Continuous Histone Replacement by Hira Is Essential for Normal Transcriptional Regulation and De Novo DNA Methylation during Mouse Oogenesis

The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and -independent assembly pathways. To address the role of histone deposition in the absence of DNA replication, we deleted the H3.3 chaperone Hira i...

Full description

Saved in:
Bibliographic Details
Published inMolecular cell Vol. 60; no. 4; pp. 611 - 625
Main Authors Nashun, Buhe, Hill, Peter W.S., Smallwood, Sebastien A., Dharmalingam, Gopuraja, Amouroux, Rachel, Clark, Stephen J., Sharma, Vineet, Ndjetehe, Elodie, Pelczar, Pawel, Festenstein, Richard J., Kelsey, Gavin, Hajkova, Petra
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 19.11.2015
Cell Press
Subjects
Online AccessGet full text

Cover

Loading…
Abstract The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and -independent assembly pathways. To address the role of histone deposition in the absence of DNA replication, we deleted the H3.3 chaperone Hira in developing mouse oocytes. We show that chromatin of non-replicative developing oocytes is dynamic and that lack of continuous H3.3/H4 deposition alters chromatin structure, resulting in increased DNase I sensitivity, the accumulation of DNA damage, and a severe fertility phenotype. On the molecular level, abnormal chromatin structure leads to a dramatic decrease in the dynamic range of gene expression, the appearance of spurious transcripts, and inefficient de novo DNA methylation. Our study thus unequivocally shows the importance of continuous histone replacement and chromatin homeostasis for transcriptional regulation and normal developmental progression in a non-replicative system in vivo. [Display omitted] •Histone H3/H4 replacement is continuous and mediated by Hira during mouse oogenesis•Loss of Hira results in chromatin abnormalities and extensive oocyte loss•Hira depletion reduces histone load, which prevents normal transcriptional regulation•Hira-mediated histone replacement is required for normal 5mC deposition in oocytes To address the extent to which basic cellular processes depend on replication-independent chromatin assembly in vivo, Nashun et al. deleted histone H3.3 chaperone Hira during mouse oogenesis. Their results demonstrate a critical relationship between continuing histone replacement, chromatin homeostasis, transcriptional regulation, and de novo DNA methylation.
AbstractList The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and -independent assembly pathways. To address the role of histone deposition in the absence of DNA replication, we deleted the H3.3 chaperone Hira in developing mouse oocytes. We show that chromatin of non-replicative developing oocytes is dynamic and that lack of continuous H3.3/H4 deposition alters chromatin structure, resulting in increased DNase I sensitivity, the accumulation of DNA damage, and a severe fertility phenotype. On the molecular level, abnormal chromatin structure leads to a dramatic decrease in the dynamic range of gene expression, the appearance of spurious transcripts, and inefficient de novo DNA methylation. Our study thus unequivocally shows the importance of continuous histone replacement and chromatin homeostasis for transcriptional regulation and normal developmental progression in a non-replicative system in vivo.
The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and -independent assembly pathways. To address the role of histone deposition in the absence of DNA replication, we deleted the H3.3 chaperone Hira in developing mouse oocytes. We show that chromatin of non-replicative developing oocytes is dynamic and that lack of continuous H3.3/H4 deposition alters chromatin structure, resulting in increased DNase I sensitivity, the accumulation of DNA damage, and a severe fertility phenotype. On the molecular level, abnormal chromatin structure leads to a dramatic decrease in the dynamic range of gene expression, the appearance of spurious transcripts, and inefficient de novo DNA methylation. Our study thus unequivocally shows the importance of continuous histone replacement and chromatin homeostasis for transcriptional regulation and normal developmental progression in a non-replicative system in vivo. [Display omitted] •Histone H3/H4 replacement is continuous and mediated by Hira during mouse oogenesis•Loss of Hira results in chromatin abnormalities and extensive oocyte loss•Hira depletion reduces histone load, which prevents normal transcriptional regulation•Hira-mediated histone replacement is required for normal 5mC deposition in oocytes To address the extent to which basic cellular processes depend on replication-independent chromatin assembly in vivo, Nashun et al. deleted histone H3.3 chaperone Hira during mouse oogenesis. Their results demonstrate a critical relationship between continuing histone replacement, chromatin homeostasis, transcriptional regulation, and de novo DNA methylation.
The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and -independent assembly pathways. To address the role of histone deposition in the absence of DNA replication, we deleted the H3.3 chaperone Hira in developing mouse oocytes. We show that chromatin of non-replicative developing oocytes is dynamic and that lack of continuous H3.3/H4 deposition alters chromatin structure, resulting in increased DNase I sensitivity, the accumulation of DNA damage, and a severe fertility phenotype. On the molecular level, abnormal chromatin structure leads to a dramatic decrease in the dynamic range of gene expression, the appearance of spurious transcripts, and inefficient de novo DNA methylation. Our study thus unequivocally shows the importance of continuous histone replacement and chromatin homeostasis for transcriptional regulation and normal developmental progression in a non-replicative system in vivo. • Histone H3/H4 replacement is continuous and mediated by Hira during mouse oogenesis • Loss of Hira results in chromatin abnormalities and extensive oocyte loss • Hira depletion reduces histone load, which prevents normal transcriptional regulation • Hira-mediated histone replacement is required for normal 5mC deposition in oocytes To address the extent to which basic cellular processes depend on replication-independent chromatin assembly in vivo, Nashun et al. deleted histone H3.3 chaperone Hira during mouse oogenesis. Their results demonstrate a critical relationship between continuing histone replacement, chromatin homeostasis, transcriptional regulation, and de novo DNA methylation.
Author Hill, Peter W.S.
Festenstein, Richard J.
Clark, Stephen J.
Smallwood, Sebastien A.
Sharma, Vineet
Pelczar, Pawel
Nashun, Buhe
Ndjetehe, Elodie
Dharmalingam, Gopuraja
Amouroux, Rachel
Kelsey, Gavin
Hajkova, Petra
AuthorAffiliation 2 Epigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, UK
3 Department of Medicine, Division of Brain Sciences, Faculty of Medicine, Imperial College London, London W12 0NN, UK
4 Transgenic and Reproductive Techniques Laboratory, Institute of Laboratory Animal Science, University of Zurich, 8091 Zurich, Switzerland
5 Centre for Trophoblast Research, University of Cambridge, Cambridge CB22 3AT, UK
1 Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
AuthorAffiliation_xml – name: 3 Department of Medicine, Division of Brain Sciences, Faculty of Medicine, Imperial College London, London W12 0NN, UK
– name: 1 Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– name: 2 Epigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, UK
– name: 5 Centre for Trophoblast Research, University of Cambridge, Cambridge CB22 3AT, UK
– name: 4 Transgenic and Reproductive Techniques Laboratory, Institute of Laboratory Animal Science, University of Zurich, 8091 Zurich, Switzerland
Author_xml – sequence: 1
  givenname: Buhe
  surname: Nashun
  fullname: Nashun, Buhe
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 2
  givenname: Peter W.S.
  surname: Hill
  fullname: Hill, Peter W.S.
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 3
  givenname: Sebastien A.
  surname: Smallwood
  fullname: Smallwood, Sebastien A.
  organization: Epigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, UK
– sequence: 4
  givenname: Gopuraja
  surname: Dharmalingam
  fullname: Dharmalingam, Gopuraja
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 5
  givenname: Rachel
  surname: Amouroux
  fullname: Amouroux, Rachel
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 6
  givenname: Stephen J.
  surname: Clark
  fullname: Clark, Stephen J.
  organization: Epigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, UK
– sequence: 7
  givenname: Vineet
  surname: Sharma
  fullname: Sharma, Vineet
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 8
  givenname: Elodie
  surname: Ndjetehe
  fullname: Ndjetehe, Elodie
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 9
  givenname: Pawel
  surname: Pelczar
  fullname: Pelczar, Pawel
  organization: Transgenic and Reproductive Techniques Laboratory, Institute of Laboratory Animal Science, University of Zurich, 8091 Zurich, Switzerland
– sequence: 10
  givenname: Richard J.
  surname: Festenstein
  fullname: Festenstein, Richard J.
