Function Analysis of the ERF and DREB Subfamilies in Tomato Fruit Development and Ripening
APETALA2/ethylene responsive factors (AP2/ERF) are unique regulators in the plant kingdom and are involved in the whole life activity processes such as development, ripening, and biotic and abiotic stresses. In tomato ( ), there are 140 AP2/ERF genes; however, their functionality remains poorly unde...
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Published in | Frontiers in plant science Vol. 13; p. 849048 |
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Abstract | APETALA2/ethylene responsive factors (AP2/ERF) are unique regulators in the plant kingdom and are involved in the whole life activity processes such as development, ripening, and biotic and abiotic stresses. In tomato (
), there are 140 AP2/ERF genes; however, their functionality remains poorly understood. In this work, the 14th and 19th amino acid differences in the AP2 domain were used to distinguish DREB and ERF subfamily members. Even when the AP2 domain of 68 ERF proteins from 20 plant species and motifs in tomato DREB and ERF proteins were compared, the binding ability of DREB and ERF proteins with DRE/CRT and/or GCC boxes remained unknown. During fruit development and ripening, the expressions of 13 DREB and 19 ERF subfamily genes showed some regular changes, and the promoters of most genes had ARF, DRE/CRT, and/or GCC boxes. This suggests that these genes directly or indirectly respond to IAA and/or ethylene (ET) signals during fruit development and ripening. Moreover, some of these may feedback regulate IAA or ET biosynthesis. In addition, 16 EAR motif-containing ERF genes in tomato were expressed in many organs and their total transcripts per million (TPM) values exceeded those of other ERF genes in most organs. To determine whether the EAR motif in EAR motif-containing ERF proteins has repression function, their EAR motifs were retained or deleted in a yeast one-hybrid (YIH) assay. The results indicate that most of EAR motif-containing ERF proteins lost repression activity after deleting the EAR motif. Moreover, some of these were expressed during ripening. Thus, these EAR motif-containing ERF proteins play vital roles in balancing the regulatory functions of other ERF proteins by completing the DRE/CRT and/or GCC box sites of target genes to ensure normal growth and development in tomato. |
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AbstractList | APETALA2/ethylene responsive factors (AP2/ERF) are unique regulators in the plant kingdom and are involved in the whole life activity processes such as development, ripening, and biotic and abiotic stresses. In tomato (
Solanum lycopersicum
), there are 140 AP2/ERF genes; however, their functionality remains poorly understood. In this work, the 14th and 19th amino acid differences in the AP2 domain were used to distinguish DREB and ERF subfamily members. Even when the AP2 domain of 68 ERF proteins from 20 plant species and motifs in tomato DREB and ERF proteins were compared, the binding ability of DREB and ERF proteins with DRE/CRT and/or GCC boxes remained unknown. During fruit development and ripening, the expressions of 13 DREB and 19 ERF subfamily genes showed some regular changes, and the promoters of most genes had ARF, DRE/CRT, and/or GCC boxes. This suggests that these genes directly or indirectly respond to IAA and/or ethylene (ET) signals during fruit development and ripening. Moreover, some of these may feedback regulate IAA or ET biosynthesis. In addition, 16 EAR motif-containing ERF genes in tomato were expressed in many organs and their total transcripts per million (TPM) values exceeded those of other ERF genes in most organs. To determine whether the EAR motif in EAR motif-containing ERF proteins has repression function, their EAR motifs were retained or deleted in a yeast one-hybrid (YIH) assay. The results indicate that most of EAR motif-containing ERF proteins lost repression activity after deleting the EAR motif. Moreover, some of these were expressed during ripening. Thus, these EAR motif-containing ERF proteins play vital roles in balancing the regulatory functions of other ERF proteins by completing the DRE/CRT and/or GCC box sites of target genes to ensure normal growth and development in tomato. APETALA2/ethylene responsive factors (AP2/ERF) are unique regulators in the plant kingdom and are involved in the whole life activity processes such as development, ripening, and biotic and abiotic stresses. In tomato (Solanum lycopersicum), there are 140 AP2/ERF genes; however, their functionality remains poorly understood. In this work, the 14th and 19th amino acid differences in the AP2 domain were used to distinguish DREB and ERF subfamily members. Even when the AP2 domain of 68 ERF proteins from 20 plant species and motifs in tomato DREB and ERF proteins were compared, the binding ability of DREB and ERF proteins with DRE/CRT and/or GCC boxes remained unknown. During fruit development and ripening, the expressions of 13 DREB and 19 ERF subfamily genes showed some regular changes, and the promoters of most genes had ARF, DRE/CRT, and/or GCC boxes. This suggests that these genes directly or indirectly respond to IAA and/or ethylene (ET) signals during fruit development and ripening. Moreover, some of these may feedback regulate IAA or ET biosynthesis. In addition, 16 EAR motif-containing ERF genes in tomato were expressed in many organs and their total transcripts per million (TPM) values exceeded those of other ERF genes in most organs. To determine whether the EAR motif in EAR motif-containing ERF proteins has repression function, their EAR motifs were retained or deleted in a yeast one-hybrid (YIH) assay. The results indicate that most of EAR motif-containing ERF proteins lost repression activity after deleting the EAR motif. Moreover, some of these were expressed during