TCR analysis with contributions from D.R. and supervision by N.F. M.B. carried out bioinformatics analysis, including differential expression, SNP analysis, immune landscape signature, and HLA analyses, and implementation of immune subtype pipeline. L.Y. contributed network analyses, statistical analysis, and bioinformatics. Z.V. carried out transcriptome analysis. M.M. carried out machine learning experiments (XGBoost) and contributed statistical and bioinformatic analysis. A.P. led BCR analysis under the supervision of G.Y. E.S.-R. carried out the histopathological scoring and immunohistochemical phenotyping. A.S. contributed to immunohistochemical analyses. D.L.G. carried out additional immune subtype analysis and bioinformatics. I.U. contributed to bioinformatic analysis. A.N., M.S.I., K.K.M., and P.A.d.A. led the clinical trial from which samples for this study were obtained. V.W. supervised transcriptome analysis and HLA analysis and design and provided bioinformatics support. J.M.M. supervised the project.
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References De Grandis, Parodi, Conte, Angelini, Battaglia, Gandolfo, Pessagno, Pistoia, Mitchell, Pike (bib39) 2009; 40
Ehrlich (bib1) 1908
Pranzatelli, Tate, McGee, Travelstead, Ransohoff, Ness, Colliver (bib74) 2012; 243
Robinson, McCarthy, Smyth (bib85) 2010; 26
Shannon, Markiel, Ozier, Baliga, Wang, Ramage, Amin, Schwikowski, Ideker (bib89) 2003; 13
Pipi, Nayar, Gardner, Colafrancesco, Smith, Barone (bib75) 2018; 9
Welsh, Sadegh-Nasseri (bib80) 2020; 64
Hoadley, Yau, Hinoue, Wolf, Lazar, Drill, Shen, Taylor, Cherniack, Thorsson (bib93) 2018; 173
Greiff, Miho, Menzel, Reddy (bib48) 2015; 36
Helmink, Reddy, Gao, Zhang, Basar, Thakur, Yizhak, Sade-Feldman, Blando, Han (bib55) 2020; 577
Carlson, Emerson, Sherwood, Desmarais, Chung, Parsons, Steen, LaMadrid-Herrmannsfeldt, Williamson, Livingston (bib45) 2013; 4
Sansing, Tüzün, Ko, Baccon, Lynch, Dalmau (bib13) 2007; 3
Shlomchik, Weisel (bib76) 2012; 247
Kulik, Laskowski, Renner, Woolaver, Zhang, Lyubchenko, You, Thurman, Holers (bib25) 2019; 203
Sautès-Fridman, Petitprez, Calderaro, Fridman (bib58) 2019; 19
Shimada, Ambros, Dehner, Hata, Joshi, Roald, Stram, Gerbing, Lukens, Matthay, Castleberry (bib98) 1999; 86
Leng, Dawson, Thomson, Ruotti, Rissman, Smits, Haag, Gould, Stewart, Kendziorski (bib86) 2013; 29
Dandekar, Wijesuriya, Geiger, Hamm, Mathern, Owens (bib66) 2016; 7
Freed, Aldana, Weber, Edwards (bib91) 2017
Dieu-Nosjean, Giraldo, Kaplon, Germain, Fridman, Sautès-Fridman (bib56) 2016; 271
Schuierer, Carbone, Knehr, Petitjean, Fernandez, Sultan, Roma (bib22) 2017; 18
Chen, Zhang, Varambally, Creighton (bib34) 2019; 17
Jones, Jones (bib68) 2016; 147
Dendrou, Petersen, Rossjohn, Fugger (bib41) 2018; 18
Wilbur, Yea, Licht, Irwin, Yeh (bib52) 2019; 66
Hero, Clement, Øra, Pierron, Lapouble, Theissen, Pasqualini, Valteau-Couanet, Plantaz, Michon (bib17) 2018; 40
Su, Kishida, Tsubota, Sakamoto, Cao, Kiyonari, Ohira, Kamijo, Narita, Xu (bib40) 2017; 8
Escobar, Mangani, Anderson (bib23) 2020; 5
Simoni, Becht, Fehlings, Loh, Koo, Teng, Yeong, Nahar, Zhang, Kared (bib64) 2018; 557
Cooper, Khakoo, Matthay, Lukens, Seeger, Stram, Gerbing, Nakagawa, Shimada (bib30) 2001; 36
Lundberg, Lee (bib97) 2017
Berridge, Menassa, Moloney, Waters, Welding, Thomsen, Zuberi, Fischer, Aricescu, Pike (bib24) 2018; 91
Pranzatelli, Tate, Travelstead, Barbosa, Bergamini, Civitello, Franz, Greffe, Hanson, Hurwitz (bib51) 2006; 28
Chen, Zhou, Chen, Gu (bib90) 2018; 34
Jones, Michener, Biscotti, Braicu, Sehouli, Ganapathi, Ganapathi (bib29) 2020; 12
Newman, Liu, Green, Gentles, Feng, Xu, Hoang, Diehn, Alizadeh (bib35) 2015; 12
Kazanietz, Durando, Cooke (bib60) 2019; 10
Darnell, Posner (bib8) 2003; 349
Fukushima, Inoue, Takama, Ishii, Okuno, Kobayashi, Yoneda, Nakamura, Kuki, Hara (bib31) 2017; 67
Van de Velde, Allen, Crawford, Wilson, Guy, Russier, Zeitler, Bahrami, Finkelstein, Pelletier (bib20) 2021; 81
Dobin, Davis, Schlesinger, Drenkow, Zaleski, Jha, Batut, Chaisson, Gingeras (bib81) 2013; 29
De Mattos-Arruda, Sammut, Ross, Bashford-Rogers, Greenstein, Markus, Morganella, Teng, Maruvka, Pereira (bib14) 2019; 27
Ruffin, Cillo, Tabib, Liu, Onkar, Kunning, Lampenfeld, Atiya, Abecassis, Kürten (bib57) 2021; 12
Hero, Radojska, Gathof (bib44) 2005
Buchkovich, Brown, Robasky, Chai, Westfall, Vincent, Weimer, Powers (bib42) 2017; 9
Anders, Huber (bib84) 2010; 11
Huynh-Thu, Irrthum, Wehenkel, Geurts (bib87) 2010; 5
Wengner, Höpken, Petrow, Hartmann, Schurigt, Bräuer, Lipp (bib73) 2007; 56
Haas, Dobin, Li, Stransky, Pochet, Regev (bib82) 2019; 20
Bugatti, Manzo, Vitolo, Benaglio, Binda, Scarabelli, Humby, Caporali, Pitzalis, Montecucco (bib71) 2014; 53
Nordlund, Kirkwood, Forget, Milton, Albert, Lerner (bib9) 1983; 9
Shen, Xu, Guan, Zhong, Chen, Zhao, Li, Wang (bib5) 2018; 8
Schneider-Hohendorf, Mohan, Bien, Breuer, Becker, Görlich, Kuhlmann, Widman, Herich, Elpers (bib67) 2016; 7
Gupta, Vander Heiden, Uduman, Gadala-Maria, Yaari, Kleinstein (bib94) 2015; 31
Zekeridou, Lennon (bib12) 2019; 94
Aibar, González-Blas, Moerman, Huynh-Thu, Imrichova, Hulselmans, Rambow, Marine, Geurts, Aerts (bib88) 2017; 14
Molnarfi, Schulze-Topphoff, Weber, Patarroyo, Prod'homme, Varrin-Doyer, Shetty, Linington, Slavin, Hidalgo (bib78) 2013; 210
Gibbs (bib92) 2020; 2001
Bagaeva, Rao, Powers, Segal (bib70) 2006; 176
Godichon-Baggioni, Maugis-Rabusseau, Rau (bib27) 2019; 46
Peres, Gidoni, Polak, Yaari (bib96) 2019; 35
Emerson, DeWitt, Vignali, Gravley, Hu, Osborne, Desmarais, Klinger, Carlson, Hansen (bib49) 2017; 49
Rau, Maugis-Rabusseau (bib26) 2018; 19
Valpione, Mundra, Galvani, Campana, Lorigan, De Rosa, Gupta, Weightman, Mills, Dhomen, Marais (bib62) 2021; 12
Ritchie, Phipson, Wu, Hu, Law, Shi, Smyth (bib83) 2015; 43
Hudlebusch, Skotte, Santoni-Rugiu, Zimling, Lees, Simon, Sauter, Rota, De Ioris, Quarto (bib99) 2011; 71