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
– sequence: 11
  givenname: Gavin
  surname: Kelsey
  fullname: Kelsey, Gavin
  organization: Epigenetics Programme, The Babraham Institute, Cambridge CB22 3AT, UK
– sequence: 12
  givenname: Petra
  surname: Hajkova
  fullname: Hajkova, Petra
  email: petra.hajkova@csc.mrc.ac.uk
  organization: Medical Research Council Clinical Sciences Centre (MRC CSC), Faculty of Medicine, Imperial College London, London W12 0NN, UK
BackLink https://www.ncbi.nlm.nih.gov/pubmed/26549683$$D View this record in MEDLINE/PubMed
BookMark eNp9Uclu2zAQJYoUzdL-QVHw2IsdLiJlXQoETtoEyAIE6ZngMnJoSKRLSgb8D_noUrCbppeeOPNm5r0ZvlN0FGIAhD5TMqeEyvP1vI-dhW7OCBUFmhNK3qETSpp6VlFZHR1iVktxjE5zXhNCK7FoPqBjJkXVyAU_QS_LGAYfxjhmfO3zUDTwI2w6baGHMGCzK3DS-Cbjq5wL4nWH25jwfUx9CZ-SDtkmvxl8DCV_hNXY6SnBOjh8CaVxG_Hl_QW-g-F5d6i5MfmwwndFFvBDXEGA7PNH9L7VXYZPh_cM_fx-9bS8nt0-_LhZXtzOrGDNMOOGk1q3wI10nHLiiAbjWk0bYVxVW6OppExaZijYlopKuoV0DupGt8waxs_Qtz3vZjQ9OFvOSrpTm-R7nXYqaq_-rQT_rFZxqypZMyomgq8HghR_jZAH1ftcvOh0gHKSojUXDRE146W12rfaFHNO0L7KUKImI9Va7Y1Uk5ETWowsY1_ervg69Me5vzdA-aith6Sy9RAsOJ_ADspF_3-F36Q9t1M
CitedBy_id crossref_primary_10_1042_EBC20180060
crossref_primary_10_1007_s00439_020_02252_1
crossref_primary_10_1083_jcb_201610014
crossref_primary_10_1016_j_celrep_2017_07_011
crossref_primary_10_3390_ijms22031313
crossref_primary_10_3390_biom13121750
crossref_primary_10_1016_j_exphem_2017_01_003
crossref_primary_10_1016_j_gde_2015_12_002
crossref_primary_10_1038_s41467_021_24153_1
crossref_primary_10_1186_s13073_019_0694_y
crossref_primary_10_1530_REP_16_0376
crossref_primary_10_1007_s00018_024_05185_4
crossref_primary_10_1242_dev_141390
crossref_primary_10_1371_journal_pgen_1007042
crossref_primary_10_3389_fcell_2022_826892
crossref_primary_10_1002_mrd_22939
crossref_primary_10_1038_ng_3945
crossref_primary_10_1016_j_molcel_2016_04_006
crossref_primary_10_1038_s41588_019_0428_5
crossref_primary_10_1038_s41419_021_04272_9
crossref_primary_10_1186_s13072_018_0200_6
crossref_primary_10_1186_s12958_021_00776_3
crossref_primary_10_1247_csf_17001
crossref_primary_10_1016_j_stemcr_2021_06_009
crossref_primary_10_1093_genetics_iyad106
crossref_primary_10_12688_f1000research_21513_1
crossref_primary_10_1038_ncomms15775
crossref_primary_10_1007_s10815_016_0706_4
crossref_primary_10_1038_nprot_2016_187
crossref_primary_10_1016_j_gde_2021_01_008
crossref_primary_10_2139_ssrn_3869899
crossref_primary_10_1016_j_celrep_2021_109406
crossref_primary_10_1016_j_jmb_2016_11_019
crossref_primary_10_1038_s41598_021_89052_3
crossref_primary_10_1038_s41594_017_0013_5
crossref_primary_10_1016_j_celrep_2017_08_088
crossref_primary_10_1007_s00412_019_00704_w
crossref_primary_10_1016_j_cub_2016_02_061
crossref_primary_10_1007_s00412_017_0640_y
crossref_primary_10_1038_s41580_020_0262_8
crossref_primary_10_1007_s11427_019_1572_7
crossref_primary_10_1038_s41467_023_39477_3
crossref_primary_10_1073_pnas_1610646113
crossref_primary_10_2217_epi_2016_0056
crossref_primary_10_1016_j_celrep_2022_111393
crossref_primary_10_1038_s41594_020_00521_1
crossref_primary_10_3389_fcell_2022_767773
crossref_primary_10_1093_nar_gkx817
crossref_primary_10_1042_EBC20190043
crossref_primary_10_3390_ani8050071
crossref_primary_10_1016_j_cub_2023_07_032
crossref_primary_10_1093_nar_gkx696
crossref_primary_10_1093_biolre_ioac091
crossref_primary_10_1038_s41586_020_2552_x
crossref_primary_10_1073_pnas_2114743118
crossref_primary_10_3177_jnsv_62_375
crossref_primary_10_1016_j_celrep_2016_09_074
crossref_primary_10_1080_15592294_2020_1741777
crossref_primary_10_1016_j_celrep_2022_111365
crossref_primary_10_1101_cshperspect_a039677
crossref_primary_10_3390_cells13040320
crossref_primary_10_1016_j_cub_2015_12_073
crossref_primary_10_1098_rsob_160207
crossref_primary_10_3390_cells12242828
crossref_primary_10_1038_s10038_018_0433_z
crossref_primary_10_1038_s41580_018_0008_z
crossref_primary_10_1083_jcb_201807044
crossref_primary_10_1002_advs_202308018
crossref_primary_10_1038_s41467_021_24036_5
crossref_primary_10_1242_dev_200044
crossref_primary_10_1016_j_celrep_2020_01_062
crossref_primary_10_1186_s13059_023_02867_3
crossref_primary_10_1262_jrd_2022_122
crossref_primary_10_1186_s12915_018_0573_9
crossref_primary_10_1186_s13072_021_00430_7
crossref_primary_10_1038_s41598_019_42179_w
crossref_primary_10_1002_1873_3468_12343
crossref_primary_10_1016_j_ygeno_2023_110685
crossref_primary_10_3389_fcell_2020_597498
Cites_doi 10.1242/dev.051805
10.1095/biolreprod.104.031757
10.1242/dev.095513
10.1128/MCB.24.10.4309-4320.2004
10.1016/j.cell.2013.08.061
10.1371/journal.pgen.1004964
10.1016/j.ydbio.2006.01.008
10.1038/nature02633
10.1038/nbt.1621
10.1016/j.tig.2011.09.004
10.1074/jbc.M109.089433
10.1016/S1097-2765(02)00526-9
10.1016/j.devcel.2014.06.022
10.1371/journal.pgen.1003439
10.1002/mc.2940050406
10.1038/46567
10.1387/ijdb.120152gk
10.1016/j.cell.2010.01.004
10.1038/ng.864
10.1074/jbc.M512170200
10.1371/journal.pgen.1002440
10.1038/nsmb.2461
10.1016/j.cell.2010.01.003
10.1016/j.ccr.2014.07.028
10.1038/nsmb.2839
10.1016/j.cub.2009.09.021
10.1128/MCB.00698-09
10.1186/s13059-015-0769-z
10.1038/ng1637
10.1038/nmeth.3035
10.1016/j.tibs.2014.10.004
10.1016/S0092-8674(03)01064-X
10.1038/ncb2089
10.1038/nature13899
10.1186/gb-2013-14-10-r121
10.1016/j.ydbio.2005.08.023
10.1016/j.cell.2006.08.049
10.1073/pnas.1635158100
10.1101/gad.347705
10.1038/nrg3673
10.1371/journal.pgen.1002279
10.1101/gad.495809
10.1016/j.neuron.2015.06.014
10.1186/1756-8935-6-7
10.1126/science.1186777
10.1038/nature04059
10.1038/nrm3531
10.1038/nature14176
10.1126/science.1187945
10.1016/j.celrep.2013.03.026
10.1146/annurev-biochem-060713-035536
10.1016/j.cub.2009.05.048
10.1016/j.cell.2013.08.029
ContentType Journal Article
Copyright 2015 The Authors
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.
