Integrated analysis of the ubiquitination mechanism reveals the specific signatures of tissue and cancer

• Published in: BMC genomics Vol. 24; no. 1; pp. 1 - 523
• Main Authors: Long, Deyu, Zhang, Ruiqi, Du, Changjian, Tong, Jiapei, Ni, Yu, Zhou, Yaqi, Zuo, Yongchun, Liao, Mingzhi
• Format: Journal Article
• Language: English
• Published: London BioMed Central Ltd 04.09.2023; BioMed Central; BMC
• Subjects: Analysis; Cancer; Cell cycle; Clinical trials; Clustering; Cyclin-dependent kinases; Datasets; Development and progression; Enzymes; Gene expression; Genes; Genetic aspects; Genomics; Heterogeneity; Infertility; Integrative analysis; Kinases; mRNA; Mutation; Oncology, Experimental; Perturbation; Prognostic; Proteins; RNA; Signal transduction; Spermatogenesis; Testes; Ubiquitin; Ubiquitination; Ubiquitination regulator; China
• DOI: 10.1186/s12864-023-09583-z
• ISSN: 1471-2164

Ubiquitination controls almost all cellular processes. The dysregulation of ubiquitination signals is closely associated with the initiation and progression of multiple diseases. However, there is little comprehensive research on the interaction and potential function of ubiquitination regulators (UBRs) in spermatogenesis and cancer. We systematically characterized the mRNA and protein expression of UBRs across tissues and further evaluated their roles in testicular development and spermatogenesis. Subsequently, we explored the genetic alterations, expression perturbations, cancer hallmark-related pathways, and clinical relevance of UBRs in pan-cancer. This work reveals heterogeneity in the expression patterns of UBRs across tissues, and the expression pattern in testis is the most distinct. UBRs are dynamically expressed during testis development, which are critical for normal spermatogenesis. Furthermore, UBRs have widespread genetic alterations and expression perturbations in pan-cancer. The expression of 79 UBRs was identified to be closely correlated with the activity of 32 cancer hallmark-related pathways, and ten hub genes were screened for further clinical relevance analysis by a network-based method. More than 90% of UBRs can affect the survival of cancer patients, and hub genes have an excellent prognostic classification for specific cancer types. Our study provides a comprehensive analysis of UBRs in spermatogenesis and pan-cancer, which can build a foundation for understanding male infertility and developing cancer drugs in the aspect of ubiquitination.