de Alarcon, Matthay, London, Naranjo, Tenney, Panzer, Hogarty, Park, Maris, Cohn (bib21) 2018; 2
Peng, Xiao, Rong, Ou, Cai, Liu, Li, Zhang, Wu, Lan (bib61) 2021; 119
Kinsbourne (bib15) 1962; 25
Chiou, Tseng, Reuben, Mallajosyula, Molina, Conley, Wilhelmy, McSween, Yang, Nishimiya (bib63) 2021; 54
Jiang, Adler, Macmillan, Mellins (bib79) 2019; 9
Gambini, Conte, Bernini, Angelini, Pession, Paolucci, Donfrancesco, Veneselli, Mazzocco, Tonini (bib32) 2003; 442
McGovern (bib3) 1975; 7
Giles, Kashgarian, Koni, Shlomchik (bib77) 2015; 195
Robins, Campregher, Srivastava, Wacher, Turtle, Kahsai, Riddell, Warren, Carlson (bib46) 2009; 114
Ye, Ma, Madden, Ostell (bib95) 2013; 41
Brady, Liu, Ma, Gout, Hagiwara, Zhou, Wang, Macias, Chen, Easton (bib37) 2020; 11
Valencia-Sanchez, Zekeridou (bib11) 2021; 12
Karlsson, Surh, Sprent, Peterson (bib43) 1991; 351
Smith, Stehlin (bib10) 1965; 18
Pugh, Morozova, Attiyeh, Asgharzadeh, Wei, Auclair, Carter, Cibulskis, Hanna, Kiezun (bib38) 2013; 45
Rudnick, Khakoo, Antunes, Seeger, Brodeur, Shimada, Gerbing, Stram, Matthay (bib19) 2001; 36
Dash, Fiore-Gartland, Hertz, Wang, Sharma, Souquette, Crawford, Clemens, Nguyen, Kedzierska (bib47) 2017; 547
Graus, Delattre, Antoine, Dalmau, Giometto, Grisold, Honnorat, Smitt, Vedeler, Verschuuren (bib6) 2004; 75
Magliozzi, Howell, Vora, Serafini, Nicholas, Puopolo, Reynolds, Aloisi (bib69) 2007; 130
Nelson (bib50) 2010; 185
Moschovakis, Bubke, Friedrichsen, Falk, Feederle, Förster (bib72) 2017; 7
Trüb, Zippelius (bib59) 2021; 12
Cabrita, Lauss, Sanna, Donia, Skaarup Larsen, Mitra, Johansson, Phung, Harbst, Vallon-Christersson (bib54) 2020; 577
Thorsson, Gibbs, Brown, Wolf, Bortone, Ou Yang, Porta-Pardo, Gao, Plaisier, Eddy (bib33) 2018; 48
Al Nimer, Jelcic, Kempf, Pieper, Budka, Sospedra, Martin (bib65) 2018; 5
Swann, Smyth (bib2) 2007; 117
Altman, Baehner (bib18) 1976; 37
Chen, Tan, Kou, Duan, Wang, Meirelles, Clark, Ma'ayan (bib28) 2013; 14
Bernards, Dessain, Weinberg (bib16) 1986; 47
Jones, Tovar, Goehring, Jalali-Yazdi, Okada, Gouaux, Westbrook (bib53) 2019; 11
Chen, Guestrin (bib36) 2016
Dalmau, Armangué, Planagumà, Radosevic, Mannara, Leypoldt, Geis, Lancaster, Titulaer, Rosenfeld, Graus (bib4) 2019; 18
Byrne, Turk (bib7) 2011; 2
Newman (10.1016/j.celrep.2023.112879_bib35) 2015; 12
Trüb (10.1016/j.celrep.2023.112879_bib59) 2021; 12
Ehrlich (10.1016/j.celrep.2023.112879_bib1) 1908
Brady (10.1016/j.celrep.2023.112879_bib37) 2020; 11
Chen (10.1016/j.celrep.2023.112879_bib28) 2013; 14
Darnell (10.1016/j.celrep.2023.112879_bib8) 2003; 349
Giles (10.1016/j.celrep.2023.112879_bib77) 2015; 195
Kulik (10.1016/j.celrep.2023.112879_bib25) 2019; 203
De Grandis (10.1016/j.celrep.2023.112879_bib39) 2009; 40
Jiang (10.1016/j.celrep.2023.112879_bib79) 2019; 9
Huynh-Thu (10.1016/j.celrep.2023.112879_bib87) 2010; 5
Ritchie (10.1016/j.celrep.2023.112879_bib83) 2015; 43
Dash (10.1016/j.celrep.2023.112879_bib47) 2017; 547
Peres (10.1016/j.celrep.2023.112879_bib96) 2019; 35
Chen (10.1016/j.celrep.2023.112879_bib34) 2019; 17
Aibar (10.1016/j.celrep.2023.112879_bib88) 2017; 14
Chen (10.1016/j.celrep.2023.112879_bib36) 2016
Godichon-Baggioni (10.1016/j.celrep.2023.112879_bib27) 2019; 46
Pranzatelli (10.1016/j.celrep.2023.112879_bib51) 2006; 28
Smith (10.1016/j.celrep.2023.112879_bib10) 1965; 18
Fukushima (10.1016/j.celrep.2023.112879_bib31) 2017; 67
Nelson (10.1016/j.celrep.2023.112879_bib50) 2010; 185
Gupta (10.1016/j.celrep.2023.112879_bib94) 2015; 31
Gambini (10.1016/j.celrep.2023.112879_bib32) 2003; 442
Wengner (10.1016/j.celrep.2023.112879_bib73) 2007; 56
Robinson (10.1016/j.celrep.2023.112879_bib85) 2010; 26
Berridge (10.1016/j.celrep.2023.112879_bib24) 2018; 91
Cabrita (10.1016/j.celrep.2023.112879_bib54) 2020; 577
Al Nimer (10.1016/j.celrep.2023.112879_bib65) 2018; 5
Rudnick (10.1016/j.celrep.2023.112879_bib19) 2001; 36
Ruffin (10.1016/j.celrep.2023.112879_bib57) 2021; 12
Molnarfi (10.1016/j.celrep.2023.112879_bib78) 2013; 210
Moschovakis (10.1016/j.celrep.2023.112879_bib72) 2017; 7
Escobar (10.1016/j.celrep.2023.112879_bib23) 2020; 5
Karlsson (10.1016/j.celrep.2023.112879_bib43) 1991; 351
Pipi (10.1016/j.celrep.2023.112879_bib75) 2018; 9
Jones (10.1016/j.celrep.2023.112879_bib68) 2016; 147
Valencia-Sanchez (10.1016/j.celrep.2023.112879_bib11) 2021; 12
Anders (10.1016/j.celrep.2023.112879_bib84) 2010; 11
Jones (10.1016/j.celrep.2023.112879_bib53) 2019; 11
Jones (10.1016/j.celrep.2023.112879_bib29) 2020; 12
Hero (10.1016/j.celrep.2023.112879_bib44) 2005
Thorsson (10.1016/j.celrep.2023.112879_bib33) 2018; 48
Buchkovich (10.1016/j.celrep.2023.112879_bib42) 2017; 9
Hudlebusch (10.1016/j.celrep.2023.112879_bib99) 2011; 71
Gibbs (10.1016/j.celrep.2023.112879_bib92) 2020; 2001
Ye (10.1016/j.celrep.2023.112879_bib95) 2013; 41
Leng (10.1016/j.celrep.2023.112879_bib86) 2013; 29
Shimada (10.1016/j.celrep.2023.112879_bib98) 1999; 86
Shannon (10.1016/j.celrep.2023.112879_bib89) 2003; 13
Rau (10.1016/j.celrep.2023.112879_bib26) 2018; 19
Bugatti (10.1016/j.celrep.2023.112879_bib71) 2014; 53
Carlson (10.1016/j.celrep.2023.112879_bib45) 2013; 4
Sansing (10.1016/j.celrep.2023.112879_bib13) 2007; 3
Helmink (10.1016/j.celrep.2023.112879_bib55) 2020; 577
Pugh (10.1016/j.celrep.2023.112879_bib38) 2013; 45
Van de Velde (10.1016/j.celrep.2023.112879_bib20) 2021; 81
Dendrou (10.1016/j.celrep.2023.112879_bib41) 2018; 18
Chiou (10.1016/j.celrep.2023.112879_bib63) 2021; 54
Hoadley (10.1016/j.celrep.2023.112879_bib93) 2018; 173
Schuierer (10.1016/j.celrep.2023.112879_bib22) 2017; 18
Simoni (10.1016/j.celrep.2023.112879_bib64) 2018; 557
de Alarcon (10.1016/j.celrep.2023.112879_bib21) 2018; 2
Schneider-Hohendorf (10.1016/j.celrep.2023.112879_bib67) 2016; 7
Robins (10.1016/j.celrep.2023.112879_bib46) 2009; 114
Shlomchik (10.1016/j.celrep.2023.112879_bib76) 2012; 247
