pH Nonlinearly Dominates Soil Bacterial Community Assembly along an Altitudinal Gradient in Oak-Dominant Forests

Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant for...

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Published inMicroorganisms (Basel) Vol. 12; no. 9; p. 1877
Main Authors Lin, Litao, Li, Guixiang, Yu, Huiyi, Ma, Keming
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 11.09.2024
MDPI
Subjects
Altitude
Assembly
Bacteria
Bar codes
Biodiversity
Biogeochemical cycles
Biological diversity
carbon nitrogen ratio
Clay
clay fraction
Community composition
community structure
Composition
Ecosystems
Environmental factors
environmental filters
Forests
Hydrogen-ion concentration
Hypotheses
law of tolerance
oak forest
Phosphorus
Phylogenetics
Phylogeny
Precipitation
Salinity
Silt
Software
Soil bacteria
Soil chemistry
Soil microbiology
Soil microorganisms
Soil pH
Soil properties
Soils
Species richness
Taxonomy
Vegetation
China
Beijing China
United States > US
altitude
bacteria
environmental filters
law of tolerance
oak forest
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Abstract Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg−1, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg−1, and available phosphorus > 3.0 g kg−1. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
AbstractList Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg−1, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg−1, and available phosphorus > 3.0 g kg−1. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020-1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5-6.5, and an SOC of 25-50 g kg-1, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg-1, and available phosphorus > 3.0 g kg-1. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020-1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5-6.5, and an SOC of 25-50 g kg-1, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg-1, and available phosphorus > 3.0 g kg-1. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020-1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5-6.5, and an SOC of 25-50 g kg , and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg , and available phosphorus > 3.0 g kg . These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg⁻¹, and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg⁻¹, and available phosphorus > 3.0 g kg⁻¹. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg[sup.−1], and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg[sup.−1], and available phosphorus > 3.0 g kg[sup.−1]. These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in response to environmental factors remain far from clear. Here, we took advantage of an altitudinal gradient (1020–1770 asl) in oak-dominant forests and assessed whether soil bacteria linearly or nonlinearly respond to environmental properties through the changes in the community diversity and composition. We found that soil bacteria decreased with increasing altitude in terms of the species richness and phylogenetic structure, while they were unchanged with increasing altitude in terms of community composition. The species richness was nonlinearly affected by the soil pH (19.9%), C:N ratio (14.3%), SOC (11.4%), and silt + clay content (9.9%). Specifically, the species richness peaked at a pH of 5.5–6.5, and an SOC of 25–50 g kg −1 , and it showed abrupt decreases and increases at a C:N ratio of 14.5 and a silt + clay content of 70%. The community composition was significantly affected by the soil pH (28.2%), then by the SOC (3.6%), available phosphorus (1.0%), and silt + clay content (0.5%), and it showed less turnovers at a pH of 6.0, SOC of 50 g kg −1 , and available phosphorus > 3.0 g kg −1 . These findings imply that environmental filtering processes nonlinearly shape bacterial communities.
Audience Academic
Author Ma, Keming
Li, Guixiang
Yu, Huiyi
Lin, Litao
AuthorAffiliation 3 State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
1 Chinese Research Academy of Environmental Sciences, Beijing 100012, China; lin.litao@craes.org.cn
2 Weifang Academy of Agricultural Sciences, Weifang 261071, China; guixiangli2010@163.com
AuthorAffiliation_xml – name: 3 State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085, China
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Issue 9
Keywords altitude
bacteria
environmental filters
law of tolerance
oak forest
Language English
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Snippet Soil bacteria, the predominant microbiota in soil, are subject to the law of minimum and the law of tolerance, but the assembly patterns of soil bacteria in...
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SubjectTerms Altitude
Assembly
Bacteria
Bar codes
Biodiversity
Biogeochemical cycles
Biological diversity
carbon nitrogen ratio
Clay
clay fraction
Community composition
community structure
Composition
Ecosystems
Environmental factors
environmental filters
Forests
Hydrogen-ion concentration
Hypotheses
law of tolerance
oak forest
Phosphorus
Phylogenetics
Phylogeny
Precipitation
Salinity
Silt
Software
Soil bacteria
Soil chemistry
Soil microbiology
Soil microorganisms
Soil pH
Soil properties
Soils
Species richness
Taxonomy
Vegetation
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Title pH Nonlinearly Dominates Soil Bacterial Community Assembly along an Altitudinal Gradient in Oak-Dominant Forests
URI https://www.ncbi.nlm.nih.gov/pubmed/39338551
https://www.proquest.com/docview/3110620318
https://www.proquest.com/docview/3110910658
https://www.proquest.com/docview/3153840411
https://pubmed.ncbi.nlm.nih.gov/PMC11434175
https://doaj.org/article/62af8eb9282a4c19a63e52ec0cc0efae
Volume 12
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