A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance
Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-...
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| Published in | Cell Vol. 170; no. 1; pp. 114 - 126.e15 |
|---|---|
| Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Elsevier Inc
29.06.2017
Elsevier |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C2H2-type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice.
[Display omitted]
•A single base change (SNP33-G) in the bsr-d1 promoter enhances binding to MYBS1•Binding of MYBS1 to the bsr-d1 promoter suppresses bsr-d1 expression•BSR-D1 promotes peroxidase expression, suppressing immunity to M. oryzae•The SNP33-G allele is present in 10% of 3,000 surveyed rice varieties
A natural allele of a C2H2-domain transcription factor gene, bsr-d1, confers broad-spectrum resistance to rice blast. |
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| AbstractList | Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C2H2-type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice. Rice feeds half the world's population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C H -type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H O degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice. Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C2H2-type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice. [Display omitted] •A single base change (SNP33-G) in the bsr-d1 promoter enhances binding to MYBS1•Binding of MYBS1 to the bsr-d1 promoter suppresses bsr-d1 expression•BSR-D1 promotes peroxidase expression, suppressing immunity to M. oryzae•The SNP33-G allele is present in 10% of 3,000 surveyed rice varieties A natural allele of a C2H2-domain transcription factor gene, bsr-d1, confers broad-spectrum resistance to rice blast. Rice feeds half the world's population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C2H2-type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice.Rice feeds half the world's population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has been more effective in controlling crop diseases than race-specific resistance because of its broad spectrum and durability. Through a genome-wide association study, we report the identification of a natural allele of a C2H2-type transcription factor in rice that confers non-race-specific resistance to blast. A survey of 3,000 sequenced rice genomes reveals that this allele exists in 10% of rice, suggesting that this favorable trait has been selected through breeding. This allele causes a single nucleotide change in the promoter of the bsr-d1 gene, which results in reduced expression of the gene through the binding of the repressive MYB transcription factor and, consequently, an inhibition of H2O2 degradation and enhanced disease resistance. Our discovery highlights this novel allele as a strategy for breeding durable resistance in rice. |
| Author | Wang, Kang Chen, Zhixiong Li, Weitao Liu, Jiali He, Min Qin, Peng Wang, Yuping Yang, Chao Chen, Weilan Yin, Junjie Chen, Xuewei Wu, Xianjun Li, Shigui Wang, Jichun Chern, Mawsheng Li, Ping Zhu, Ziwei Wang, Jing Wang, Jirui Zhou, Xiaogang Cheng, Mengping Ran, Li Wang, Wenming Zhu, Xiaobo Zhu, Lihuang Zhao, Wen Ma, Bingtian |
| Author_xml | – sequence: 1 givenname: Weitao surname: Li fullname: Li, Weitao organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 2 givenname: Ziwei surname: Zhu fullname: Zhu, Ziwei organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 3 givenname: Mawsheng surname: Chern fullname: Chern, Mawsheng organization: Department of Plant Pathology, University of California, Davis, Davis, CA 95616, USA – sequence: 4 givenname: Junjie surname: Yin fullname: Yin, Junjie organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 5 givenname: Chao surname: Yang fullname: Yang, Chao organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 6 givenname: Li surname: Ran fullname: Ran, Li organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 7 givenname: Mengping surname: Cheng fullname: Cheng, Mengping organization: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan 611130, China – sequence: 8 givenname: Min surname: He fullname: He, Min organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 9 givenname: Kang surname: Wang fullname: Wang, Kang organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 10 givenname: Jing surname: Wang fullname: Wang, Jing organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 11 givenname: Xiaogang surname: Zhou fullname: Zhou, Xiaogang organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 12 givenname: Xiaobo surname: Zhu fullname: Zhu, Xiaobo organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 13 givenname: Zhixiong surname: Chen fullname: Chen, Zhixiong organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 14 givenname: Jichun surname: Wang fullname: Wang, Jichun organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 15 givenname: Wen surname: Zhao fullname: Zhao, Wen organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 16 givenname: Bingtian surname: Ma fullname: Ma, Bingtian organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 17 givenname: Peng surname: Qin fullname: Qin, Peng organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 18 givenname: Weilan surname: Chen fullname: Chen, Weilan organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 19 givenname: Yuping surname: Wang fullname: Wang, Yuping organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 20 givenname: Jiali surname: Liu fullname: Liu, Jiali organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 21 givenname: Wenming surname: Wang fullname: Wang, Wenming organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 22 givenname: Xianjun surname: Wu fullname: Wu, Xianjun organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 23 givenname: Ping surname: Li fullname: Li, Ping organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 24 givenname: Jirui surname: Wang fullname: Wang, Jirui organization: Triticeae Research Institute, Sichuan Agricultural University, Wenjiang, Chengdu, Sichuan 611130, China – sequence: 25 givenname: Lihuang surname: Zhu fullname: Zhu, Lihuang organization: State Key Laboratory of Plant Genomics and National Center for Plant Gene Research, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 26 givenname: Shigui surname: Li fullname: Li, Shigui organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China – sequence: 27 givenname: Xuewei surname: Chen fullname: Chen, Xuewei email: xwchen88@163.com organization: State Key Laboratory of Hybrid Rice, Key Laboratory of Major Crop Diseases and Collaborative Innovation Center for Hybrid Rice in Yangtze River Basin, Rice Research Institute, Sichuan Agricultural University at Wenjiang, Chengdu, Sichuan 611130, China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/28666113$$D View this record in MEDLINE/PubMed https://www.osti.gov/biblio/1457835$$D View this record in Osti.gov |
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| Snippet | Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has... Rice feeds half the world's population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has... Rice feeds half the world's population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has... Rice feeds half the world’s population, and rice blast is often a destructive disease that results in significant crop loss. Non-race-specific resistance has... |
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| SubjectTerms | alleles Base Sequence blast disease Breeding broad-spectrum C2H2 crop losses Disease Resistance durability Gene Knockout Techniques Genome, Plant Genome-Wide Association Study H2O2 hydrogen peroxide MYB Oryza - genetics Plant Diseases Plant Proteins - genetics Promoter Regions, Genetic reactive oxygen species resistance rice transcription (genetics) transcription factor transcription factors Transcription Factors - genetics |
| Title | A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance |
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