2015 The Authors 2015
Copyright_xml – notice: 2015 The Authors
– notice: Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.
– notice: 2015 The Authors 2015
DBID 6I.
AAFTH
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7X8
5PM
DOI 10.1016/j.molcel.2015.10.010
DatabaseName ScienceDirect Open Access Titles
Elsevier:ScienceDirect:Open Access
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
CrossRef
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
CrossRef
MEDLINE - Academic
DatabaseTitleList MEDLINE


Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 1097-4164
EndPage 625
ExternalDocumentID 10_1016_j_molcel_2015_10_010
26549683
S1097276515007777
Genre Research Support, Non-U.S. Gov't
Journal Article
GrantInformation_xml – fundername: Medical Research Council
  grantid: MR/J007943/1
– fundername: Medical Research Council
  grantid: MC_U120081321
– fundername: Medical Research Council
  grantid: MC_US_A652_5PY70
– fundername: Medical Research Council
  grantid: MR/K011332/1
– fundername: Medical Research Council
  grantid: MC_U120092689
– fundername: Biotechnology and Biological Sciences Research Council
GroupedDBID ---
--K
-DZ
-~X
0R~
123
1~5
2WC
4.4
457
4G.
5RE
62-
6I.
7-5
AACTN
AAEDT
AAEDW
AAFTH
AAIAV
AAKRW
AAKUH
AALRI
AAUCE
AAVLU
AAXJY
AAXUO
ABJNI
ABMAC
ABMWF
ABVKL
ACGFO
ACGFS
ACNCT
ADBBV
ADEZE
ADJPV
AEFWE
AENEX
AEXQZ
AFFNX
AFTJW
AGHFR
AGKMS
AITUG
ALKID
ALMA_UNASSIGNED_HOLDINGS
AMRAJ
ASPBG
AVWKF
AZFZN
BAWUL
CS3
DIK
DU5
E3Z
EBS
EJD
F5P
FCP
FDB
FEDTE
FIRID
HH5
HVGLF
IH2
IHE
IXB
J1W
JIG
KQ8
L7B
M3Z
M41
N9A
NCXOZ
O-L
O9-
OK1
P2P
RCE
RIG
ROL
RPZ
SDG
SES
SSZ
TR2
WQ6
ZA5
0SF
AAHBH
AAMRU
ADVLN
AKAPO
AKRWK
CGR
CUY
CVF
ECM
EIF
NPM
.55
.GJ
29M
3O-
53G
5VS
AAIKJ
AAQFI
AAQXK
AAYXX
ADMUD
CITATION
FGOYB
HZ~
OZT
R2-
UHS
X7M
ZGI
ZXP
7X8
5PM
ID FETCH-LOGICAL-c529t-3b307afe3b6d3130d0aebdfa195bd47cba16126c2b1ecf1546d86dde79af2cb23
IEDL.DBID ABVKL
ISSN 1097-2765
IngestDate Tue Sep 17 21:25:50 EDT 2024
Fri Oct 25 23:58:21 EDT 2024
Thu Sep 26 17:40:13 EDT 2024
Sat Sep 28 08:29:42 EDT 2024
Fri Feb 23 02:30:32 EST 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 4
Language English
License http://creativecommons.org/licenses/by-nc-nd/4.0
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c529t-3b307afe3b6d3130d0aebdfa195bd47cba16126c2b1ecf1546d86dde79af2cb23
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Present address: TMCF, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
OpenAccessLink https://www.sciencedirect.com/science/article/pii/S1097276515007777
PMID 26549683
PQID 1735905723
PQPubID 23479
PageCount 15
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_4672152
proquest_miscellaneous_1735905723
crossref_primary_10_1016_j_molcel_2015_10_010
pubmed_primary_26549683
elsevier_sciencedirect_doi_10_1016_j_molcel_2015_10_010
PublicationCentury 2000
PublicationDate 2015-11-19
PublicationDateYYYYMMDD 2015-11-19
PublicationDate_xml – month: 11
  year: 2015
  text: 2015-11-19
  day: 19
PublicationDecade 2010
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle Molecular cell
PublicationTitleAlternate Mol Cell
PublicationYear 2015
Publisher Elsevier Inc
Cell Press
Publisher_xml – name: Elsevier Inc
– name: Cell Press
References Smallwood, Kelsey (bib42) 2012; 28
Tomizawa, Nowacka-Woszuk, Kelsey (bib48) 2012; 56
De La Fuente (bib10) 2006; 292
Greenall, Williams, Martin, Palmer, Gray, Liu, Whitehall (bib14) 2006; 281
Yang, Han, De Carvalho, Lay, Jones, Liang (bib53) 2014; 26
Akiyama, Suzuki, Matsuda, Aoki (bib2) 2011; 7
Li, Albertini (bib25) 2013; 14
Polo, Roche, Almouzni (bib36) 2006; 127
Adam, Polo, Almouzni (bib1) 2013; 155
Ray-Gallet, Quivy, Scamps, Martini, Lipinski, Almouzni (bib38) 2002; 9
Smallwood, Tomizawa, Krueger, Ruf, Carli, Segonds-Pichon, Sato, Hata, Andrews, Kelsey (bib43) 2011; 43
Dhayalan, Rajavelu, Rathert, Tamas, Jurkowska, Ragozin, Jeltsch (bib12) 2010; 285
Kraushaar, Jin, Maunakea, Abraham, Ha, Zhao (bib23) 2013; 14
Bush, Yuen, Barrilleaux, Riggs, O’Geen, Cotterman, Knoepfler (bib8) 2013; 6
Ransom, Dennehey, Tyler (bib37) 2010; 140
Wyrick, Holstege, Jennings, Causton, Shore, Grunstein, Lander, Young (bib52) 1999; 402
Shirane, Toh, Kobayashi, Miura, Chiba, Ito, Kono, Sasaki (bib41) 2013; 9
Gurard-Levin, Quivy, Almouzni (bib16) 2014; 83
Smallwood, Lee, Angermueller, Krueger, Saadeh, Peat, Andrews, Stegle, Reik, Kelsey (bib44) 2014; 11
Santenard, Ziegler-Birling, Koch, Tora, Bannister, Torres-Padilla (bib40) 2010; 12
Hajkova, Jeffries, Lee, Miller, Jackson, Surani (bib17) 2010; 329
Guo, Wang, Li, Ding, Xiao, Yin, He, Shi, Dong, Li (bib15) 2015; 517
Tang, Jacobs, Mattiske, Soh, Graham, Tran, Lim, Hudson, Kalitsis, O’Bryan (bib46) 2015; 11
Trapnell, Williams, Pertea, Mortazavi, Kwan, van Baren, Salzberg, Wold, Pachter (bib49) 2010; 28
Blackwell, Martin, Greenall, Pidoux, Allshire, Whitehall (bib6) 2004; 24
Lin, Koh, Wong, Conti, Ramalho-Santos (bib27) 2014; 30
Ljungman, Hanawalt (bib28) 1992; 5
Sakai, Schwartz, Goldstein, Ahmad (bib39) 2009; 19
Baubec, Colombo, Wirbelauer, Schmidt, Burger, Krebs, Akalin, Schübeler (bib5) 2015; 520
Goldberg, Banaszynski, Noh, Lewis, Elsaesser, Stadler, Dewell, Law, Guo, Li (bib13) 2010; 140
