Phytoene Desaturase from Oryza sativa: Oligomeric Assembly, Membrane Association and Preliminary 3D-Analysis
Recombinant phytoene desaturase (PDS-His6) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay system. The protein contains FAD as the sole protein-bound redox-cofactor. Benzoquinones, not replaceable by molecular oxygen, serve as a fin...
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Published in | PloS one Vol. 10; no. 7; p. e0131717 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
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Public Library of Science
06.07.2015
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Abstract | Recombinant phytoene desaturase (PDS-His6) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay system. The protein contains FAD as the sole protein-bound redox-cofactor. Benzoquinones, not replaceable by molecular oxygen, serve as a final electron acceptor defining PDS as a 15-cis-phytoene (donor):plastoquinone oxidoreductase. The herbicidal PDS-inhibitor norflurazon is capable of arresting the reaction by stabilizing the intermediary FAD(red), while an excess of the quinone acceptor relieves this blockage, indicating competition. The enzyme requires its homo-oligomeric association for activity. The sum of data collected through gel permeation chromatography, non-denaturing polyacrylamide electrophoresis, chemical cross-linking, mass spectrometry and electron microscopy techniques indicate that the high-order oligomers formed in solution are the basis for an active preparation. Of these, a tetramer consisting of dimers represents the active unit. This is corroborated by our preliminary X-ray structural analysis that also revealed similarities of the protein fold with the sequence-inhomologous bacterial phytoene desaturase CRTI and other oxidoreductases of the GR2-family of flavoproteins. This points to an evolutionary relatedness of CRTI and PDS yielding different carotene desaturation sequences based on homologous protein folds. |
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AbstractList | Recombinant phytoene desaturase (PDS-His6) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay system. The protein contains FAD as the sole protein-bound redox-cofactor. Benzoquinones, not replaceable by molecular oxygen, serve as a final electron acceptor defining PDS as a 15-cis-phytoene (donor):plastoquinone oxidoreductase. The herbicidal PDS-inhibitor norflurazon is capable of arresting the reaction by stabilizing the intermediary FAD(red), while an excess of the quinone acceptor relieves this blockage, indicating competition. The enzyme requires its homo-oligomeric association for activity. The sum of data collected through gel permeation chromatography, non-denaturing polyacrylamide electrophoresis, chemical cross-linking, mass spectrometry and electron microscopy techniques indicate that the high-order oligomers formed in solution are the basis for an active preparation. Of these, a tetramer consisting of dimers represents the active unit. This is corroborated by our preliminary X-ray structural analysis that also revealed similarities of the protein fold with the sequence-inhomologous bacterial phytoene desaturase CRTI and other oxidoreductases of the GR2-family of flavoproteins. This points to an evolutionary relatedness of CRTI and PDS yielding different carotene desaturation sequences based on homologous protein folds. Recombinant phytoene desaturase (PDS-His 6 ) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay system. The protein contains FAD as the sole protein-bound redox-cofactor. Benzoquinones, not replaceable by molecular oxygen, serve as a final electron acceptor defining PDS as a 15- cis -phytoene (donor):plastoquinone oxidoreductase. The herbicidal PDS-inhibitor norflurazon is capable of arresting the reaction by stabilizing the intermediary FAD red , while an excess of the quinone acceptor relieves this blockage, indicating competition. The enzyme requires its homo-oligomeric association for activity. The sum of data collected through gel permeation chromatography, non-denaturing polyacrylamide electrophoresis, chemical cross-linking, mass spectrometry and electron microscopy techniques indicate that the high-order oligomers formed in solution are the basis for an active preparation. Of these, a tetramer consisting of dimers represents the active unit. This is corroborated by our preliminary X-ray structural analysis that also revealed similarities of the protein fold with the sequence-inhomologous bacterial phytoene desaturase CRTI and other oxidoreductases of the GR2-family of flavoproteins. This points to an evolutionary relatedness of CRTI and PDS yielding different carotene desaturation sequences based on homologous protein folds. Recombinant phytoene desaturase (PDS-His6) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay system. The protein contains FAD as the sole protein-bound redox-cofactor. Benzoquinones, not replaceable by molecular oxygen, serve as a final electron acceptor defining PDS as a 15-cis-phytoene (donor):plastoquinone oxidoreductase. The herbicidal PDS-inhibitor norflurazon is capable of arresting the reaction by stabilizing the intermediary FADred, while an excess of the quinone acceptor relieves this blockage, indicating competition. The enzyme requires its homo-oligomeric association for activity. The sum of data collected through gel permeation chromatography, non-denaturing polyacrylamide electrophoresis, chemical cross-linking, mass spectrometry and electron microscopy techniques indicate that the high-order oligomers formed in solution are the basis for an active preparation. Of these, a tetramer consisting of dimers represents the active unit. This is corroborated by our preliminary X-ray structural analysis that also revealed similarities of the protein fold with the sequence-inhomologous bacterial phytoene desaturase CRTI and other oxidoreductases of the GR2-family of flavoproteins. This points to an evolutionary relatedness of CRTI and PDS yielding different carotene desaturation sequences based on homologous protein folds. |
