Changes in microbiome and metabolomic profiles of fecal samples stored with stabilizing solution at room temperature: a pilot study
The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves association analysis of the population-level microbiome and metabolome data, which requires the appropriate collection, handling, and storage of spec...
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Published in | Scientific reports Vol. 10; no. 1; p. 1789 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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Nature Publishing Group UK
04.02.2020
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Abstract | The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves association analysis of the population-level microbiome and metabolome data, which requires the appropriate collection, handling, and storage of specimens. Simplification of the specimen handling processes will facilitate such investigations. As a pilot study for population-level studies, we collected the fecal samples from three volunteers and tested whether a single sample collection procedure, particularly using OMNIgene-GUT, can be used to reliably obtain both microbiome and metabolome data. We collected fecal samples from three young and healthy Korean adults, stored them at room temperature with and without OMNIgene-GUT solution up to three weeks, and analyzed their microbiome and metabolite profiles. We found that the microbiome profiles were stably maintained in OMNIgene-GUT solution for 21 days, and the abundance relationships among metabolites were well preserved, although their absolute abundances slightly varied over time. Our results show that a single sampling procedure suffices to obtain a fecal sample for collecting gut microbiome and gut metabolome data of an individual. We expect that the health effects of gut microbiome via fecal metabolites can be further understood by increasing the sampling size to the population level. |
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AbstractList | The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves association analysis of the population-level microbiome and metabolome data, which requires the appropriate collection, handling, and storage of specimens. Simplification of the specimen handling processes will facilitate such investigations. As a pilot study for population-level studies, we collected the fecal samples from three volunteers and tested whether a single sample collection procedure, particularly using OMNIgene-GUT, can be used to reliably obtain both microbiome and metabolome data. We collected fecal samples from three young and healthy Korean adults, stored them at room temperature with and without OMNIgene-GUT solution up to three weeks, and analyzed their microbiome and metabolite profiles. We found that the microbiome profiles were stably maintained in OMNIgene-GUT solution for 21 days, and the abundance relationships among metabolites were well preserved, although their absolute abundances slightly varied over time. Our results show that a single sampling procedure suffices to obtain a fecal sample for collecting gut microbiome and gut metabolome data of an individual. We expect that the health effects of gut microbiome via fecal metabolites can be further understood by increasing the sampling size to the population level. Abstract The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves association analysis of the population-level microbiome and metabolome data, which requires the appropriate collection, handling, and storage of specimens. Simplification of the specimen handling processes will facilitate such investigations. As a pilot study for population-level studies, we collected the fecal samples from three volunteers and tested whether a single sample collection procedure, particularly using OMNIgene-GUT, can be used to reliably obtain both microbiome and metabolome data. We collected fecal samples from three young and healthy Korean adults, stored them at room temperature with and without OMNIgene-GUT solution up to three weeks, and analyzed their microbiome and metabolite profiles. We found that the microbiome profiles were stably maintained in OMNIgene-GUT solution for 21 days, and the abundance relationships among metabolites were well preserved, although their absolute abundances slightly varied over time. Our results show that a single sampling procedure suffices to obtain a fecal sample for collecting gut microbiome and gut metabolome data of an individual. We expect that the health effects of gut microbiome via fecal metabolites can be further understood by increasing the sampling size to the population level. |
ArticleNumber | 1789 |
Author | Kim, Hyun-Jin Kim, Bo-Min Ahn, Yongju Hong, Seungpyo Lim, Mi Young Nam, Young-Do |
Author_xml | – sequence: 1 givenname: Mi Young surname: Lim fullname: Lim, Mi Young organization: Research Group of Healthcare, Korea Food Research Institute – sequence: 2 givenname: Seungpyo surname: Hong fullname: Hong, Seungpyo organization: Research Group of Healthcare, Korea Food Research Institute – sequence: 3 givenname: Bo-Min surname: Kim fullname: Kim, Bo-Min organization: EZmass Co., Ltd – sequence: 4 givenname: Yongju surname: Ahn fullname: Ahn, Yongju organization: Theragen Etex Bio Institute – sequence: 5 givenname: Hyun-Jin surname: Kim fullname: Kim, Hyun-Jin organization: EZmass Co., Ltd., Department of Food Science and Technology, Division of Applied Life Sciences (BK21 Plus), Institute of Agriculture and Life Science, Gyeongsang National University – sequence: 6 givenname: Young-Do surname: Nam fullname: Nam, Young-Do email: youngdo98@kfri.re.kr organization: Research Group of Healthcare, Korea Food Research Institute, Department of Food Biotechnology, Korea University of Science and Technology |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32019987$$D View this record in MEDLINE/PubMed |
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Snippet | The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves... Abstract The gut microbiome is related to various host health conditions through metabolites produced by microbiota. Investigating their relationships involves... |
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SubjectTerms | 45/23 631/326/2565/2134 631/45/320 Adult Association analysis Feces Feces - microbiology Female Humanities and Social Sciences Humans Intestinal microflora Male Metabolites Metabolome Metabolomics Microbiomes Microbiota multidisciplinary Pilot Projects Population studies Sampling Science Science (multidisciplinary) Specimen Handling - methods Temperature |
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Title | Changes in microbiome and metabolomic profiles of fecal samples stored with stabilizing solution at room temperature: a pilot study |
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