Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms
After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylog...
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| Published in | Proceedings of the Royal Society. B, Biological sciences Vol. 285; no. 1881; p. 20181012 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
England
The Royal Society Publishing
27.06.2018
The Royal Society |
| Edition | Royal Society (Great Britain) |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0962-8452 1471-2954 1471-2954 |
| DOI | 10.1098/rspb.2018.1012 |
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| Abstract | After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus
Ginkgo
is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution. |
|---|---|
| AbstractList | After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus Ginkgo is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution. After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus Ginkgo is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution. After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus Ginkgo is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution.After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus Ginkgo is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution. After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains one of the most controversial issues in seed plant evolution. To resolve the deep phylogeny of seed plants and to address the sources of phylogenetic conflict, we conducted a phylotranscriptomic study with a sampling of all 13 families of gymnosperms and main lineages of angiosperms. Multiple datasets containing up to 1 296 042 sites across 1308 loci were analysed, using concatenation and coalescence approaches. Our study generated a consistent and well-resolved phylogeny of seed plants, which places Gnetales as sister to Pinaceae and thus supports the Gnepine hypothesis. Cycads plus is sister to the remaining gymnosperms. We also found that Gnetales and angiosperms have similar molecular evolutionary rates, which are much higher than those of other gymnosperms. This implies that Gnetales and angiosperms might have experienced similar selective pressures in evolutionary histories. Convergent molecular evolution or homoplasy is partially responsible for the phylogenetic conflicts in seed plants. Our study provides a robustly reconstructed backbone phylogeny that is important for future molecular and morphological studies of seed plants, in particular gymnosperms, in the light of evolution. |
| Author | Ran, Jin-Hua Shen, Ting-Ting Wang, Ming-Ming Wang, Xiao-Quan |
| AuthorAffiliation | 1 State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences , Beijing 100093 , People's Republic of China 2 University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China |
| AuthorAffiliation_xml | – name: 2 University of Chinese Academy of Sciences , Beijing 100049 , People's Republic of China – name: 1 State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences , Beijing 100093 , People's Republic of China |
| Author_xml | – sequence: 1 givenname: Jin-Hua surname: Ran fullname: Ran, Jin-Hua organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People's Republic of China – sequence: 2 givenname: Ting-Ting surname: Shen fullname: Shen, Ting-Ting organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People's Republic of China – sequence: 3 givenname: Ming-Ming surname: Wang fullname: Wang, Ming-Ming organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People's Republic of China – sequence: 4 givenname: Xiao-Quan orcidid: 0000-0003-3978-0828 surname: Wang fullname: Wang, Xiao-Quan organization: State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, People's Republic of China, University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29925623$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1093/molbev/msv026 10.1093/nar/gkl315 10.1093/bioinformatics/btl158 10.1093/gbe/evr105 10.1016/j.cub.2018.01.063 10.1093/gbe/evx070 10.1093/gbe/evt001 10.1093/bioinformatics/btu170 10.1371/journal.pone.0030288 10.1038/nature12511 10.1080/10635150490468648 10.1093/sysbio/syp017 10.1186/s13059-015-0721-2 10.1093/bioinformatics/btq243 10.1016/j.ympev.2008.12.026 10.1016/j.cretres.2017.02.007 10.1016/j.ympev.2016.11.018 10.1016/j.ympev.2014.02.005 10.1371/journal.pone.0080870 10.1093/bioinformatics/17.12.1246 10.1093/molbev/msq170 10.1038/s41559-016-0020 10.1093/bioinformatics/btu033 10.1111/nph.13947 10.1093/molbev/msv081 10.1093/molbev/msu331 10.1016/bs.abr.2017.11.018 10.1002/ajb2.1048 10.1093/molbev/msm088 10.1111/j.1469-8137.2012.04105.x 10.1016/j.bse.2015.02.009 10.1093/sysbio/sys029 10.1093/jhered/esx033 10.1093/molbev/mst010 10.1073/pnas.1323926111 10.1007/s10265-017-0953-1 10.1007/BF02861082 10.1093/molbev/msx069 10.1002/ajb2.1016 10.1186/1471-2148-5-73 10.1093/bioinformatics/btu462 10.1111/j.1469-8137.2007.02306.x 10.1016/j.ympev.2008.09.009 10.1038/nprot.2013.084 10.1007/s10342-012-0602-0 10.1371/journal.pgen.1002411 10.1016/j.ympev.2013.09.011 10.1111/nyas.12747 10.1038/nbt.1883 10.1038/nrg1603 10.3732/ajb.1200416 |