Maze, Wenderski, Noh, Bagot, Tzavaras, Purushothaman, Elsässer, Guo, Ionete, Hurd (bib31) 2015; 87
Tagami, Ray-Gallet, Almouzni, Nakatani (bib45) 2004; 116
Hoek, Stillman (bib19) 2003; 100
Inoue, Zhang (bib20) 2014; 21
Lin, Conti, Ramalho-Santos (bib26) 2013; 140
Veselovska, Smallwood, Saadeh, Stewart, Krueger, Maupetit-Méhouas, Arnaud, Tomizawa, Andrews, Kelsey (bib50) 2015; 16
Lan, Xu, Cooney (bib24) 2004; 71
Wirbelauer, Bell, Schübeler (bib51) 2005; 19
Deal, Henikoff, Henikoff (bib11) 2010; 328
Teves, Weber, Henikoff (bib47) 2014; 39
Kobayashi, Sakurai, Imai, Takahashi, Fukuda, Yayoi, Sato, Nakabayashi, Hata, Sotomaru (bib22) 2012; 8
Anderson, Wardle, Korkut, Murton, López-Maury, Bähler, Whitehall (bib3) 2009; 29
Kaneda, Okano, Hata, Sado, Tsujimoto, Li, Sasaki (bib21) 2004; 429
Loppin, Bonnefoy, Anselme, Laurençon, Karr, Couble (bib29) 2005; 437
Hödl, Basler (bib18) 2009; 19
Maze, Noh, Soshnev, Allis (bib30) 2014; 15
Chotalia, Smallwood, Ruf, Dawson, Lucifero, Frontera, James, Dean, Kelsey (bib9) 2009; 23
Mito, Henikoff, Henikoff (bib32) 2005; 37
Pchelintsev, McBryan, Rai, van Tuyn, Ray-Gallet, Almouzni, Adams (bib35) 2013; 3
Burgess, Zhang (bib7) 2013; 20
Pan, O’brien, Wigglesworth, Eppig, Schultz (bib34) 2005; 286
Banaszynski, Wen, Dewell, Whitcomb, Lin, Diaz, Elsässer, Chapgier, Goldberg, Canaani (bib4) 2013; 155
Nashun, Yukawa, Liu, Akiyama, Aoki (bib33) 2010; 137
26643846 - Nat Struct Mol Biol. 2015 Dec;22(12):947
Adam (10.1016/j.molcel.2015.10.010_bib1) 2013; 155
Maze (10.1016/j.molcel.2015.10.010_bib31) 2015; 87
Gurard-Levin (10.1016/j.molcel.2015.10.010_bib16) 2014; 83
Smallwood (10.1016/j.molcel.2015.10.010_bib43) 2011; 43
Yang (10.1016/j.molcel.2015.10.010_bib53) 2014; 26
Ray-Gallet (10.1016/j.molcel.2015.10.010_bib38) 2002; 9
Chotalia (10.1016/j.molcel.2015.10.010_bib9) 2009; 23
Kraushaar (10.1016/j.molcel.2015.10.010_bib23) 2013; 14
Banaszynski (10.1016/j.molcel.2015.10.010_bib4) 2013; 155
Greenall (10.1016/j.molcel.2015.10.010_bib14) 2006; 281
Ljungman (10.1016/j.molcel.2015.10.010_bib28) 1992; 5
Li (10.1016/j.molcel.2015.10.010_bib25) 2013; 14
Anderson (10.1016/j.molcel.2015.10.010_bib3) 2009; 29
Bush (10.1016/j.molcel.2015.10.010_bib8) 2013; 6
Inoue (10.1016/j.molcel.2015.10.010_bib20) 2014; 21
Wyrick (10.1016/j.molcel.2015.10.010_bib52) 1999; 402
Trapnell (10.1016/j.molcel.2015.10.010_bib49) 2010; 28
Smallwood (10.1016/j.molcel.2015.10.010_bib42) 2012; 28
Kobayashi (10.1016/j.molcel.2015.10.010_bib22) 2012; 8
Polo (10.1016/j.molcel.2015.10.010_bib36) 2006; 127
Lin (10.1016/j.molcel.2015.10.010_bib27) 2014; 30
Loppin (10.1016/j.molcel.2015.10.010_bib29) 2005; 437
Hoek (10.1016/j.molcel.2015.10.010_bib19) 2003; 100
Blackwell (10.1016/j.molcel.2015.10.010_bib6) 2004; 24
Hödl (10.1016/j.molcel.2015.10.010_bib18) 2009; 19
Teves (10.1016/j.molcel.2015.10.010_bib47) 2014; 39
Dhayalan (10.1016/j.molcel.2015.10.010_bib12) 2010; 285
Akiyama (10.1016/j.molcel.2015.10.010_bib2) 2011; 7
Ransom (10.1016/j.molcel.2015.10.010_bib37) 2010; 140
De La Fuente (10.1016/j.molcel.2015.10.010_bib10) 2006; 292
Nashun (10.1016/j.molcel.2015.10.010_bib33) 2010; 137
Deal (10.1016/j.molcel.2015.10.010_bib11) 2010; 328
Hajkova (10.1016/j.molcel.2015.10.010_bib17) 2010; 329
Baubec (10.1016/j.molcel.2015.10.010_bib5) 2015; 520
Burgess (10.1016/j.molcel.2015.10.010_bib7) 2013; 20
Maze (10.1016/j.molcel.2015.10.010_bib30) 2014; 15
Tomizawa (10.1016/j.molcel.2015.10.010_bib48) 2012; 56
Mito (10.1016/j.molcel.2015.10.010_bib32) 2005; 37
Sakai (10.1016/j.molcel.2015.10.010_bib39) 2009; 19
Lan (10.1016/j.molcel.2015.10.010_bib24) 2004; 71
Pchelintsev (10.1016/j.molcel.2015.10.010_bib35) 2013; 3
Shirane (10.1016/j.molcel.2015.10.010_bib41) 2013; 9
Guo (10.1016/j.molcel.2015.10.010_bib15) 2015; 517
Pan (10.1016/j.molcel.2015.10.010_bib34) 2005; 286
Wirbelauer (10.1016/j.molcel.2015.10.010_bib51) 2005; 19
Tang (10.1016/j.molcel.2015.10.010_bib46) 2015; 11
Smallwood (10.1016/j.molcel.2015.10.010_bib44) 2014; 11
Lin (10.1016/j.molcel.2015.10.010_bib26) 2013; 140
Goldberg (10.1016/j.molcel.2015.10.010_bib13) 2010; 140
Tagami (10.1016/j.molcel.2015.10.010_bib45) 2004; 116
Santenard (10.1016/j.molcel.2015.10.010_bib40) 2010; 12
Kaneda (10.1016/j.molcel.2015.10.010_bib21) 2004; 429
Veselovska (10.1016/j.molcel.2015.10.010_bib50) 2015; 16
References_xml – volume: 11
  start-page: e1004964
  year: 2015
  ident: bib46
  article-title: Contribution of the two genes encoding histone variant h3.3 to viability and fertility in mice
  publication-title: PLoS Genet.
  contributor:
    fullname: O’Bryan
– volume: 140
  start-page: 678
  year: 2010
  end-page: 691
  ident: bib13
  article-title: Distinct factors control histone variant H3.3 localization at specific genomic regions
  publication-title: Cell
  contributor:
    fullname: Li
– volume: 11
  start-page: 817
  year: 2014
  end-page: 820
  ident: bib44
  article-title: Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
  publication-title: Nat. Methods
  contributor:
    fullname: Kelsey
– volume: 23
  start-page: 105
  year: 2009
  end-page: 117
  ident: bib9
  article-title: Transcription is required for establishment of germline methylation marks at imprinted genes
  publication-title: Genes Dev.