Shen (10.1016/j.celrep.2023.112879_bib5) 2018; 8
Byrne (10.1016/j.celrep.2023.112879_bib7) 2011; 2
Greiff (10.1016/j.celrep.2023.112879_bib48) 2015; 36
Freed (10.1016/j.celrep.2023.112879_bib91) 2017
Chen (10.1016/j.celrep.2023.112879_bib90) 2018; 34
Swann (10.1016/j.celrep.2023.112879_bib2) 2007; 117
Wilbur (10.1016/j.celrep.2023.112879_bib52) 2019; 66
Haas (10.1016/j.celrep.2023.112879_bib82) 2019; 20
Emerson (10.1016/j.celrep.2023.112879_bib49) 2017; 49
Peng (10.1016/j.celrep.2023.112879_bib61) 2021; 119
Bernards (10.1016/j.celrep.2023.112879_bib16) 1986; 47
Nordlund (10.1016/j.celrep.2023.112879_bib9) 1983; 9
Dandekar (10.1016/j.celrep.2023.112879_bib66) 2016; 7
Pranzatelli (10.1016/j.celrep.2023.112879_bib74) 2012; 243
Cooper (10.1016/j.celrep.2023.112879_bib30) 2001; 36
Su (10.1016/j.celrep.2023.112879_bib40) 2017; 8
Magliozzi (10.1016/j.celrep.2023.112879_bib69) 2007; 130
Lundberg (10.1016/j.celrep.2023.112879_bib97) 2017
Kazanietz (10.1016/j.celrep.2023.112879_bib60) 2019; 10
McGovern (10.1016/j.celrep.2023.112879_bib3) 1975; 7
Altman (10.1016/j.celrep.2023.112879_bib18) 1976; 37
Bagaeva (10.1016/j.celrep.2023.112879_bib70) 2006; 176
Dobin (10.1016/j.celrep.2023.112879_bib81) 2013; 29
Sautès-Fridman (10.1016/j.celrep.2023.112879_bib58) 2019; 19
Zekeridou (10.1016/j.celrep.2023.112879_bib12) 2019; 94
Graus (10.1016/j.celrep.2023.112879_bib6) 2004; 75
Kinsbourne (10.1016/j.celrep.2023.112879_bib15) 1962; 25
Dalmau (10.1016/j.celrep.2023.112879_bib4) 2019; 18
Hero (10.1016/j.celrep.2023.112879_bib17) 2018; 40
Welsh (10.1016/j.celrep.2023.112879_bib80) 2020; 64
De Mattos-Arruda (10.1016/j.celrep.2023.112879_bib14) 2019; 27
Valpione (10.1016/j.celrep.2023.112879_bib62) 2021; 12
Dieu-Nosjean (10.1016/j.celrep.2023.112879_bib56) 2016; 271
References_xml – volume: 247
  start-page: 52
  year: 2012
  end-page: 63
  ident: bib76
  article-title: Germinal center selection and the development of memory B and plasma cells
  publication-title: Immunol. Rev.
– volume: 81
  start-page: 5047
  year: 2021
  end-page: 5059
  ident: bib20
  article-title: Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1-Dependent Myeloid Cells
  publication-title: Cancer Res.
– volume: 7
  start-page: 91
  year: 1975
  end-page: 99
  ident: bib3
  article-title: Spontaneous regression of melanoma
  publication-title: Pathology
– volume: 210
  start-page: 2921
  year: 2013
  end-page: 2937
  ident: bib78
  article-title: MHC class II-dependent B cell APC function is required for induction of CNS autoimmunity independent of myelin-specific antibodies
  publication-title: J. Exp. Med.
– volume: 271
  start-page: 260
  year: 2016
  end-page: 275
  ident: bib56
  article-title: Tertiary lymphoid structures, drivers of the anti-tumor responses in human cancers
  publication-title: Immunol. Rev.
– volume: 36
  start-page: 612
  year: 2001
  end-page: 622
  ident: bib19
  article-title: Opsoclonus-myoclonus-ataxia syndrome in neuroblastoma: clinical outcome and antineuronal antibodies-a report from the Children's Cancer Group Study
  publication-title: Med. Pediatr. Oncol.
– volume: 8
  start-page: 106296
  year: 2017
  end-page: 106310
  ident: bib40
  article-title: Neurocan, an extracellular chondroitin sulfate proteoglycan, stimulates neuroblastoma cells to promote malignant phenotypes
  publication-title: Oncotarget
– volume: 351
  start-page: 485
  year: 1991
  end-page: 488
  ident: bib43
  article-title: A novel class II MHC molecule with unusual tissue distribution
  publication-title: Nature
– volume: 27
  start-page: 2690
  year: 2019
  end-page: 2708.e10
  ident: bib14
  article-title: The Genomic and Immune Landscapes of Lethal Metastatic Breast Cancer
  publication-title: Cell Rep.
– volume: 4
  start-page: 2680
  year: 2013
  ident: bib45
  article-title: Using synthetic templates to design an unbiased multiplex PCR assay
  publication-title: Nat. Commun.
– volume: 18
  start-page: 1399
  year: 1965
  end-page: 1415
  ident: bib10
  article-title: Spontaneous regression of primary malignant melanomas with regional metastases
  publication-title: Cancer
– volume: 20
  start-page: 213
  year: 2019
  ident: bib82
  article-title: Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
  publication-title: Genome Biol.
– volume: 37
  start-page: 846
  year: 1976
  end-page: 852
  ident: bib18
  article-title: Favorable prognosis for survival in children with coincident opso-myoclonus and neuroblastoma
  publication-title: Cancer
– volume: 114
  start-page: 4099
  year: 2009
  end-page: 4107
  ident: bib46
  article-title: Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells
  publication-title: Blood
– volume: 12
  start-page: 642800
  year: 2021
  ident: bib11
  article-title: Paraneoplastic Neurological Syndromes and Beyond Emerging With the Introduction of Immune Checkpoint Inhibitor Cancer Immunotherapy
  publication-title: Front. Neurol.
– volume: 45
  start-page: 279
  year: 2013
  end-page: 284
  ident: bib38
  article-title: The genetic landscape of high-risk neuroblastoma
  publication-title: Nat. Genet.
– volume: 12
  start-page: 3349
  year: 2021
  ident: bib57
  article-title: B cell signatures and tertiary lymphoid structures contribute to outcome in head and neck squamous cell carcinoma
  publication-title: Nat. Commun.
– volume: 94
  start-page: 1865
  year: 2019
  end-page: 1878
  ident: bib12
  article-title: Neurologic Autoimmunity in the Era of Checkpoint Inhibitor Cancer Immunotherapy
  publication-title: Mayo Clin. Proc.
– volume: 26
  start-page: 139
  year: 2010
  end-page: 140
  ident: bib85
  article-title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
  publication-title: Bioinformatics
– volume: 18
  start-page: 325
  year: 2018
  end-page: 339
  ident: bib41
  article-title: HLA variation and disease
  publication-title: Nat. Rev. Immunol.