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| Issue | 1881 |
| Keywords | phylogeny gymnosperms seed plants Gnepine hypothesis phylotranscriptomics homoplasy |
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| References_xml | – ident: e_1_3_6_48_2 doi: 10.1093/molbev/msv026 – ident: e_1_3_6_30_2 doi: 10.1093/nar/gkl315 – ident: e_1_3_6_24_2 doi: 10.1093/bioinformatics/btl158 – ident: e_1_3_6_7_2 doi: 10.1093/gbe/evr105 – ident: e_1_3_6_10_2 doi: 10.1016/j.cub.2018.01.063 – ident: e_1_3_6_4_2 doi: 10.1093/gbe/evx070 – ident: e_1_3_6_18_2 doi: 10.1093/gbe/evt001 – ident: e_1_3_6_21_2 doi: 10.1093/bioinformatics/btu170 – ident: e_1_3_6_26_2 doi: 10.1371/journal.pone.0030288 – ident: e_1_3_6_39_2 doi: 10.1038/nature12511 – ident: e_1_3_6_15_2 doi: 10.1080/10635150490468648 – ident: e_1_3_6_46_2 doi: 10.1093/sysbio/syp017 – ident: e_1_3_6_20_2 doi: 10.1186/s13059-015-0721-2 – ident: e_1_3_6_34_2 doi: 10.1093/bioinformatics/btq243 – ident: e_1_3_6_55_2 – ident: e_1_3_6_43_2 doi: 10.1016/j.ympev.2008.12.026 – ident: e_1_3_6_50_2 doi: 10.1016/j.cretres.2017.02.007 – ident: e_1_3_6_25_2 doi: 10.1016/j.ympev.2016.11.018 – ident: e_1_3_6_2_2 doi: 10.1016/j.ympev.2014.02.005 – ident: e_1_3_6_17_2 doi: 10.1371/journal.pone.0080870 – ident: e_1_3_6_37_2 doi: 10.1093/bioinformatics/17.12.1246 – ident: e_1_3_6_16_2 doi: 10.1093/molbev/msq170 – ident: e_1_3_6_36_2 doi: 10.1038/s41559-016-0020 – ident: e_1_3_6_27_2 doi: 10.1093/bioinformatics/btu033 – ident: e_1_3_6_44_2 doi: 10.1111/nph.13947 – volume: 34 start-page: 772 year: 2017 ident: e_1_3_6_33_2 article-title: PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses publication-title: Mol. Biol. Evol. – ident: e_1_3_6_28_2 doi: 10.1093/molbev/msv081 – ident: e_1_3_6_45_2 doi: 10.1093/molbev/msu331 – ident: e_1_3_6_47_2 doi: 10.1016/bs.abr.2017.11.018 – ident: e_1_3_6_12_2 doi: 10.1002/ajb2.1048 – ident: e_1_3_6_40_2 doi: 10.1093/molbev/msm088 – ident: e_1_3_6_49_2 doi: 10.1111/j.1469-8137.2012.04105.x – ident: e_1_3_6_8_2 doi: 10.1016/j.bse.2015.02.009 – ident: e_1_3_6_32_2 doi: 10.1093/sysbio/sys029 – ident: e_1_3_6_31_2 doi: 10.1093/jhered/esx033 – ident: e_1_3_6_29_2 doi: 10.1093/molbev/mst010 – ident: e_1_3_6_19_2 doi: 10.1073/pnas.1323926111 – ident: e_1_3_6_51_2 doi: 10.1007/s10265-017-0953-1 – ident: e_1_3_6_5_2 doi: 10.1007/BF02861082 – ident: e_1_3_6_9_2 doi: 10.1093/molbev/msx069 – volume-title: Earth system history year: 1999 ident: e_1_3_6_53_2 – ident: e_1_3_6_11_2 doi: 10.1002/ajb2.1016 – ident: e_1_3_6_41_2 doi: 10.1186/1471-2148-5-73 – ident: e_1_3_6_35_2 doi: 10.1093/bioinformatics/btu462 – ident: e_1_3_6_54_2 doi: 10.1111/j.1469-8137.2007.02306.x – ident: e_1_3_6_6_2 doi: 10.1016/j.ympev.2008.09.009 – ident: e_1_3_6_22_2 doi: 10.1038/nprot.2013.084 – ident: e_1_3_6_3_2 doi: 10.1007/s10342-012-0602-0 – ident: e_1_3_6_42_2 doi: 10.1371/journal.pgen.1002411 – ident: e_1_3_6_38_2 doi: 10.1016/j.ympev.2013.09.011 – ident: e_1_3_6_14_2 doi: 10.1111/nyas.12747 – ident: e_1_3_6_23_2 doi: 10.1038/nbt.1883 – ident: e_1_3_6_13_2 doi: 10.1038/nrg1603 – ident: e_1_3_6_52_2 doi: 10.3732/ajb.1200416 |
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| Snippet | After decades of molecular phylogenetic studies, the deep phylogeny of gymnosperms has not been resolved, and the phylogenetic placement of Gnetales remains... |
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| SubjectTerms | Angiosperms Coalescence Coalescing Convergence Cycadopsida - classification Cycadopsida - genetics Evolution Evolution, Molecular Ferns Genes, Plant Genome, Plant Gnetales Gymnosperms Homoplasy Magnoliopsida - classification Magnoliopsida - genetics Molecular chains Molecular evolution Phylogenetics Phylogeny Seeds |
| Title | Phylogenomics resolves the deep phylogeny of seed plants and indicates partial convergent or homoplastic evolution between Gnetales and angiosperms |
| URI | https://www.ncbi.nlm.nih.gov/pubmed/29925623 https://www.proquest.com/docview/2059490400 https://www.proquest.com/docview/2057867812 https://pubmed.ncbi.nlm.nih.gov/PMC6030518 |
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