  contributor:
    fullname: Kelsey
– volume: 37
  start-page: 1090
  year: 2005
  end-page: 1097
  ident: bib32
  article-title: Genome-scale profiling of histone H3.3 replacement patterns
  publication-title: Nat. Genet.
  contributor:
    fullname: Henikoff
– volume: 12
  start-page: 853
  year: 2010
  end-page: 862
  ident: bib40
  article-title: Heterochromatin formation in the mouse embryo requires critical residues of the histone variant H3.3
  publication-title: Nat. Cell Biol.
  contributor:
    fullname: Torres-Padilla
– volume: 281
  start-page: 8732
  year: 2006
  end-page: 8739
  ident: bib14
  article-title: Hip3 interacts with the HIRA proteins Hip1 and Slm9 and is required for transcriptional silencing and accurate chromosome segregation
  publication-title: J. Biol. Chem.
  contributor:
    fullname: Whitehall
– volume: 19
  start-page: 1816
  year: 2009
  end-page: 1820
  ident: bib39
  article-title: Transcriptional and developmental functions of the H3.3 histone variant in Drosophila
  publication-title: Curr. Biol.
  contributor:
    fullname: Ahmad
– volume: 517
  start-page: 640
  year: 2015
  end-page: 644
  ident: bib15
  article-title: Structural insight into autoinhibition and histone H3-induced activation of DNMT3A
  publication-title: Nature
  contributor:
    fullname: Li
– volume: 15
  start-page: 259
  year: 2014
  end-page: 271
  ident: bib30
  article-title: Every amino acid matters: essential contributions of histone variants to mammalian development and disease
  publication-title: Nat. Rev. Genet.
  contributor:
    fullname: Allis
– volume: 429
  start-page: 900
  year: 2004
  end-page: 903
  ident: bib21
  article-title: Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting
  publication-title: Nature
  contributor:
    fullname: Sasaki
– volume: 16
  start-page: 209
  year: 2015
  ident: bib50
  article-title: Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape
  publication-title: Genome Biol.
  contributor:
    fullname: Kelsey
– volume: 20
  start-page: 14
  year: 2013
  end-page: 22
  ident: bib7
  article-title: Histone chaperones in nucleosome assembly and human disease
  publication-title: Nat. Struct. Mol. Biol.
  contributor:
    fullname: Zhang
– volume: 140
  start-page: 183
  year: 2010
  end-page: 195
  ident: bib37
  article-title: Chaperoning histones during DNA replication and repair
  publication-title: Cell
  contributor:
    fullname: Tyler
– volume: 87
  start-page: 77
  year: 2015
  end-page: 94
  ident: bib31
  article-title: Critical Role of Histone Turnover in Neuronal Transcription and Plasticity
  publication-title: Neuron
  contributor:
    fullname: Hurd
– volume: 140
  start-page: 3624
  year: 2013
  end-page: 3634
  ident: bib26
  article-title: Histone variant H3.3 maintains a decondensed chromatin state essential for mouse preimplantation development
  publication-title: Development
  contributor:
    fullname: Ramalho-Santos
– volume: 402
  start-page: 418
  year: 1999
  end-page: 421
  ident: bib52
  article-title: Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
  publication-title: Nature
  contributor:
    fullname: Young
– volume: 286
  start-page: 493
  year: 2005
  end-page: 506
  ident: bib34
  article-title: Transcript profiling during mouse oocyte development and the effect of gonadotropin priming and development in vitro
  publication-title: Dev. Biol.
  contributor:
    fullname: Schultz
– volume: 5
  start-page: 264
  year: 1992
  end-page: 269
  ident: bib28
  article-title: Efficient protection against oxidative DNA damage in chromatin
  publication-title: Mol. Carcinog.
  contributor:
    fullname: Hanawalt
– volume: 116
  start-page: 51
  year: 2004
  end-page: 61
  ident: bib45
  article-title: Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
  publication-title: Cell
  contributor:
    fullname: Nakatani
– volume: 21
  start-page: 609
  year: 2014
  end-page: 616
  ident: bib20
  article-title: Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes
  publication-title: Nat. Struct. Mol. Biol.
  contributor:
    fullname: Zhang
– volume: 6
  start-page: 7
  year: 2013
  ident: bib8
  article-title: Endogenous mammalian histone H3.3 exhibits chromatin-related functions during development
  publication-title: Epigenetics Chromatin
  contributor:
    fullname: Knoepfler
– volume: 24
  start-page: 4309
  year: 2004
  end-page: 4320
  ident: bib6
  article-title: The Schizosaccharomyces pombe HIRA-like protein Hip1 is required for the periodic expression of histone genes and contributes to the function of complex centromeres
  publication-title: Mol. Cell. Biol.
  contributor:
    fullname: Whitehall
– volume: 83
  start-page: 487
  year: 2014
  end-page: 517
  ident: bib16
  article-title: Histone chaperones: assisting histone traffic and nucleosome dynamics
  publication-title: Annu. Rev. Biochem.
  contributor:
    fullname: Almouzni
– volume: 127
  start-page: 481
  year: 2006
  end-page: 493
  ident: bib36
  article-title: New histone incorporation marks sites of UV repair in human cells
  publication-title: Cell
  contributor:
    fullname: Almouzni
– volume: 155
  start-page: 94
  year: 2013
  end-page: 106
  ident: bib1
  article-title: Transcription recovery after DNA damage requires chromatin priming by the H3.3 histone chaperone HIRA
  publication-title: Cell
  contributor:
    fullname: Almouzni
– volume: 9
  start-page: e1003439
  year: 2013
  ident: bib41
  article-title: Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases
  publication-title: PLoS Genet.
  contributor:
    fullname: Sasaki
– volume: 7
  start-page: e1002279
  year: 2011
  ident: bib2
  article-title: Dynamic replacement of histone H3 variants reprograms epigenetic marks in early mouse embryos
  publication-title: PLoS Genet.
  contributor:
    fullname: Aoki
– volume: 28
  start-page: 511
  year: 2010
  end-page: 515
  ident: bib49
  article-title: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
  publication-title: Nat. Biotechnol.
  contributor:
    fullname: Pachter
– volume: 30
  start-page: 268
  year: 2014
  end-page: 279
  ident: bib27
  article-title: Hira-mediated H3.3 incorporation is required for DNA replication and ribosomal RNA transcription in the mouse zygote
  publication-title: Dev. Cell
  contributor:
    fullname: Ramalho-Santos
– volume: 28
  start-page: 33
  year: 2012
  end-page: 42
  ident: bib42
  article-title: De novo DNA methylation: a germ cell perspective
  publication-title: Trends Genet.
  contributor:
    fullname: Kelsey
– volume: 29
  start-page: 5158
  year: 2009
  end-page: 5167
  ident: bib3
  article-title: The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts
  publication-title: Mol. Cell. Biol.
  contributor:
    fullname: Whitehall
– volume: 285
  start-page: 26114
  year: 2010
  end-page: 26120
  ident: bib12
  article-title: The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation
  publication-title: J. Biol. Chem.
  contributor:
    fullname: Jeltsch
– volume: 56
  start-page: 867
  year: 2012
  end-page: 875
  ident: bib48
  article-title: DNA methylation establishment during oocyte growth: mechanisms and significance
  publication-title: Int. J. Dev. Biol.
  contributor:
    fullname: Kelsey
– volume: 437
  start-page: 1386
  year: 2005
  end-page: 1390
  ident: bib29
  article-title: The histone H3.3 chaperone HIRA is essential for chromatin assembly in the male pronucleus
  publication-title: Nature
  contributor:
    fullname: Couble
– volume: 155
  start-page: 107
  year: 2013
  end-page: 120
  ident: bib4
  article-title: Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells
  publication-title: Cell
  contributor:
    fullname: Canaani
– volume: 292
  start-page: 1
  year: 2006
  end-page: 12
  ident: bib10
  article-title: Chromatin modifications in the germinal vesicle (GV) of mammalian oocytes
  publication-title: Dev. Biol.