– volume: 173
  start-page: 291
  year: 2018
  end-page: 304.e6
  ident: bib93
  article-title: Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
  publication-title: Cell
– volume: 176
  start-page: 7676
  year: 2006
  end-page: 7685
  ident: bib70
  article-title: CXC chemokine ligand 13 plays a role in experimental autoimmune encephalomyelitis
  publication-title: J. Immunol.
– year: 2016
  ident: bib36
  article-title: XGBoost: A Scalable Tree Boosting System
  publication-title: arXiv
– volume: 29
  start-page: 1035
  year: 2013
  end-page: 1043
  ident: bib86
  article-title: EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
  publication-title: Bioinformatics
– year: 1908
  ident: bib1
  article-title: Ueber den jetzigen Stand der Karzinomforschung
– volume: 66
  start-page: e27776
  year: 2019
  ident: bib52
  article-title: An upfront immunomodulatory therapy protocol for pediatric opsoclonus-myoclonus syndrome
  publication-title: Pediatr. Blood Cancer
– volume: 31
  start-page: 3356
  year: 2015
  end-page: 3358
  ident: bib94
  article-title: Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
  publication-title: Bioinformatics
– volume: 349
  start-page: 1543
  year: 2003
  end-page: 1554
  ident: bib8
  article-title: Paraneoplastic syndromes involving the nervous system
  publication-title: N. Engl. J. Med.
– volume: 34
  start-page: i884
  year: 2018
  end-page: i890
  ident: bib90
  article-title: fastp: an ultra-fast all-in-one FASTQ preprocessor
  publication-title: Bioinformatics
– volume: 9
  start-page: 689
  year: 1983
  end-page: 696
  ident: bib9
  article-title: Vitiligo in patients with metastatic melanoma: a good prognostic sign
  publication-title: J. Am. Acad. Dermatol.
– volume: 18
  start-page: 1045
  year: 2019
  end-page: 1057
  ident: bib4
  article-title: An update on anti-NMDA receptor encephalitis for neurologists and psychiatrists: mechanisms and models
  publication-title: Lancet Neurol.
– volume: 12
  start-page: 4098
  year: 2021
  ident: bib62
  article-title: The T cell receptor repertoire of tumor infiltrating T cells is predictive and prognostic for cancer survival
  publication-title: Nat. Commun.
– volume: 3
  start-page: 291
  year: 2007
  end-page: 296
  ident: bib13
  article-title: A patient with encephalitis associated with NMDA receptor antibodies
  publication-title: Nat. Clin. Pract. Neurol.
– volume: 19
  start-page: 425
  year: 2018
  end-page: 436
  ident: bib26
  article-title: Transformation and model choice for RNA-seq co-expression analysis
  publication-title: Briefings Bioinf.
– volume: 13
  start-page: 2498
  year: 2003
  end-page: 2504
  ident: bib89
  article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res.
– volume: 49
  start-page: 659
  year: 2017
  end-page: 665
  ident: bib49
  article-title: Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
  publication-title: Nat. Genet.
– volume: 71
  start-page: 4226
  year: 2011
  end-page: 4235
  ident: bib99
  article-title: MMSET is highly expressed and associated with aggressiveness in neuroblastoma
  publication-title: Cancer Res.
– volume: 577
  start-page: 561
  year: 2020
  end-page: 565
  ident: bib54
  article-title: Tertiary lymphoid structures improve immunotherapy and survival in melanoma
  publication-title: Nature
– volume: 117
  start-page: 1137
  year: 2007
  end-page: 1146
  ident: bib2
  article-title: Immune surveillance of tumors
  publication-title: J. Clin. Invest.
– volume: 203
  start-page: 3136
  year: 2019
  end-page: 3147
  ident: bib25
  article-title: Targeting the Immune Complex-Bound Complement C3d Ligand as a Novel Therapy for Lupus
  publication-title: J. Immunol.
– volume: 577
  start-page: 549
  year: 2020
  end-page: 555
  ident: bib55
  article-title: B cells and tertiary lymphoid structures promote immunotherapy response
  publication-title: Nature
– volume: 147
  start-page: 141
  year: 2016
  end-page: 151
  ident: bib68
  article-title: Ectopic lymphoid follicles: inducible centres for generating antigen-specific immune responses within tissues
  publication-title: Immunology
– volume: 28
  start-page: 585
  year: 2006
  end-page: 593
  ident: bib51
  article-title: Rituximab (anti-CD20) adjunctive therapy for opsoclonus-myoclonus syndrome
  publication-title: J. Pediatr. Hematol. Oncol.
– volume: 36
  start-page: 623
  year: 2001
  end-page: 629
  ident: bib30
  article-title: Opsoclonus-myoclonus-ataxia syndrome in neuroblastoma: histopathologic features-a report from the Children's Cancer Group
  publication-title: Med. Pediatr. Oncol.
– volume: 19
  start-page: 307
  year: 2019
  end-page: 325
  ident: bib58
  article-title: Tertiary lymphoid structures in the era of cancer immunotherapy
  publication-title: Nat. Rev. Cancer
– volume: 11
  start-page: 5183
  year: 2020
  ident: bib37
  article-title: Pan-neuroblastoma analysis reveals age- and signature-associated driver alterations
  publication-title: Nat. Commun.
– volume: 25
  start-page: 271
  year: 1962
  end-page: 276
  ident: bib15
  article-title: Myoclonic encephalopathy of infants
  publication-title: J. Neurol. Neurosurg. Psychiatry
– volume: 29
  start-page: 15
  year: 2013
  end-page: 21
  ident: bib81
  article-title: STAR: ultrafast universal RNA-seq aligner
  publication-title: Bioinformatics
– volume: 9
  start-page: 13877
  year: 2019
  ident: bib79
  article-title: Synergy between B cell receptor/antigen uptake and MHCII peptide editing relies on HLA-DO tuning
  publication-title: Sci. Rep.
– volume: 5
  start-page: eabb9726
  year: 2020
  ident: bib23
  article-title: T cell factor 1: A master regulator of the T cell response in disease
  publication-title: Sci. Immunol.
– volume: 86
  start-page: 364
  year: 1999
  end-page: 372
  ident: bib98
  article-title: The International Neuroblastoma Pathology Classification (the Shimada system)
  publication-title: Cancer
– volume: 40
  start-page: 93
  year: 2018
  end-page: 98
  ident: bib17
  article-title: Genomic Profiles of Neuroblastoma Associated With Opsoclonus Myoclonus Syndrome
  publication-title: J. Pediatr. Hematol. Oncol.
– volume: 442
  start-page: 555
  year: 2003
  end-page: 562
  ident: bib32
  article-title: Neuroblastic tumors associated with opsoclonus-myoclonus syndrome: histological, immunohistochemical and molecular features of 15 Italian cases
  publication-title: Virchows Arch.
– volume: 43
  start-page: e47
  year: 2015
  ident: bib83
  article-title: limma powers differential expression analyses for RNA-sequencing and microarray studies
  publication-title: Nucleic Acids Res.
– volume: 54
  start-page: 586
  year: 2021
  end-page: 602.e8
  ident: bib63
  article-title: Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
  publication-title: Immunity
– volume: 41
  start-page: W34
  year: 2013
  end-page: W40
  ident: bib95
  article-title: IgBLAST: an immunoglobulin variable domain sequence analysis tool
  publication-title: Nucleic Acids Res.
– volume: 185
  start-page: 4977
  year: 2010
  end-page: 4982
  ident: bib50
  article-title: CD20+ B cells: the other tumor-infiltrating lymphocytes
  publication-title: J. Immunol.
– year: 2017
  ident: bib97
  article-title: A Unified Approach to Interpreting Model Predictions
  publication-title: arXiv
– volume: 8
  start-page: 6792
  year: 2018
  ident: bib5
  article-title: Paraneoplastic limbic encephalitis associated with lung cancer
  publication-title: Sci. Rep.
– volume: 36
  start-page: 738
  year: 2015
  end-page: 749
  ident: bib48
  article-title: Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires
  publication-title: Trends Immunol.
– volume: 46
  start-page: 47
  year: 2019
  end-page: 65
  ident: bib27
  article-title: Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data
  publication-title: J. Appl. Stat.