Author | Drepper, Friedel Rodriguez-Franco, Marta Koschmieder, Julian Einsle, Oliver Beyer, Peter Warscheid, Bettina Schaub, Patrick Gemmecker, Sandra Brausemann, Anton Ghisla, Sandro |
AuthorAffiliation | 5 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany University of Manitoba, CANADA 4 Department of Biology, University of Konstanz, Konstanz, Germany 2 Faculty of Biology, Biochemistry and Functional Proteomics, University of Freiburg, Freiburg, Germany 3 Faculty of Chemistry and Pharmacy, Institute for Biochemistry, University of Freiburg, Freiburg, Germany 1 Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany |
AuthorAffiliation_xml | – name: 2 Faculty of Biology, Biochemistry and Functional Proteomics, University of Freiburg, Freiburg, Germany – name: 4 Department of Biology, University of Konstanz, Konstanz, Germany – name: University of Manitoba, CANADA – name: 5 BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany – name: 1 Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany – name: 3 Faculty of Chemistry and Pharmacy, Institute for Biochemistry, University of Freiburg, Freiburg, Germany |
Author_xml | – sequence: 1 givenname: Sandra surname: Gemmecker fullname: Gemmecker, Sandra organization: Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany – sequence: 2 givenname: Patrick surname: Schaub fullname: Schaub, Patrick organization: Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany – sequence: 3 givenname: Julian surname: Koschmieder fullname: Koschmieder, Julian organization: Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany – sequence: 4 givenname: Anton surname: Brausemann fullname: Brausemann, Anton organization: Faculty of Chemistry and Pharmacy, Institute for Biochemistry, University of Freiburg, Freiburg, Germany – sequence: 5 givenname: Friedel surname: Drepper fullname: Drepper, Friedel organization: Faculty of Biology, Biochemistry and Functional Proteomics, University of Freiburg, Freiburg, Germany – sequence: 6 givenname: Marta surname: Rodriguez-Franco fullname: Rodriguez-Franco, Marta organization: Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany – sequence: 7 givenname: Sandro surname: Ghisla fullname: Ghisla, Sandro organization: Department of Biology, University of Konstanz, Konstanz, Germany – sequence: 8 givenname: Bettina surname: Warscheid fullname: Warscheid, Bettina organization: Faculty of Biology, Biochemistry and Functional Proteomics, University of Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany – sequence: 9 givenname: Oliver surname: Einsle fullname: Einsle, Oliver organization: Faculty of Chemistry and Pharmacy, Institute for Biochemistry, University of Freiburg, Freiburg, Germany; BIOSS Centre for Biological Signalling Studies, University of Freiburg, Freiburg, Germany – sequence: 10 givenname: Peter surname: Beyer fullname: Beyer, Peter organization: Faculty of Biology, Cell Biology, University of Freiburg, Freiburg, Germany |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26147209$$D View this record in MEDLINE/PubMed |
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Copyright | 2015 Gemmecker et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. 2015 Gemmecker et al 2015 Gemmecker et al |
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Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Conceived and designed the experiments: PB OE BW. Performed the experiments: S. Gemmecker AB PS JK MR. Analyzed the data: PB AB OE S. Ghisla FD. Wrote the paper: PB OE FD BW S. Ghisla. Competing Interests: The authors have declared that no competing interests exist. |
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Snippet | Recombinant phytoene desaturase (PDS-His6) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based assay... Recombinant phytoene desaturase (PDS-His 6 ) from rice was purified to near-homogeneity and shown to be enzymatically active in a biphasic, liposome-based... |
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SubjectTerms | Amino acid sequence Antifungal agents Arabidopsis Bacteria Binding sites Biochemistry Biology Biopolymers - chemistry Biosynthesis Blockage Carotene Carotenoids Cell Membrane - enzymology Chloroplasts Chromatography Crosslinking Crystallography, X-Ray Desaturase Desaturation Dimers Electron microscopy Flavin-adenine dinucleotide Flavoproteins Homogeneity Homology Liquid chromatography Mass Spectrometry Mass spectroscopy Microscopy, Electron, Scanning Mutation Native Polyacrylamide Gel Electrophoresis Norflurazon Oligomers Oryza - enzymology Oxidoreductase Oxidoreductases - chemistry Oxidoreductases - isolation & purification Oxidoreductases - metabolism Oxygen Pharmacy Plastids Protein Binding Protein Conformation Protein folding Proteins Proteomics Quinone Quinones Structural analysis |
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Title | Phytoene Desaturase from Oryza sativa: Oligomeric Assembly, Membrane Association and Preliminary 3D-Analysis |
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