  contributor:
    fullname: De La Fuente
– volume: 71
  start-page: 1469
  year: 2004
  end-page: 1474
  ident: bib24
  article-title: Differential oocyte-specific expression of Cre recombinase activity in GDF-9-iCre, Zp3cre, and Msx2Cre transgenic mice
  publication-title: Biol. Reprod.
  contributor:
    fullname: Cooney
– volume: 19
  start-page: 1761
  year: 2005
  end-page: 1766
  ident: bib51
  article-title: Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias
  publication-title: Genes Dev.
  contributor:
    fullname: Schübeler
– volume: 520
  start-page: 243
  year: 2015
  end-page: 247
  ident: bib5
  article-title: Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
  publication-title: Nature
  contributor:
    fullname: Schübeler
– volume: 100
  start-page: 12183
  year: 2003
  end-page: 12188
  ident: bib19
  article-title: Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo
  publication-title: Proc. Natl. Acad. Sci. USA
  contributor:
    fullname: Stillman
– volume: 43
  start-page: 811
  year: 2011
  end-page: 814
  ident: bib43
  article-title: Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
  publication-title: Nat. Genet.
  contributor:
    fullname: Kelsey
– volume: 8
  start-page: e1002440
  year: 2012
  ident: bib22
  article-title: Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
  publication-title: PLoS Genet.
  contributor:
    fullname: Sotomaru
– volume: 3
  start-page: 1012
  year: 2013
  end-page: 1019
  ident: bib35
  article-title: Placing the HIRA histone chaperone complex in the chromatin landscape
  publication-title: Cell Rep.
  contributor:
    fullname: Adams
– volume: 39
  start-page: 577
  year: 2014
  end-page: 586
  ident: bib47
  article-title: Transcribing through the nucleosome
  publication-title: Trends Biochem. Sci.
  contributor:
    fullname: Henikoff
– volume: 9
  start-page: 1091
  year: 2002
  end-page: 1100
  ident: bib38
  article-title: HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis
  publication-title: Mol. Cell
  contributor:
    fullname: Almouzni
– volume: 329
  start-page: 78
  year: 2010
  end-page: 82
  ident: bib17
  article-title: Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway
  publication-title: Science
  contributor:
    fullname: Surani
– volume: 26
  start-page: 577
  year: 2014
  end-page: 590
  ident: bib53
  article-title: Gene body methylation can alter gene expression and is a therapeutic target in cancer
  publication-title: Cancer Cell
  contributor:
    fullname: Liang
– volume: 19
  start-page: 1221
  year: 2009
  end-page: 1226
  ident: bib18
  article-title: Transcription in the absence of histone H3.3
  publication-title: Curr. Biol.
  contributor:
    fullname: Basler
– volume: 137
  start-page: 3785
  year: 2010
  end-page: 3794
  ident: bib33
  article-title: Changes in the nuclear deposition of histone H2A variants during pre-implantation development in mice
  publication-title: Development
  contributor:
    fullname: Aoki
– volume: 14
  start-page: R121
  year: 2013
  ident: bib23
  article-title: Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3
  publication-title: Genome Biol.
  contributor:
    fullname: Zhao
– volume: 328
  start-page: 1161
  year: 2010
  end-page: 1164
  ident: bib11
  article-title: Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
  publication-title: Science
  contributor:
    fullname: Henikoff
– volume: 14
  start-page: 141
  year: 2013
  end-page: 152
  ident: bib25
  article-title: The road to maturation: somatic cell interaction and self-organization of the mammalian oocyte
  publication-title: Nat. Rev. Mol. Cell Biol.
  contributor:
    fullname: Albertini
– volume: 137
  start-page: 3785
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib33
  article-title: Changes in the nuclear deposition of histone H2A variants during pre-implantation development in mice
  publication-title: Development
  doi: 10.1242/dev.051805
  contributor:
    fullname: Nashun
– volume: 71
  start-page: 1469
  year: 2004
  ident: 10.1016/j.molcel.2015.10.010_bib24
  article-title: Differential oocyte-specific expression of Cre recombinase activity in GDF-9-iCre, Zp3cre, and Msx2Cre transgenic mice
  publication-title: Biol. Reprod.
  doi: 10.1095/biolreprod.104.031757
  contributor:
    fullname: Lan
– volume: 140
  start-page: 3624
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib26
  article-title: Histone variant H3.3 maintains a decondensed chromatin state essential for mouse preimplantation development
  publication-title: Development
  doi: 10.1242/dev.095513
  contributor:
    fullname: Lin
– volume: 24
  start-page: 4309
  year: 2004
  ident: 10.1016/j.molcel.2015.10.010_bib6
  article-title: The Schizosaccharomyces pombe HIRA-like protein Hip1 is required for the periodic expression of histone genes and contributes to the function of complex centromeres
  publication-title: Mol. Cell. Biol.
  doi: 10.1128/MCB.24.10.4309-4320.2004
  contributor:
    fullname: Blackwell
– volume: 155
  start-page: 107
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib4
  article-title: Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells
  publication-title: Cell
  doi: 10.1016/j.cell.2013.08.061
  contributor:
    fullname: Banaszynski
– volume: 11
  start-page: e1004964
  year: 2015
  ident: 10.1016/j.molcel.2015.10.010_bib46
  article-title: Contribution of the two genes encoding histone variant h3.3 to viability and fertility in mice
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1004964
  contributor:
    fullname: Tang
– volume: 292
  start-page: 1
  year: 2006
  ident: 10.1016/j.molcel.2015.10.010_bib10
  article-title: Chromatin modifications in the germinal vesicle (GV) of mammalian oocytes
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2006.01.008
  contributor:
    fullname: De La Fuente
– volume: 429
  start-page: 900
  year: 2004
  ident: 10.1016/j.molcel.2015.10.010_bib21
  article-title: Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting
  publication-title: Nature
  doi: 10.1038/nature02633
  contributor:
    fullname: Kaneda
– volume: 28
  start-page: 511
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib49
  article-title: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.1621
  contributor:
    fullname: Trapnell
– volume: 28
  start-page: 33
  year: 2012
  ident: 10.1016/j.molcel.2015.10.010_bib42
  article-title: De novo DNA methylation: a germ cell perspective
  publication-title: Trends Genet.
  doi: 10.1016/j.tig.2011.09.004
  contributor:
    fullname: Smallwood
– volume: 285
  start-page: 26114
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib12
  article-title: The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M109.089433
  contributor:
    fullname: Dhayalan
– volume: 9
  start-page: 1091
  year: 2002
  ident: 10.1016/j.molcel.2015.10.010_bib38
  article-title: HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis
  publication-title: Mol. Cell
  doi: 10.1016/S1097-2765(02)00526-9
  contributor:
    fullname: Ray-Gallet
– volume: 30
  start-page: 268
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib27
  article-title: Hira-mediated H3.3 incorporation is required for DNA replication and ribosomal RNA transcription in the mouse zygote
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2014.06.022
  contributor:
    fullname: Lin
– volume: 9
  start-page: e1003439
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib41
  article-title: Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1003439
  contributor:
    fullname: Shirane
– volume: 5
  start-page: 264
  year: 1992
  ident: 10.1016/j.molcel.2015.10.010_bib28
  article-title: Efficient protection against oxidative DNA damage in chromatin
  publication-title: Mol. Carcinog.