– volume: 48
  start-page: 812
  year: 2018
  end-page: 830.e14
  ident: bib33
  article-title: The Immune Landscape of Cancer
  publication-title: Immunity
– volume: 547
  start-page: 89
  year: 2017
  end-page: 93
  ident: bib47
  article-title: Quantifiable predictive features define epitope-specific T cell receptor repertoires
  publication-title: Nature
– volume: 7
  start-page: 8933
  year: 2017
  ident: bib72
  article-title: T cell specific Cxcr5 deficiency prevents rheumatoid arthritis
  publication-title: Sci. Rep.
– volume: 12
  start-page: 620
  year: 2020
  ident: bib29
  article-title: RNA Immune Signatures from Pan-Cancer Analysis Are Prognostic for High-Grade Serous Ovarian Cancer and Other Female Cancers
  publication-title: Cancers
– volume: 7
  start-page: 11153
  year: 2016
  ident: bib67
  article-title: CD8(+) T-cell pathogenicity in Rasmussen encephalitis elucidated by large-scale T-cell receptor sequencing
  publication-title: Nat. Commun.
– volume: 14
  start-page: 1083
  year: 2017
  end-page: 1086
  ident: bib88
  article-title: SCENIC: single-cell regulatory network inference and clustering
  publication-title: Nat. Methods
– volume: 2
  start-page: 25
  year: 2018
  end-page: 34
  ident: bib21
  article-title: Intravenous immunoglobulin with prednisone and risk-adapted chemotherapy for children with opsoclonus myoclonus ataxia syndrome associated with neuroblastoma (ANBL00P3): a randomised, open-label, phase 3 trial
  publication-title: Lancet. Child Adolesc. Health
– volume: 119
  start-page: 105348
  year: 2021
  ident: bib61
  article-title: Single-cell profiling of tumor-infiltrating TCF1/TCF7(+) T cells reveals a T lymphocyte subset associated with tertiary lymphoid structures/organs and a superior prognosis in oral cancer
  publication-title: Oral Oncol.
– volume: 130
  start-page: 1089
  year: 2007
  end-page: 1104
  ident: bib69
  article-title: Meningeal B-cell follicles in secondary progressive multiple sclerosis associate with early onset of disease and severe cortical pathology
  publication-title: Brain
– volume: 12
  start-page: 453
  year: 2015
  end-page: 457
  ident: bib35
  article-title: Robust enumeration of cell subsets from tissue expression profiles
  publication-title: Nat. Methods
– volume: 557
  start-page: 575
  year: 2018
  end-page: 579
  ident: bib64
  article-title: Bystander CD8(+) T cells are abundant and phenotypically distinct in human tumour infiltrates
  publication-title: Nature
– volume: 10
  start-page: 471
  year: 2019
  ident: bib60
  article-title: CXCL13 and Its Receptor CXCR5 in Cancer: Inflammation, Immune Response, and Beyond
  publication-title: Front. Endocrinol.
– volume: 35
  start-page: 4840
  year: 2019
  end-page: 4842
  ident: bib96
  article-title: RAbHIT: R Antibody Haplotype Inference Tool
  publication-title: Bioinformatics
– volume: 18
  start-page: 442
  year: 2017
  ident: bib22
  article-title: A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples
  publication-title: BMC Genom.
– volume: 40
  start-page: 103
  year: 2009
  end-page: 111
  ident: bib39
  article-title: Long-term follow-up of neuroblastoma-associated opsoclonus-myoclonus-ataxia syndrome
  publication-title: Neuropediatrics
– volume: 5
  start-page: e419
  year: 2018
  ident: bib65
  article-title: Phenotypic and functional complexity of brain-infiltrating T cells in Rasmussen encephalitis
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
– volume: 243
  start-page: 81
  year: 2012
  end-page: 88
  ident: bib74
  article-title: Key role of CXCL13/CXCR5 axis for cerebrospinal fluid B cell recruitment in pediatric OMS
  publication-title: J. Neuroimmunol.
– start-page: 115717
  year: 2017
  ident: bib91
  article-title: The Sentieon Genomics Tools - A Fast and Accurate Solution to Variant Calling from Next-Generation Sequence Data
  publication-title: bioRxiv
– volume: 17
  start-page: 476
  year: 2019
  end-page: 487
  ident: bib34
  article-title: Molecular Correlates of Metastasis by Systematic Pan-Cancer Analysis Across The Cancer Genome Atlas
  publication-title: Mol. Cancer Res.
– volume: 75
  start-page: 1135
  year: 2004
  end-page: 1140
  ident: bib6
  article-title: Recommended diagnostic criteria for paraneoplastic neurological syndromes
  publication-title: J. Neurol. Neurosurg. Psychiatry
– volume: 67
  start-page: 503
  year: 2017
  end-page: 509
  ident: bib31
  article-title: Clinicopathological features of neuroblastic tumors with opsoclonus-myoclonus-ataxia syndrome: Follicular structure predicts a better neurological outcome
  publication-title: Pathol. Int.
– volume: 9
  start-page: 86
  year: 2017
  ident: bib42
  article-title: HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data
  publication-title: Genome Med.
– volume: 7
  start-page: 608
  year: 2016
  ident: bib66
  article-title: Shared HLA Class I and II Alleles and Clonally Restricted Public and Private Brain-Infiltrating alphabeta T Cells in a Cohort of Rasmussen Encephalitis Surgery Patients
  publication-title: Front. Immunol.
– start-page: 365
  year: 2005
  end-page: 608
  ident: bib44
  article-title: Opsomyoclonus Syndrome in infancy with or without neuroblastoma is associated with HLA-DRB1
  publication-title: Pediatric Blood & Cancer 45
– volume: 195
  start-page: 2571
  year: 2015
  end-page: 2579
  ident: bib77
  article-title: B Cell-Specific MHC Class II Deletion Reveals Multiple Nonredundant Roles for B Cell Antigen Presentation in Murine Lupus
  publication-title: J. Immunol.
– volume: 53
  start-page: 1886
  year: 2014
  end-page: 1895
  ident: bib71
  article-title: High expression levels of the B cell chemoattractant CXCL13 in rheumatoid synovium are a marker of severe disease
  publication-title: Rheumatology
– volume: 64
  start-page: 117
  year: 2020
  end-page: 123
  ident: bib80
  article-title: The love and hate relationship of HLA-DM/DO in the selection of immunodominant epitopes
  publication-title: Curr. Opin. Immunol.
– volume: 5
  start-page: e12776
  year: 2010
  ident: bib87
  article-title: Inferring regulatory networks from expression data using tree-based methods
  publication-title: PLoS One
– volume: 11
  start-page: eaaw0044
  year: 2019
  ident: bib53
  article-title: Autoimmune receptor encephalitis in mice induced by active immunization with conformationally stabilized holoreceptors
  publication-title: Sci. Transl. Med.
– volume: 12
  start-page: 674565
  year: 2021
  ident: bib59
  article-title: Tertiary Lymphoid Structures as a Predictive Biomarker of Response to Cancer Immunotherapies
  publication-title: Front. Immunol.
– volume: 56
  start-page: 3271
  year: 2007
  end-page: 3283
  ident: bib73
  article-title: CXCR5- and CCR7-dependent lymphoid neogenesis in a murine model of chronic antigen-induced arthritis
  publication-title: Arthritis Rheum.
– volume: 91
  start-page: e714
  year: 2018
  end-page: e723
  ident: bib24
  article-title: Glutamate receptor delta2 serum antibodies in pediatric opsoclonus myoclonus ataxia syndrome
  publication-title: Neurology
– volume: 2
  start-page: 684
  year: 2011
  end-page: 694
  ident: bib7
  article-title: New perspectives on the role of vitiligo in immune responses to melanoma
  publication-title: Oncotarget
– volume: 9
  start-page: 1952
  year: 2018
  ident: bib75
  article-title: Tertiary Lymphoid Structures: Autoimmunity Goes Local
  publication-title: Front. Immunol.
– volume: 47
  start-page: 667
  year: 1986
  end-page: 674
  ident: bib16
  article-title: N-myc amplification causes down-modulation of MHC class I antigen expression in neuroblastoma
  publication-title: Cell
– volume: 2001
  year: 2020
  ident: bib92
  article-title: Robust Classification of Immune Subtypes in Cancer
  publication-title: bioRxiv
– volume: 11
  start-page: R106
  year: 2010
  ident: bib84
  article-title: Differential expression analysis for sequence count data
  publication-title: Genome Biol.
