Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons

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Published inApplied and Environmental Microbiology Vol. 66; no. 12; pp. 5282 - 5289
Main Authors GREENE, E. Anne, KAY, Jason G, JABER, Karim, STEHMEIER, L. E. S. G, VOORDOUW, Gerrit
Format Journal Article
LanguageEnglish
Published Washington, DC American Society for Microbiology 01.12.2000
Subjects
Alcaligenes
Alcaligenes - genetics
Alcaligenes - isolation & purification
Alcaligenes - metabolism
Bacteria - genetics
Bacteria - isolation & purification
Bacteria - metabolism
Biodegradation of pollutants
Biodegradation, Environmental
Biological and medical sciences
Biotechnology
DNA, Bacterial - genetics
Ecosystem
Environment and pollution
Fundamental and applied biological sciences. Psychology
Genomics
Hydrocarbons
Hydrocarbons, Aromatic - metabolism
Industrial applications and implications. Economical aspects
Microbiology
Pseudomonas
Pseudomonas - genetics
Pseudomonas - isolation & purification
Pseudomonas - metabolism
Public Health Microbiology
Rhodococcus
Rhodococcus - genetics
Rhodococcus - isolation & purification
Rhodococcus - metabolism
Soil Microbiology
Soil Pollutants - metabolism
Soils
Biodegradation
Pollutant
Soils
Hydrocarbon
Isolate
Population structure
Aromatic compound
Bioremediation
Microbial community
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Abstract Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue AEM About AEM Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy AEM RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0099-2240 Online ISSN: 1098-5336 Copyright © 2014 by the American Society for Microbiology.   For an alternate route to AEM .asm.org, visit: AEM       
AbstractList Soil contaminated with C5+, which contained benzene (45%, wt/wt), dicyclopentadiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%), xylenes (2%), naphthalene (2%), and smaller quantities of other compounds, served as the source for isolation of 55 genomically distinct bacteria (standards). Use of benzene as a substrate by these bacteria was most widespread (31 of 44 standards tested), followed by toluene (23 of 44), xylenes (14 of 44), styrene (10 of 44), and naphthalene (10 of 44). Master filters containing denatured genomic DNAs of all 55 standards were used to analyze the community compositions of C5+ enrichment cultures by reverse sample genome probing (RSGP). The communities enriched from three contaminated soils were similar to those enriched from three uncontaminated soils from the same site. The compositions of these communities were time dependent and showed a succession of Pseudomonas and Rhodococcus spp. before convergence on a composition dominated by Alcaligenes spp. The dominant community members detected by RSGP were capable of benzene degradation at all stages of succession. The enrichments effectively degraded all C5+ components except DCPD. Overall, degradation of individual C5+ hydrocarbons followed first-order kinetics, with the highest rates of removal for benzene.
ABSTRACT Soil contaminated with C5+, which contained benzene (45%, wt/wt), dicyclopentadiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%), xylenes (2%), naphthalene (2%), and smaller quantities of other compounds, served as the source for isolation of 55 genomically distinct bacteria (standards). Use of benzene as a substrate by these bacteria was most widespread (31 of 44 standards tested), followed by toluene (23 of 44), xylenes (14 of 44), styrene (10 of 44), and naphthalene (10 of 44). Master filters containing denatured genomic DNAs of all 55 standards were used to analyze the community compositions of C5+ enrichment cultures by reverse sample genome probing (RSGP). The communities enriched from three contaminated soils were similar to those enriched from three uncontaminated soils from the same site. The compositions of these communities were time dependent and showed a succession of Pseudomonas and Rhodococcus spp. before convergence on a composition dominated by Alcaligenes spp. The dominant community members detected by RSGP were capable of benzene degradation at all stages of succession. The enrichments effectively degraded all C5+ components except DCPD. Overall, degradation of individual C5+ hydrocarbons followed first-order kinetics, with the highest rates of removal for benzene.
Soil contaminated with Ct+, which contained benzene (45%, wt/wt), dicyclopentandiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%), xylenes (2%), naphthalene (2%), and smaller quantities of otehr compounds, served as the source for isolation of 55 genomically distinct bacteria (standards).