  doi: 10.1002/mc.2940050406
  contributor:
    fullname: Ljungman
– volume: 402
  start-page: 418
  year: 1999
  ident: 10.1016/j.molcel.2015.10.010_bib52
  article-title: Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast
  publication-title: Nature
  doi: 10.1038/46567
  contributor:
    fullname: Wyrick
– volume: 56
  start-page: 867
  year: 2012
  ident: 10.1016/j.molcel.2015.10.010_bib48
  article-title: DNA methylation establishment during oocyte growth: mechanisms and significance
  publication-title: Int. J. Dev. Biol.
  doi: 10.1387/ijdb.120152gk
  contributor:
    fullname: Tomizawa
– volume: 140
  start-page: 183
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib37
  article-title: Chaperoning histones during DNA replication and repair
  publication-title: Cell
  doi: 10.1016/j.cell.2010.01.004
  contributor:
    fullname: Ransom
– volume: 43
  start-page: 811
  year: 2011
  ident: 10.1016/j.molcel.2015.10.010_bib43
  article-title: Dynamic CpG island methylation landscape in oocytes and preimplantation embryos
  publication-title: Nat. Genet.
  doi: 10.1038/ng.864
  contributor:
    fullname: Smallwood
– volume: 281
  start-page: 8732
  year: 2006
  ident: 10.1016/j.molcel.2015.10.010_bib14
  article-title: Hip3 interacts with the HIRA proteins Hip1 and Slm9 and is required for transcriptional silencing and accurate chromosome segregation
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.M512170200
  contributor:
    fullname: Greenall
– volume: 8
  start-page: e1002440
  year: 2012
  ident: 10.1016/j.molcel.2015.10.010_bib22
  article-title: Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1002440
  contributor:
    fullname: Kobayashi
– volume: 20
  start-page: 14
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib7
  article-title: Histone chaperones in nucleosome assembly and human disease
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.2461
  contributor:
    fullname: Burgess
– volume: 140
  start-page: 678
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib13
  article-title: Distinct factors control histone variant H3.3 localization at specific genomic regions
  publication-title: Cell
  doi: 10.1016/j.cell.2010.01.003
  contributor:
    fullname: Goldberg
– volume: 26
  start-page: 577
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib53
  article-title: Gene body methylation can alter gene expression and is a therapeutic target in cancer
  publication-title: Cancer Cell
  doi: 10.1016/j.ccr.2014.07.028
  contributor:
    fullname: Yang
– volume: 21
  start-page: 609
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib20
  article-title: Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/nsmb.2839
  contributor:
    fullname: Inoue
– volume: 19
  start-page: 1816
  year: 2009
  ident: 10.1016/j.molcel.2015.10.010_bib39
  article-title: Transcriptional and developmental functions of the H3.3 histone variant in Drosophila
  publication-title: Curr. Biol.
  doi: 10.1016/j.cub.2009.09.021
  contributor:
    fullname: Sakai
– volume: 29
  start-page: 5158
  year: 2009
  ident: 10.1016/j.molcel.2015.10.010_bib3
  article-title: The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts
  publication-title: Mol. Cell. Biol.
  doi: 10.1128/MCB.00698-09
  contributor:
    fullname: Anderson
– volume: 16
  start-page: 209
  year: 2015
  ident: 10.1016/j.molcel.2015.10.010_bib50
  article-title: Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape
  publication-title: Genome Biol.
  doi: 10.1186/s13059-015-0769-z
  contributor:
    fullname: Veselovska
– volume: 37
  start-page: 1090
  year: 2005
  ident: 10.1016/j.molcel.2015.10.010_bib32
  article-title: Genome-scale profiling of histone H3.3 replacement patterns
  publication-title: Nat. Genet.
  doi: 10.1038/ng1637
  contributor:
    fullname: Mito
– volume: 11
  start-page: 817
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib44
  article-title: Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.3035
  contributor:
    fullname: Smallwood
– volume: 39
  start-page: 577
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib47
  article-title: Transcribing through the nucleosome
  publication-title: Trends Biochem. Sci.
  doi: 10.1016/j.tibs.2014.10.004
  contributor:
    fullname: Teves
– volume: 116
  start-page: 51
  year: 2004
  ident: 10.1016/j.molcel.2015.10.010_bib45
  article-title: Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
  publication-title: Cell
  doi: 10.1016/S0092-8674(03)01064-X
  contributor:
    fullname: Tagami
– volume: 12
  start-page: 853
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib40
  article-title: Heterochromatin formation in the mouse embryo requires critical residues of the histone variant H3.3
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb2089
  contributor:
    fullname: Santenard
– volume: 517
  start-page: 640
  year: 2015
  ident: 10.1016/j.molcel.2015.10.010_bib15
  article-title: Structural insight into autoinhibition and histone H3-induced activation of DNMT3A
  publication-title: Nature
  doi: 10.1038/nature13899
  contributor:
    fullname: Guo
– volume: 14
  start-page: R121
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib23
  article-title: Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3
  publication-title: Genome Biol.
  doi: 10.1186/gb-2013-14-10-r121
  contributor:
    fullname: Kraushaar
– volume: 286
  start-page: 493
  year: 2005
  ident: 10.1016/j.molcel.2015.10.010_bib34
  article-title: Transcript profiling during mouse oocyte development and the effect of gonadotropin priming and development in vitro
  publication-title: Dev. Biol.
  doi: 10.1016/j.ydbio.2005.08.023
  contributor:
    fullname: Pan
– volume: 127
  start-page: 481
  year: 2006
  ident: 10.1016/j.molcel.2015.10.010_bib36
  article-title: New histone incorporation marks sites of UV repair in human cells
  publication-title: Cell
  doi: 10.1016/j.cell.2006.08.049
  contributor:
    fullname: Polo
– volume: 100
  start-page: 12183
  year: 2003
  ident: 10.1016/j.molcel.2015.10.010_bib19
  article-title: Chromatin assembly factor 1 is essential and couples chromatin assembly to DNA replication in vivo
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1635158100
  contributor:
    fullname: Hoek
– volume: 19
  start-page: 1761
  year: 2005
  ident: 10.1016/j.molcel.2015.10.010_bib51
  article-title: Variant histone H3.3 is deposited at sites of nucleosomal displacement throughout transcribed genes while active histone modifications show a promoter-proximal bias
  publication-title: Genes Dev.
  doi: 10.1101/gad.347705
  contributor:
    fullname: Wirbelauer
– volume: 15
  start-page: 259
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib30
  article-title: Every amino acid matters: essential contributions of histone variants to mammalian development and disease
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg3673
  contributor:
    fullname: Maze
– volume: 7
  start-page: e1002279
  year: 2011
  ident: 10.1016/j.molcel.2015.10.010_bib2
  article-title: Dynamic replacement of histone H3 variants reprograms epigenetic marks in early mouse embryos
  publication-title: PLoS Genet.
  doi: 10.1371/journal.pgen.1002279
  contributor:
    fullname: Akiyama
– volume: 23
  start-page: 105
  year: 2009
  ident: 10.1016/j.molcel.2015.10.010_bib9
  article-title: Transcription is required for establishment of germline methylation marks at imprinted genes
  publication-title: Genes Dev.