– volume: 14
  start-page: 128
  year: 2013
  ident: bib28
  article-title: Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
  publication-title: BMC Bioinf.
– start-page: 365
  year: 2005
  ident: 10.1016/j.celrep.2023.112879_bib44
  article-title: Opsomyoclonus Syndrome in infancy with or without neuroblastoma is associated with HLA-DRB1∗01
– volume: 13
  start-page: 2498
  year: 2003
  ident: 10.1016/j.celrep.2023.112879_bib89
  article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res.
  doi: 10.1101/gr.1239303
– volume: 130
  start-page: 1089
  year: 2007
  ident: 10.1016/j.celrep.2023.112879_bib69
  article-title: Meningeal B-cell follicles in secondary progressive multiple sclerosis associate with early onset of disease and severe cortical pathology
  publication-title: Brain
  doi: 10.1093/brain/awm038
– volume: 7
  start-page: 11153
  year: 2016
  ident: 10.1016/j.celrep.2023.112879_bib67
  article-title: CD8(+) T-cell pathogenicity in Rasmussen encephalitis elucidated by large-scale T-cell receptor sequencing
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms11153
– volume: 19
  start-page: 425
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib26
  article-title: Transformation and model choice for RNA-seq co-expression analysis
  publication-title: Briefings Bioinf.
– volume: 36
  start-page: 612
  year: 2001
  ident: 10.1016/j.celrep.2023.112879_bib19
  article-title: Opsoclonus-myoclonus-ataxia syndrome in neuroblastoma: clinical outcome and antineuronal antibodies-a report from the Children's Cancer Group Study
  publication-title: Med. Pediatr. Oncol.
  doi: 10.1002/mpo.1138
– volume: 36
  start-page: 623
  year: 2001
  ident: 10.1016/j.celrep.2023.112879_bib30
  article-title: Opsoclonus-myoclonus-ataxia syndrome in neuroblastoma: histopathologic features-a report from the Children's Cancer Group
  publication-title: Med. Pediatr. Oncol.
  doi: 10.1002/mpo.1139
– volume: 349
  start-page: 1543
  year: 2003
  ident: 10.1016/j.celrep.2023.112879_bib8
  article-title: Paraneoplastic syndromes involving the nervous system
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMra023009
– volume: 18
  start-page: 325
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib41
  article-title: HLA variation and disease
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri.2017.143
– start-page: 115717
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib91
  article-title: The Sentieon Genomics Tools - A Fast and Accurate Solution to Variant Calling from Next-Generation Sequence Data
  publication-title: bioRxiv
– year: 2016
  ident: 10.1016/j.celrep.2023.112879_bib36
  article-title: XGBoost: A Scalable Tree Boosting System
  publication-title: arXiv
– volume: 36
  start-page: 738
  year: 2015
  ident: 10.1016/j.celrep.2023.112879_bib48
  article-title: Bioinformatic and Statistical Analysis of Adaptive Immune Repertoires
  publication-title: Trends Immunol.
  doi: 10.1016/j.it.2015.09.006
– volume: 547
  start-page: 89
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib47
  article-title: Quantifiable predictive features define epitope-specific T cell receptor repertoires
  publication-title: Nature
  doi: 10.1038/nature22383
– volume: 28
  start-page: 585
  year: 2006
  ident: 10.1016/j.celrep.2023.112879_bib51
  article-title: Rituximab (anti-CD20) adjunctive therapy for opsoclonus-myoclonus syndrome
  publication-title: J. Pediatr. Hematol. Oncol.
  doi: 10.1097/01.mph.0000212991.64435.f0
– year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib97
  article-title: A Unified Approach to Interpreting Model Predictions
  publication-title: arXiv
– volume: 64
  start-page: 117
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib80
  article-title: The love and hate relationship of HLA-DM/DO in the selection of immunodominant epitopes
  publication-title: Curr. Opin. Immunol.
  doi: 10.1016/j.coi.2020.05.007
– volume: 5
  start-page: e419
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib65
  article-title: Phenotypic and functional complexity of brain-infiltrating T cells in Rasmussen encephalitis
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  doi: 10.1212/NXI.0000000000000419
– volume: 29
  start-page: 15
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib81
  article-title: STAR: ultrafast universal RNA-seq aligner
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts635
– volume: 18
  start-page: 1399
  year: 1965
  ident: 10.1016/j.celrep.2023.112879_bib10
  article-title: Spontaneous regression of primary malignant melanomas with regional metastases
  publication-title: Cancer
  doi: 10.1002/1097-0142(196511)18:11<1399::AID-CNCR2820181104>3.0.CO;2-R
– volume: 53
  start-page: 1886
  year: 2014
  ident: 10.1016/j.celrep.2023.112879_bib71
  article-title: High expression levels of the B cell chemoattractant CXCL13 in rheumatoid synovium are a marker of severe disease
  publication-title: Rheumatology
  doi: 10.1093/rheumatology/keu163
– volume: 14
  start-page: 128
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib28
  article-title: Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
  publication-title: BMC Bioinf.
  doi: 10.1186/1471-2105-14-128
– volume: 247
  start-page: 52
  year: 2012
  ident: 10.1016/j.celrep.2023.112879_bib76
  article-title: Germinal center selection and the development of memory B and plasma cells
  publication-title: Immunol. Rev.
  doi: 10.1111/j.1600-065X.2012.01124.x
– volume: 10
  start-page: 471
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib60
  article-title: CXCL13 and Its Receptor CXCR5 in Cancer: Inflammation, Immune Response, and Beyond
  publication-title: Front. Endocrinol.
  doi: 10.3389/fendo.2019.00471
– volume: 12
  start-page: 453
  year: 2015
  ident: 10.1016/j.celrep.2023.112879_bib35
  article-title: Robust enumeration of cell subsets from tissue expression profiles
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3337
– volume: 2
  start-page: 25
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib21
  article-title: Intravenous immunoglobulin with prednisone and risk-adapted chemotherapy for children with opsoclonus myoclonus ataxia syndrome associated with neuroblastoma (ANBL00P3): a randomised, open-label, phase 3 trial
  publication-title: Lancet. Child Adolesc. Health
  doi: 10.1016/S2352-4642(17)30130-X
– volume: 9
  start-page: 13877
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib79
  article-title: Synergy between B cell receptor/antigen uptake and MHCII peptide editing relies on HLA-DO tuning
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-50455-y
– volume: 29
  start-page: 1035
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib86
  article-title: EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btt087
– volume: 176
  start-page: 7676
  year: 2006
  ident: 10.1016/j.celrep.2023.112879_bib70
  article-title: CXC chemokine ligand 13 plays a role in experimental autoimmune encephalomyelitis
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.176.12.7676
– volume: 47
  start-page: 667
  year: 1986
  ident: 10.1016/j.celrep.2023.112879_bib16
  article-title: N-myc amplification causes down-modulation of MHC class I antigen expression in neuroblastoma
  publication-title: Cell
  doi: 10.1016/0092-8674(86)90509-X
– volume: 17
  start-page: 476
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib34
  article-title: Molecular Correlates of Metastasis by Systematic Pan-Cancer Analysis Across The Cancer Genome Atlas
  publication-title: Mol. Cancer Res.
  doi: 10.1158/1541-7786.MCR-18-0601
– volume: 117
  start-page: 1137
  year: 2007
  ident: 10.1016/j.celrep.2023.112879_bib2
  article-title: Immune surveillance of tumors
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI31405
– volume: 75
  start-page: 1135
  year: 2004
  ident: 10.1016/j.celrep.2023.112879_bib6
  article-title: Recommended diagnostic criteria for paraneoplastic neurological syndromes
  publication-title: J. Neurol. Neurosurg. Psychiatry
  doi: 10.1136/jnnp.2003.034447
– volume: 18
  start-page: 442
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib22
  article-title: A comprehensive assessment of RNA-seq protocols for degraded and low-quantity samples
  publication-title: BMC Genom.
  doi: 10.1186/s12864-017-3827-y
– volume: 18
  start-page: 1045
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib4
  article-title: An update on anti-NMDA receptor encephalitis for neurologists and psychiatrists: mechanisms and models
  publication-title: Lancet Neurol.