ripening. Thus, these EAR motif-containing ERF proteins play vital roles in balancing the regulatory functions of other ERF proteins by completing the DRE/CRT and/or GCC box sites of target genes to ensure normal growth and development in tomato. APETALA2/ethylene responsive factors (AP2/ERF) are unique regulators in the plant kingdom and are involved in the whole life activity processes such as development, ripening, and biotic and abiotic stresses. In tomato ( ), there are 140 AP2/ERF genes; however, their functionality remains poorly understood. In this work, the 14th and 19th amino acid differences in the AP2 domain were used to distinguish DREB and ERF subfamily members. Even when the AP2 domain of 68 ERF proteins from 20 plant species and motifs in tomato DREB and ERF proteins were compared, the binding ability of DREB and ERF proteins with DRE/CRT and/or GCC boxes remained unknown. During fruit development and ripening, the expressions of 13 DREB and 19 ERF subfamily genes showed some regular changes, and the promoters of most genes had ARF, DRE/CRT, and/or GCC boxes. This suggests that these genes directly or indirectly respond to IAA and/or ethylene (ET) signals during fruit development and ripening. Moreover, some of these may feedback regulate IAA or ET biosynthesis. In addition, 16 EAR motif-containing ERF genes in tomato were expressed in many organs and their total transcripts per million (TPM) values exceeded those of other ERF genes in most organs. To determine whether the EAR motif in EAR motif-containing ERF proteins has repression function, their EAR motifs were retained or deleted in a yeast one-hybrid (YIH) assay. The results indicate that most of EAR motif-containing ERF proteins lost repression activity after deleting the EAR motif. Moreover, some of these were expressed during ripening. Thus, these EAR motif-containing ERF proteins play vital roles in balancing the regulatory functions of other ERF proteins by completing the DRE/CRT and/or GCC box sites of target genes to ensure normal growth and development in tomato. |
Author | Pang, ShengQun Zheng, Qun Quan, ShaoWen Xu, Tao Zhang, Li Liu, YuFeng Chen, LiJing Liu, YuDong Qi, MingFang |
AuthorAffiliation | 4 Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University , Shihezi , China 5 Key Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University , Shenyang , China 2 College of Bioscience and Biotechnology, Shenyang Agricultural University , Shenyang , China 1 College of Agriculture, Shihezi University , Shihezi , China 3 College of Horticulture, Shenyang Agricultural University , Shenyang , China |
AuthorAffiliation_xml | – name: 3 College of Horticulture, Shenyang Agricultural University , Shenyang , China – name: 2 College of Bioscience and Biotechnology, Shenyang Agricultural University , Shenyang , China – name: 1 College of Agriculture, Shihezi University , Shihezi , China – name: 4 Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University , Shihezi , China – name: 5 Key Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University , Shenyang , China |
Author_xml | – sequence: 1 givenname: Li surname: Zhang fullname: Zhang, Li organization: Key Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University, Shenyang, China – sequence: 2 givenname: LiJing surname: Chen fullname: Chen, LiJing organization: Key Laboratory of Agricultural Biotechnology of Liaoning Province, Shenyang Agricultural University, Shenyang, China – sequence: 3 givenname: ShengQun surname: Pang fullname: Pang, ShengQun organization: Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, China – sequence: 4 givenname: Qun surname: Zheng fullname: Zheng, Qun organization: Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, China – sequence: 5 givenname: ShaoWen surname: Quan fullname: Quan, ShaoWen organization: Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, China – sequence: 6 givenname: YuFeng surname: Liu fullname: Liu, YuFeng organization: College of Horticulture, Shenyang Agricultural University, Shenyang, China – sequence: 7 givenname: Tao surname: Xu fullname: Xu, Tao organization: College of Horticulture, Shenyang Agricultural University, Shenyang, China – sequence: 8 givenname: YuDong surname: Liu fullname: Liu, YuDong organization: Key Laboratory of Special Fruits and Vegetables Cultivation Physiology and Germplasm Resources Utilization Xinjiang of Production and Construction Crops, Shihezi University, Shihezi, China – sequence: 9 givenname: MingFang surname: Qi fullname: Qi, MingFang organization: College of Horticulture, Shenyang Agricultural University, Shenyang, China |
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Copyright | Copyright © 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi. Copyright © 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi. 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi |
Copyright_xml | – notice: Copyright © 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi. – notice: Copyright © 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi. 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi |
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Keywords | tomato (Solanum lycopersicum) AP2/ERF yeast one-hybrid ERF EAR motif DRE/CRT DREB GCC box |
Language | English |
License | Copyright © 2022 Zhang, Chen, Pang, Zheng, Quan, Liu, Xu, Liu and Qi. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Reviewed by: Sixue Chen, University of Florida, United States; Li Zhengguo, Chongqing University, China Edited by: Shunquan Lin, South China Agricultural University, China This article was submitted to Plant Development and EvoDevo, a section of the journal Frontiers in Plant Science |
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Title | Function Analysis of the ERF and DREB Subfamilies in Tomato Fruit Development and Ripening |
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