  doi: 10.1101/gad.495809
  contributor:
    fullname: Chotalia
– volume: 87
  start-page: 77
  year: 2015
  ident: 10.1016/j.molcel.2015.10.010_bib31
  article-title: Critical Role of Histone Turnover in Neuronal Transcription and Plasticity
  publication-title: Neuron
  doi: 10.1016/j.neuron.2015.06.014
  contributor:
    fullname: Maze
– volume: 6
  start-page: 7
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib8
  article-title: Endogenous mammalian histone H3.3 exhibits chromatin-related functions during development
  publication-title: Epigenetics Chromatin
  doi: 10.1186/1756-8935-6-7
  contributor:
    fullname: Bush
– volume: 328
  start-page: 1161
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib11
  article-title: Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
  publication-title: Science
  doi: 10.1126/science.1186777
  contributor:
    fullname: Deal
– volume: 437
  start-page: 1386
  year: 2005
  ident: 10.1016/j.molcel.2015.10.010_bib29
  article-title: The histone H3.3 chaperone HIRA is essential for chromatin assembly in the male pronucleus
  publication-title: Nature
  doi: 10.1038/nature04059
  contributor:
    fullname: Loppin
– volume: 14
  start-page: 141
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib25
  article-title: The road to maturation: somatic cell interaction and self-organization of the mammalian oocyte
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/nrm3531
  contributor:
    fullname: Li
– volume: 520
  start-page: 243
  year: 2015
  ident: 10.1016/j.molcel.2015.10.010_bib5
  article-title: Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
  publication-title: Nature
  doi: 10.1038/nature14176
  contributor:
    fullname: Baubec
– volume: 329
  start-page: 78
  year: 2010
  ident: 10.1016/j.molcel.2015.10.010_bib17
  article-title: Genome-wide reprogramming in the mouse germ line entails the base excision repair pathway
  publication-title: Science
  doi: 10.1126/science.1187945
  contributor:
    fullname: Hajkova
– volume: 3
  start-page: 1012
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib35
  article-title: Placing the HIRA histone chaperone complex in the chromatin landscape
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2013.03.026
  contributor:
    fullname: Pchelintsev
– volume: 83
  start-page: 487
  year: 2014
  ident: 10.1016/j.molcel.2015.10.010_bib16
  article-title: Histone chaperones: assisting histone traffic and nucleosome dynamics
  publication-title: Annu. Rev. Biochem.
  doi: 10.1146/annurev-biochem-060713-035536
  contributor:
    fullname: Gurard-Levin
– volume: 19
  start-page: 1221
  year: 2009
  ident: 10.1016/j.molcel.2015.10.010_bib18
  article-title: Transcription in the absence of histone H3.3
  publication-title: Curr. Biol.
  doi: 10.1016/j.cub.2009.05.048
  contributor:
    fullname: Hödl
– volume: 155
  start-page: 94
  year: 2013
  ident: 10.1016/j.molcel.2015.10.010_bib1
  article-title: Transcription recovery after DNA damage requires chromatin priming by the H3.3 histone chaperone HIRA
  publication-title: Cell
  doi: 10.1016/j.cell.2013.08.029
  contributor:
    fullname: Adam
SSID ssj0014589
Score 2.5292506
Snippet The integrity of chromatin, which provides a dynamic template for all DNA-related processes in eukaryotes, is maintained through replication-dependent and...
SourceID pubmedcentral
proquest
crossref
pubmed
elsevier
SourceType Open Access Repository
Aggregation Database
Index Database
Publisher
StartPage 611
SubjectTerms Animals
Cell Cycle Proteins - genetics
Cell Cycle Proteins - metabolism
Chromatin - metabolism
DNA Methylation
Female
Fertilization
Gene Expression Regulation
Histone Chaperones - genetics
Histone Chaperones - metabolism
Histones - metabolism
Mice
Oocytes - metabolism
Oogenesis
Transcription Factors - genetics
Transcription Factors - metabolism
Transcription, Genetic
Title Continuous Histone Replacement by Hira Is Essential for Normal Transcriptional Regulation and De Novo DNA Methylation during Mouse Oogenesis
URI https://dx.doi.org/10.1016/j.molcel.2015.10.010
https://www.ncbi.nlm.nih.gov/pubmed/26549683
https://search.proquest.com/docview/1735905723
https://pubmed.ncbi.nlm.nih.gov/PMC4672152
Volume 60
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1ZTxsxEB5xqFJfqhbakh7Ilfq6TdbetePHEEBcCRItVdSXla-FregGkYDEf-BHd2aPiNBKlfroS2t7vDOfPRfAZ4sixfu-jXQSQpRoqSObS0maQu6EzkOvR47Co7E8OE-OJulkBYatLwyZVTa8v-bpFbduarrNbnavi6L7lXSnXFEqb4pJo9QqrHNEv_h3rg92vh-fLJQJSVplwqP-EQ1oPegqM69f0ysXSAcRp1_IzItcaf8uof5EoE8NKR9Jpv2X8KKBlGxQz_oVrIRyA57VSSbvN-GBAlAV5S1e8VkVFKQMDGE3PZ_TyyCz91h9Y9jhjO3NyBUJTyRDKMvGBGevWCXNWt6C5bM6ez0WmCk92w3Y8W7KdscDNgpI9qat9n9kI_xsYKfTC-Kpxew1nO_vfRseRE0OhsilXM8jYZEJmDwIK71Aeed7Jlifm1in1ifKWYOQkUvHbRxcjnhM-r5Elqm0ybmzXLyBtRIXtgUszT2ujOLRJCEJjmLpIXYSLpa56gsTdyBq9z27rkNtZK0N2s-splNGdKJapFMHVEucbOnIZCgN_jHyU0vLDP8mUpGYMuB-ZLESqUYIy0UH3ta0XcyFS7xLyz62qCWqLzpQpO7llrK4rCJ2ozSi_MHv_nvG7-E5lcgJMtYfYG1-cxs-Ihqa2-3mtG_D6uFkB0vj4eT0x28W_w-h
link.rule.ids 230,315,783,787,888,3513,27581,27936,27937,45675,45886
linkProvider Elsevier
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1ZbxMxEB6VVgheEOUMUDASr0uy9q4dP5YeSkoTJGilvFm-FhaVTdWkSP0P_Ghm9oiaFgmpj2t7tbZnduaz5wL44FClhDB0ic5iTDItdeIKKclSyL3QRRwMKFB4MpWj0-xols82YK-LhSG3ylb2NzK9ltZtS7_dzf55Wfa_ke2UKyrlTTlplLoHWxR2SWw-nn1amRKwTdcmT60SGt7Fz9VOXr_mZz6SBSLNP5KTFwXS_ls_3cafN90or-mlw8fwqAWUbLeZ8zZsxOoJ3G9KTF49hT-UfqqsLvGAz-qUIFVkCLrp8pzuBZm7wuYLy8YLdrCgQCTkR4ZAlk0JzJ6xWpd1kgWfvza16_GB2Sqw_YgDf8_Z_nSXTSISve1roh_ZBD8b2Zf5d5Ko5eIZnB4enOyNkrYCQ-JzrpeJcCgCbBGFk0GgtgsDG10obKpzFzLlnUXAyKXnLo2-QDQmw1CiwFTaFtw7Lp7DZoULewksLwKujLLRZDGLnjLpIXISPpWFGgqb9iDp9t2cN4k2TOeB9tM0dDJEJ2pFOvVAdcQxawxjUBf85833HS0N_ktkILFVxP0wqRK5RgDLRQ9eNLRdzYVLPEnLIfaoNaqvBlCe7vWeqvxR5-tGXUTVg1_decbv4MHoZHJsjsfTz6_hIfVQOGSq38Dm8uIy7iAuWrq3Nd__BRFgDrw
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Continuous+Histone+Replacement+by+Hira+Is+Essential+for+Normal+Transcriptional+Regulation+and+De+Novo+DNA+Methylation+during+Mouse+Oogenesis&rft.jtitle=Molecular+cell&rft.au=Nashun%2C+Buhe&rft.au=Hill%2C+Peter%C2%A0W.S.&rft.au=Smallwood%2C+Sebastien%C2%A0A.&rft.au=Dharmalingam%2C+Gopuraja&rft.date=2015-11-19&rft.pub=Elsevier+Inc&rft.issn=1097-2765&rft.eissn=1097-4164&rft.volume=60&rft.issue=4&rft.spage=611&rft.epage=625&rft_id=info:doi/10.1016%2Fj.molcel.2015.10.010&rft.externalDocID=S1097276515007777
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1097-2765&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1097-2765&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1097-2765&client=summon