  doi: 10.1016/S1474-4422(19)30244-3
– volume: 351
  start-page: 485
  year: 1991
  ident: 10.1016/j.celrep.2023.112879_bib43
  article-title: A novel class II MHC molecule with unusual tissue distribution
  publication-title: Nature
  doi: 10.1038/351485a0
– volume: 67
  start-page: 503
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib31
  article-title: Clinicopathological features of neuroblastic tumors with opsoclonus-myoclonus-ataxia syndrome: Follicular structure predicts a better neurological outcome
  publication-title: Pathol. Int.
  doi: 10.1111/pin.12591
– volume: 86
  start-page: 364
  year: 1999
  ident: 10.1016/j.celrep.2023.112879_bib98
  article-title: The International Neuroblastoma Pathology Classification (the Shimada system)
  publication-title: Cancer
  doi: 10.1002/(SICI)1097-0142(19990715)86:2<364::AID-CNCR21>3.0.CO;2-7
– volume: 43
  start-page: e47
  year: 2015
  ident: 10.1016/j.celrep.2023.112879_bib83
  article-title: limma powers differential expression analyses for RNA-sequencing and microarray studies
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkv007
– volume: 5
  start-page: eabb9726
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib23
  article-title: T cell factor 1: A master regulator of the T cell response in disease
  publication-title: Sci. Immunol.
  doi: 10.1126/sciimmunol.abb9726
– volume: 114
  start-page: 4099
  year: 2009
  ident: 10.1016/j.celrep.2023.112879_bib46
  article-title: Comprehensive assessment of T-cell receptor beta-chain diversity in alphabeta T cells
  publication-title: Blood
  doi: 10.1182/blood-2009-04-217604
– volume: 8
  start-page: 6792
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib5
  article-title: Paraneoplastic limbic encephalitis associated with lung cancer
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-018-25294-y
– volume: 40
  start-page: 93
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib17
  article-title: Genomic Profiles of Neuroblastoma Associated With Opsoclonus Myoclonus Syndrome
  publication-title: J. Pediatr. Hematol. Oncol.
  doi: 10.1097/MPH.0000000000000976
– volume: 12
  start-page: 620
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib29
  article-title: RNA Immune Signatures from Pan-Cancer Analysis Are Prognostic for High-Grade Serous Ovarian Cancer and Other Female Cancers
  publication-title: Cancers
  doi: 10.3390/cancers12030620
– volume: 11
  start-page: eaaw0044
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib53
  article-title: Autoimmune receptor encephalitis in mice induced by active immunization with conformationally stabilized holoreceptors
  publication-title: Sci. Transl. Med.
  doi: 10.1126/scitranslmed.aaw0044
– volume: 3
  start-page: 291
  year: 2007
  ident: 10.1016/j.celrep.2023.112879_bib13
  article-title: A patient with encephalitis associated with NMDA receptor antibodies
  publication-title: Nat. Clin. Pract. Neurol.
  doi: 10.1038/ncpneuro0493
– volume: 11
  start-page: 5183
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib37
  article-title: Pan-neuroblastoma analysis reveals age- and signature-associated driver alterations
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-18987-4
– volume: 31
  start-page: 3356
  year: 2015
  ident: 10.1016/j.celrep.2023.112879_bib94
  article-title: Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv359
– volume: 185
  start-page: 4977
  year: 2010
  ident: 10.1016/j.celrep.2023.112879_bib50
  article-title: CD20+ B cells: the other tumor-infiltrating lymphocytes
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1001323
– volume: 20
  start-page: 213
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib82
  article-title: Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
  publication-title: Genome Biol.
  doi: 10.1186/s13059-019-1842-9
– volume: 19
  start-page: 307
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib58
  article-title: Tertiary lymphoid structures in the era of cancer immunotherapy
  publication-title: Nat. Rev. Cancer
  doi: 10.1038/s41568-019-0144-6
– volume: 2
  start-page: 684
  year: 2011
  ident: 10.1016/j.celrep.2023.112879_bib7
  article-title: New perspectives on the role of vitiligo in immune responses to melanoma
  publication-title: Oncotarget
  doi: 10.18632/oncotarget.323
– volume: 34
  start-page: i884
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib90
  article-title: fastp: an ultra-fast all-in-one FASTQ preprocessor
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bty560
– volume: 147
  start-page: 141
  year: 2016
  ident: 10.1016/j.celrep.2023.112879_bib68
  article-title: Ectopic lymphoid follicles: inducible centres for generating antigen-specific immune responses within tissues
  publication-title: Immunology
  doi: 10.1111/imm.12554
– volume: 4
  start-page: 2680
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib45
  article-title: Using synthetic templates to design an unbiased multiplex PCR assay
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms3680
– volume: 119
  start-page: 105348
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib61
  article-title: Single-cell profiling of tumor-infiltrating TCF1/TCF7(+) T cells reveals a T lymphocyte subset associated with tertiary lymphoid structures/organs and a superior prognosis in oral cancer
  publication-title: Oral Oncol.
  doi: 10.1016/j.oraloncology.2021.105348
– volume: 37
  start-page: 846
  year: 1976
  ident: 10.1016/j.celrep.2023.112879_bib18
  article-title: Favorable prognosis for survival in children with coincident opso-myoclonus and neuroblastoma
  publication-title: Cancer
  doi: 10.1002/1097-0142(197602)37:2<846::AID-CNCR2820370233>3.0.CO;2-L
– volume: 11
  start-page: R106
  year: 2010
  ident: 10.1016/j.celrep.2023.112879_bib84
  article-title: Differential expression analysis for sequence count data
  publication-title: Genome Biol.
  doi: 10.1186/gb-2010-11-10-r106
– volume: 46
  start-page: 47
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib27
  article-title: Clustering transformed compositional data using K-means, with applications in gene expression and bicycle sharing system data
  publication-title: J. Appl. Stat.
  doi: 10.1080/02664763.2018.1454894
– volume: 7
  start-page: 91
  year: 1975
  ident: 10.1016/j.celrep.2023.112879_bib3
  article-title: Spontaneous regression of melanoma
  publication-title: Pathology
  doi: 10.3109/00313027509092702
– volume: 91
  start-page: e714
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib24
  article-title: Glutamate receptor delta2 serum antibodies in pediatric opsoclonus myoclonus ataxia syndrome
  publication-title: Neurology
  doi: 10.1212/WNL.0000000000006035
– volume: 94
  start-page: 1865
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib12
  article-title: Neurologic Autoimmunity in the Era of Checkpoint Inhibitor Cancer Immunotherapy
  publication-title: Mayo Clin. Proc.
  doi: 10.1016/j.mayocp.2019.02.003
– volume: 7
  start-page: 608
  year: 2016
  ident: 10.1016/j.celrep.2023.112879_bib66
  article-title: Shared HLA Class I and II Alleles and Clonally Restricted Public and Private Brain-Infiltrating alphabeta T Cells in a Cohort of Rasmussen Encephalitis Surgery Patients
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2016.00608
– volume: 81
  start-page: 5047
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib20
  article-title: Neuroblastoma Formation Requires Unconventional CD4 T Cells and Arginase-1-Dependent Myeloid Cells
  publication-title: Cancer Res.
  doi: 10.1158/0008-5472.CAN-21-0691
– volume: 8
  start-page: 106296
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib40
  article-title: Neurocan, an extracellular chondroitin sulfate proteoglycan, stimulates neuroblastoma cells to promote malignant phenotypes
  publication-title: Oncotarget
  doi: 10.18632/oncotarget.22435
– volume: 9
  start-page: 86
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib42
  article-title: HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data
  publication-title: Genome Med.
  doi: 10.1186/s13073-017-0473-6
– year: 1908
  ident: 10.1016/j.celrep.2023.112879_bib1
– volume: 9
  start-page: 689
  year: 1983
  ident: 10.1016/j.celrep.2023.112879_bib9
  article-title: Vitiligo in patients with metastatic melanoma: a good prognostic sign
  publication-title: J. Am. Acad. Dermatol.