Soil contaminated with C5+, which contained benzene (45%, wt/wt), dicyclopentadiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%), xylenes (2%), naphthalene (2%), and smaller quantities of other compounds, served as the source for isolation of 55 genomically distinct bacteria (standards). Use of benzene as a substrate by these bacteria was most widespread (31 of 44 standards tested), followed by toluene (23 of 44), xylenes (14 of 44), styrene (10 of 44), and naphthalene (10 of 44). Master filters containing denatured genomic DNAs of all 55 standards were used to analyze the community compositions of C5+ enrichment cultures by reverse sample genome probing (RSGP). The communities enriched from three contaminated soils were similar to those enriched from three uncontaminated soils from the same site. The compositions of these communities were time dependent and showed a succession of Pseudomonas and Rhodococcus spp. before convergence on a composition dominated by Alcaligenes spp. The dominant community members detected by RSGP were capable of benzene degradation at all stages of succession. The enrichments effectively degraded all C5+ components except DCPD. Overall, degradation of individual C5+ hydrocarbons followed first-order kinetics, with the highest rates of removal for benzene.
Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit StumbleUpon Twitter current issue Spotlights in the Current Issue AEM About AEM Subscribers Authors Reviewers Advertisers Inquiries from the Press Permissions & Commercial Reprints ASM Journals Public Access Policy AEM RSS Feeds 1752 N Street N.W. • Washington DC 20036 202.737.3600 • 202.942.9355 fax • journals@asmusa.org Print ISSN: 0099-2240 Online ISSN: 1098-5336 Copyright © 2014 by the American Society for Microbiology.   For an alternate route to AEM .asm.org, visit: AEM       
Author Gerrit Voordouw
Karim Jaber
Jason G. Kay
E. Anne Greene
Les G. Stehmeier
AuthorAffiliation Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, 1 and NOVA Research and Technology Corporation, Calgary, Alberta T2E 7K7, 2 Canada
AuthorAffiliation_xml – name: Department of Biological Sciences, University of Calgary, Calgary, Alberta T2N 1N4, 1 and NOVA Research and Technology Corporation, Calgary, Alberta T2E 7K7, 2 Canada
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Issue 12
Keywords Biodegradation
Pollutant
Soils
Hydrocarbon
Isolate
Population structure
Aromatic compound
Bioremediation
Microbial community
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Corresponding author. Mailing address: Department of Biological Sciences, University of Calgary, 2500 University Dr. NW, Calgary, Alberta T2N 1N4, Canada. Phone: (403) 220-6388. Fax: (403) 289-9311. E-mail: agreene@ucalgary.ca.
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Snippet Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit...
Soil contaminated with C5+, which contained benzene (45%, wt/wt), dicyclopentadiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%),...
ABSTRACT Soil contaminated with C5+, which contained benzene (45%, wt/wt), dicyclopentadiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene...
Soil contaminated with Ct+, which contained benzene (45%, wt/wt), dicyclopentandiene (DCPD) plus cyclopentadiene (together 20%), toluene (6%), styrene (3%),...
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SubjectTerms Alcaligenes
Alcaligenes - genetics
Alcaligenes - isolation & purification
Alcaligenes - metabolism
Bacteria - genetics
Bacteria - isolation & purification
Bacteria - metabolism
Biodegradation of pollutants
Biodegradation, Environmental
Biological and medical sciences
Biotechnology
DNA, Bacterial - genetics
Ecosystem
Environment and pollution
Fundamental and applied biological sciences. Psychology
Genomics
Hydrocarbons
Hydrocarbons, Aromatic - metabolism
Industrial applications and implications. Economical aspects
Microbiology
Pseudomonas
Pseudomonas - genetics
Pseudomonas - isolation & purification
Pseudomonas - metabolism
Public Health Microbiology
Rhodococcus
Rhodococcus - genetics
Rhodococcus - isolation & purification
Rhodococcus - metabolism
Soil Microbiology
Soil Pollutants - metabolism
Soils
Title Composition of Soil Microbial Communities Enriched on a Mixture of Aromatic Hydrocarbons
URI http://aem.asm.org/content/66/12/5282.abstract
https://www.ncbi.nlm.nih.gov/pubmed/11097903
https://www.proquest.com/docview/205940520
https://search.proquest.com/docview/17839874
https://pubmed.ncbi.nlm.nih.gov/PMC92457
Volume 66
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