Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence

Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound alterations of the epigenome, a systematic view of epigenetic factors in regulating senescence is lacking. Here, we curated a library of short hairp...

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Published inMolecular cell Vol. 73; no. 4; pp. 684 - 698.e8
Main Authors Sen, Payel, Lan, Yemin, Li, Catherine Y., Sidoli, Simone, Donahue, Greg, Dou, Zhixun, Frederick, Brian, Chen, Qijun, Luense, Lacey J., Garcia, Benjamin A., Dang, Weiwei, Johnson, F. Bradley, Adams, Peter D., Schultz, David C., Berger, Shelley L.
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Published United States Elsevier Inc 21.02.2019
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Abstract Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound alterations of the epigenome, a systematic view of epigenetic factors in regulating senescence is lacking. Here, we curated a library of short hairpin RNAs for targeted silencing of all known epigenetic proteins and performed a high-throughput screen to identify key candidates whose downregulation can delay replicative senescence of primary human cells. This screen identified multiple new players including the histone acetyltransferase p300 that was found to be a primary driver of the senescent phenotype. p300, but not the paralogous CBP, induces a dynamic hyper-acetylated chromatin state and promotes the formation of active enhancer elements in the non-coding genome, leading to a senescence-specific gene expression program. Our work illustrates a causal role of histone acetyltransferases and acetylation in senescence and suggests p300 as a potential therapeutic target for senescence and age-related diseases. [Display omitted] •High-throughput screening identifies key epigenetic proteins driving senescence•Depletion of the histone acetyltransferase p300 delays senescence•p300 induces the formation of de novo super enhancers in senescence•Depletion of p300 suppresses senescence-related gene expression Epigenetic dysregulation is a hallmark of senescence and aging. In this article, Sen et al. have identified the histone acetyltransferase p300 as a key protein regulating senescence from a high-throughput screen. p300 induces formation of new super enhancers that drive senescence-related gene expression. p300 is an attractive candidate for anti-aging therapy.
AbstractList Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound alterations of the epigenome, a systematic view of epigenetic factors in regulating senescence is lacking. Here, we curated a library of short hairpin RNAs for targeted silencing of all known epigenetic proteins and performed a high-throughput screen to identify key candidates whose downregulation can delay replicative senescence of primary human cells. This screen identified multiple new players including the histone acetyltransferase p300 that was found to be a primary driver of the senescent phenotype. p300, but not the paralogous CBP, induces a dynamic hyper-acetylated chromatin state and promotes the formation of active enhancer elements in the non-coding genome, leading to a senescence-specific gene expression program. Our work illustrates a causal role of histone acetyltransferases and acetylation in senescence and suggests p300 as a potential therapeutic target for senescence and age-related diseases. [Display omitted] •High-throughput screening identifies key epigenetic proteins driving senescence•Depletion of the histone acetyltransferase p300 delays senescence•p300 induces the formation of de novo super enhancers in senescence•Depletion of p300 suppresses senescence-related gene expression Epigenetic dysregulation is a hallmark of senescence and aging. In this article, Sen et al. have identified the histone acetyltransferase p300 as a key protein regulating senescence from a high-throughput screen. p300 induces formation of new super enhancers that drive senescence-related gene expression. p300 is an attractive candidate for anti-aging therapy.
Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound alterations of the epigenome, a systematic view of epigenetic factors in regulating senescence is lacking. Here, we curated a library of short hairpin RNAs for targeted silencing of all known epigenetic proteins and performed a high-throughput screen to identify key candidates whose downregulation can delay replicative senescence of primary human cells. This screen identified multiple new players including the histone acetyltransferase p300 that was found to be a primary driver of the senescent phenotype. p300, but not the paralogous CBP, induces a dynamic hyper-acetylated chromatin state and promotes the formation of active enhancer elements in the non-coding genome, leading to a senescence-specific gene expression program. Our work illustrates a causal role of histone acetyltransferases and acetylation in senescence and suggests p300 as a potential therapeutic target for senescence and age-related diseases.
Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound alterations of the epigenome, a systematic view of epigenetic factors in regulating senescence is lacking. Here, we curated a library of short hairpin RNAs for targeted silencing of all known epigenetic proteins and performed a high-throughput screen to identify key candidates whose downregulation can delay replicative senescence of primary human cells. This screen identified multiple new players including the histone acetyltransferase p300 that was found to be a primary driver of the senescent phenotype. p300, but not the paralogous CBP, induces a dynamic hyper-acetylated chromatin state and promotes the formation of active enhancer elements in the non-coding genome, leading to a senescence-specific gene expression program. Our work illustrates a causal role of histone acetyltransferases and acetylation in senescence, and suggests p300 as a potential therapeutic target for senescence and age-related diseases. Epigenetic dysregulation is a hallmark of senescence/aging. In this article, Sen et al. have identified the histone acetyltransferase p300 as a key protein regulating senescence from a high-throughput screen. p300 induces formation of new super enhancers that drive senescence-related gene expression. p300 is an attractive candidate for anti-aging therapy.
Author Adams, Peter D.
Garcia, Benjamin A.
Lan, Yemin
Donahue, Greg
Li, Catherine Y.
Dang, Weiwei
Schultz, David C.
Berger, Shelley L.
Sen, Payel
Dou, Zhixun
Chen, Qijun
Frederick, Brian
Johnson, F. Bradley
Sidoli, Simone
Luense, Lacey J.
AuthorAffiliation 9 Huffington Center on Aging, Baylor College of Medicine, Houston, TX 77030, USA
2 Department of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA
8 Department of Pathology and Laboratory Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
5 Sanford Burnham Prebys Medical Discovery Institute, 10901 North Torrey Pines Road La Jolla, CA 92037, USA
1 Epigenetics Institute, Department of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, PA 19104, USA
4 Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA
6 Institute of Cancer Sciences, University of Glasgow, Glasgow G61 1BD, UK
3 Department of Biology, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA
7 High Throughput Screening Core, Department of Microbiology, University of Pennsylvania, Philadelphia, PA 19104, USA
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P.S., W.D., D.C.S. and S.L.B conceptualized the project. P.S. and C.Y.L. performed all wet lab experiments. Y.L. and G.D. performed bioinformatics. B.F. and D.C.S. constructed the shRNA library. S.S. and B.A.G. contributed to mass spec sample running and analysis. Q.C. and F.B.J. performed the TIF experiments. Z.D., L.J.L., P.D.A. and F.B.J. contributed to screen execution and design of follow-up experiments.
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Snippet Accumulation of senescent cells during aging contributes to chronic inflammation and age-related diseases. While senescence is associated with profound...
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SubjectTerms Acetylation
Cell Proliferation - genetics
Cellular Senescence - genetics
chromatin
Chromatin - enzymology
Chromatin - genetics
Chromatin Assembly and Disassembly - genetics
enhancers
Epigenetic Repression
epigenetics
Fibroblasts - enzymology
HEK293 Cells
High-Throughput Nucleotide Sequencing - methods
Histones - genetics
Histones - metabolism
Humans
p300
p300-CBP Transcription Factors - genetics
p300-CBP Transcription Factors - metabolism
Protein Processing, Post-Translational
RNA Interference
RNA, Small Interfering - genetics
RNA, Small Interfering - metabolism
senescence
Signal Transduction
Time Factors
Transcription, Genetic
Title Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence
URI https://dx.doi.org/10.1016/j.molcel.2019.01.021
https://www.ncbi.nlm.nih.gov/pubmed/30773298
https://search.proquest.com/docview/2183182045
https://pubmed.ncbi.nlm.nih.gov/PMC6688479
Volume 73
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