  doi: 10.1016/S0190-9622(83)70182-9
– volume: 66
  start-page: e27776
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib52
  article-title: An upfront immunomodulatory therapy protocol for pediatric opsoclonus-myoclonus syndrome
  publication-title: Pediatr. Blood Cancer
  doi: 10.1002/pbc.27776
– volume: 442
  start-page: 555
  year: 2003
  ident: 10.1016/j.celrep.2023.112879_bib32
  article-title: Neuroblastic tumors associated with opsoclonus-myoclonus syndrome: histological, immunohistochemical and molecular features of 15 Italian cases
  publication-title: Virchows Arch.
  doi: 10.1007/s00428-002-0747-1
– volume: 26
  start-page: 139
  year: 2010
  ident: 10.1016/j.celrep.2023.112879_bib85
  article-title: edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp616
– volume: 25
  start-page: 271
  year: 1962
  ident: 10.1016/j.celrep.2023.112879_bib15
  article-title: Myoclonic encephalopathy of infants
  publication-title: J. Neurol. Neurosurg. Psychiatry
  doi: 10.1136/jnnp.25.3.271
– volume: 7
  start-page: 8933
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib72
  article-title: T cell specific Cxcr5 deficiency prevents rheumatoid arthritis
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-017-08935-6
– volume: 577
  start-page: 549
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib55
  article-title: B cells and tertiary lymphoid structures promote immunotherapy response
  publication-title: Nature
  doi: 10.1038/s41586-019-1922-8
– volume: 41
  start-page: W34
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib95
  article-title: IgBLAST: an immunoglobulin variable domain sequence analysis tool
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkt382
– volume: 2001
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib92
  article-title: Robust Classification of Immune Subtypes in Cancer
  publication-title: bioRxiv
– volume: 40
  start-page: 103
  year: 2009
  ident: 10.1016/j.celrep.2023.112879_bib39
  article-title: Long-term follow-up of neuroblastoma-associated opsoclonus-myoclonus-ataxia syndrome
  publication-title: Neuropediatrics
  doi: 10.1055/s-0029-1237723
– volume: 71
  start-page: 4226
  year: 2011
  ident: 10.1016/j.celrep.2023.112879_bib99
  article-title: MMSET is highly expressed and associated with aggressiveness in neuroblastoma
  publication-title: Cancer Res.
  doi: 10.1158/0008-5472.CAN-10-3810
– volume: 14
  start-page: 1083
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib88
  article-title: SCENIC: single-cell regulatory network inference and clustering
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.4463
– volume: 49
  start-page: 659
  year: 2017
  ident: 10.1016/j.celrep.2023.112879_bib49
  article-title: Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3822
– volume: 56
  start-page: 3271
  year: 2007
  ident: 10.1016/j.celrep.2023.112879_bib73
  article-title: CXCR5- and CCR7-dependent lymphoid neogenesis in a murine model of chronic antigen-induced arthritis
  publication-title: Arthritis Rheum.
  doi: 10.1002/art.22939
– volume: 203
  start-page: 3136
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib25
  article-title: Targeting the Immune Complex-Bound Complement C3d Ligand as a Novel Therapy for Lupus
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1900620
– volume: 271
  start-page: 260
  year: 2016
  ident: 10.1016/j.celrep.2023.112879_bib56
  article-title: Tertiary lymphoid structures, drivers of the anti-tumor responses in human cancers
  publication-title: Immunol. Rev.
  doi: 10.1111/imr.12405
– volume: 12
  start-page: 674565
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib59
  article-title: Tertiary Lymphoid Structures as a Predictive Biomarker of Response to Cancer Immunotherapies
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2021.674565
– volume: 5
  start-page: e12776
  year: 2010
  ident: 10.1016/j.celrep.2023.112879_bib87
  article-title: Inferring regulatory networks from expression data using tree-based methods
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0012776
– volume: 557
  start-page: 575
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib64
  article-title: Bystander CD8(+) T cells are abundant and phenotypically distinct in human tumour infiltrates
  publication-title: Nature
  doi: 10.1038/s41586-018-0130-2
– volume: 12
  start-page: 3349
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib57
  article-title: B cell signatures and tertiary lymphoid structures contribute to outcome in head and neck squamous cell carcinoma
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-23355-x
– volume: 195
  start-page: 2571
  year: 2015
  ident: 10.1016/j.celrep.2023.112879_bib77
  article-title: B Cell-Specific MHC Class II Deletion Reveals Multiple Nonredundant Roles for B Cell Antigen Presentation in Murine Lupus
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1500792
– volume: 48
  start-page: 812
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib33
  article-title: The Immune Landscape of Cancer
  publication-title: Immunity
  doi: 10.1016/j.immuni.2018.03.023
– volume: 35
  start-page: 4840
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib96
  article-title: RAbHIT: R Antibody Haplotype Inference Tool
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btz481
– volume: 27
  start-page: 2690
  year: 2019
  ident: 10.1016/j.celrep.2023.112879_bib14
  article-title: The Genomic and Immune Landscapes of Lethal Metastatic Breast Cancer
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2019.04.098
– volume: 210
  start-page: 2921
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib78
  article-title: MHC class II-dependent B cell APC function is required for induction of CNS autoimmunity independent of myelin-specific antibodies
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20130699
– volume: 45
  start-page: 279
  year: 2013
  ident: 10.1016/j.celrep.2023.112879_bib38
  article-title: The genetic landscape of high-risk neuroblastoma
  publication-title: Nat. Genet.
  doi: 10.1038/ng.2529
– volume: 9
  start-page: 1952
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib75
  article-title: Tertiary Lymphoid Structures: Autoimmunity Goes Local
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.01952
– volume: 12
  start-page: 4098
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib62
  article-title: The T cell receptor repertoire of tumor infiltrating T cells is predictive and prognostic for cancer survival
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-24343-x
– volume: 577
  start-page: 561
  year: 2020
  ident: 10.1016/j.celrep.2023.112879_bib54
  article-title: Tertiary lymphoid structures improve immunotherapy and survival in melanoma
  publication-title: Nature
  doi: 10.1038/s41586-019-1914-8
– volume: 12
  start-page: 642800
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib11
  article-title: Paraneoplastic Neurological Syndromes and Beyond Emerging With the Introduction of Immune Checkpoint Inhibitor Cancer Immunotherapy
  publication-title: Front. Neurol.
  doi: 10.3389/fneur.2021.642800
– volume: 54
  start-page: 586
  year: 2021
  ident: 10.1016/j.celrep.2023.112879_bib63
  article-title: Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery
  publication-title: Immunity
  doi: 10.1016/j.immuni.2021.02.014
– volume: 173
  start-page: 291
  year: 2018
  ident: 10.1016/j.celrep.2023.112879_bib93
  article-title: Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
  publication-title: Cell
  doi: 10.1016/j.cell.2018.03.022
– volume: 243
  start-page: 81
  year: 2012
  ident: 10.1016/j.celrep.2023.112879_bib74
  article-title: Key role of CXCL13/CXCR5 axis for cerebrospinal fluid B cell recruitment in pediatric OMS
  publication-title: J. Neuroimmunol.
  doi: 10.1016/j.jneuroim.2011.12.014
SSID ssj0000601194
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Snippet Neuroblastoma is a lethal childhood solid tumor of developing peripheral nerves. Two percent of children with neuroblastoma develop opsoclonus myoclonus ataxia...
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StartPage 112879
SubjectTerms Ataxia
Autoantibodies
Autoimmunity
Child
CP: Cancer
CP: Immunology
Genes, MHC Class II
Humans
IgH
immune profiling
myoclonus
neuroblastoma
Neuroblastoma - complications
Neuroblastoma - metabolism
opsoclonus
Opsoclonus-Myoclonus Syndrome - complications
Opsoclonus-Myoclonus Syndrome - pathology
paraneoplastic
repertoires
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Title Polyclonal lymphoid expansion drives paraneoplastic autoimmunity in neuroblastoma
URI https://dx.doi.org/10.1016/j.celrep.2023.112879
https://www.ncbi.nlm.nih.gov/pubmed/37537844
https://www.proquest.com/docview/2846923625
https://pubmed.ncbi.nlm.nih.gov/PMC10551040
https://doaj.org/article/506516905d124cd99326d2bc5f05f4f1
Volume 42
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