Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea
Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the surface 300 m at the Bermuda Atlantic Time-series Study (BATS) site from 2003 to 2005. SAR11 are dominant heterotrophs in oligotrophic systems; thus, r...
Saved in:
Published in | The ISME Journal Vol. 3; no. 3; pp. 283 - 295 |
---|---|
Main Authors | , , , , , |
Format | Journal Article |
Language | English |
Published |
London
Nature Publishing Group UK
01.03.2009
Nature Publishing Group |
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence
in situ
hybridization (FISH) over eight depths in the surface 300 m at the Bermuda Atlantic Time-series Study (BATS) site from 2003 to 2005. SAR11 are dominant heterotrophs in oligotrophic systems; thus, resolving their temporal dynamics can provide important insights to the cycling of organic and inorganic nutrients. This quantitative time-series data revealed distinct annual distribution patterns of SAR11 abundance in the euphotic (0–120) and upper mesopelagic (160–300 m) zones that were reproducibly correlated with seasonal mixing and stratification of the water column. Terminal restriction fragment length polymorphism (T-RFLP) data generated from a decade of samples collected at BATS were combined with the FISH data to model the annual dynamics of SAR11 subclade populations. 16S rRNA gene clone libraries were constructed to verify the correlation of the T-RFLP data with SAR11 clade structure. Clear vertical and temporal transitions were observed in the dominance of three SAR11 ecotypes. The mechanisms that lead to shifts between the different SAR11 populations are not well understood, but are probably a consequence of finely tuned physiological adaptations that partition the populations along physical and chemical gradients in the ecosystem. The correlation between evolutionary descent and temporal/spatial patterns we describe, confirmed that a minimum of three SAR11 ecotypes occupy the Sargasso Sea surface layer, and revealed new details of their population dynamics. |
---|---|
AbstractList | Abstract
Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the surface 300 m at the Bermuda Atlantic Time-series Study (BATS) site from 2003 to 2005. SAR11 are dominant heterotrophs in oligotrophic systems; thus, resolving their temporal dynamics can provide important insights to the cycling of organic and inorganic nutrients. This quantitative time-series data revealed distinct annual distribution patterns of SAR11 abundance in the euphotic (0–120) and upper mesopelagic (160–300 m) zones that were reproducibly correlated with seasonal mixing and stratification of the water column. Terminal restriction fragment length polymorphism (T-RFLP) data generated from a decade of samples collected at BATS were combined with the FISH data to model the annual dynamics of SAR11 subclade populations. 16S rRNA gene clone libraries were constructed to verify the correlation of the T-RFLP data with SAR11 clade structure. Clear vertical and temporal transitions were observed in the dominance of three SAR11 ecotypes. The mechanisms that lead to shifts between the different SAR11 populations are not well understood, but are probably a consequence of finely tuned physiological adaptations that partition the populations along physical and chemical gradients in the ecosystem. The correlation between evolutionary descent and temporal/spatial patterns we describe, confirmed that a minimum of three SAR11 ecotypes occupy the Sargasso Sea surface layer, and revealed new details of their population dynamics. Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the surface 300 m at the Bermuda Atlantic Time-series Study (BATS) site from 2003 to 2005. SAR11 are dominant heterotrophs in oligotrophic systems; thus, resolving their temporal dynamics can provide important insights to the cycling of organic and inorganic nutrients. This quantitative time-series data revealed distinct annual distribution patterns of SAR11 abundance in the euphotic (0-120) and upper mesopelagic (160-300 m) zones that were reproducibly correlated with seasonal mixing and stratification of the water column. Terminal restriction fragment length polymorphism (T-RFLP) data generated from a decade of samples collected at BATS were combined with the FISH data to model the annual dynamics of SAR11 subclade populations. 16S rRNA gene clone libraries were constructed to verify the correlation of the T-RFLP data with SAR11 clade structure. Clear vertical and temporal transitions were observed in the dominance of three SAR11 ecotypes. The mechanisms that lead to shifts between the different SAR11 populations are not well understood, but are probably a consequence of finely tuned physiological adaptations that partition the populations along physical and chemical gradients in the ecosystem. The correlation between evolutionary descent and temporal/spatial patterns we describe, confirmed that a minimum of three SAR11 ecotypes occupy the Sargasso Sea surface layer, and revealed new details of their population dynamics. Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the surface 300 m at the Bermuda Atlantic Time-series Study (BATS) site from 2003 to 2005. SAR11 are dominant heterotrophs in oligotrophic systems; thus, resolving their temporal dynamics can provide important insights to the cycling of organic and inorganic nutrients. This quantitative time-series data revealed distinct annual distribution patterns of SAR11 abundance in the euphotic (0–120) and upper mesopelagic (160–300 m) zones that were reproducibly correlated with seasonal mixing and stratification of the water column. Terminal restriction fragment length polymorphism (T-RFLP) data generated from a decade of samples collected at BATS were combined with the FISH data to model the annual dynamics of SAR11 subclade populations. 16S rRNA gene clone libraries were constructed to verify the correlation of the T-RFLP data with SAR11 clade structure. Clear vertical and temporal transitions were observed in the dominance of three SAR11 ecotypes. The mechanisms that lead to shifts between the different SAR11 populations are not well understood, but are probably a consequence of finely tuned physiological adaptations that partition the populations along physical and chemical gradients in the ecosystem. The correlation between evolutionary descent and temporal/spatial patterns we describe, confirmed that a minimum of three SAR11 ecotypes occupy the Sargasso Sea surface layer, and revealed new details of their population dynamics. |
Author | Carlson, Craig A Morris, Robert Treusch, Alexander H Vergin, Kevin Parsons, Rachel Giovannoni, Stephen J |
Author_xml | – sequence: 1 givenname: Craig A surname: Carlson fullname: Carlson, Craig A email: carlson@lifesci.ucsb.edu organization: Department of Ecology, Evolution, and Marine Biology, University of California – sequence: 2 givenname: Robert surname: Morris fullname: Morris, Robert organization: Department of Ecology, Evolution, and Marine Biology, University of California, Department of Oceanography, University of Washington – sequence: 3 givenname: Rachel surname: Parsons fullname: Parsons, Rachel organization: Bermuda Institute of Ocean Sciences, Ferry Reach – sequence: 4 givenname: Alexander H surname: Treusch fullname: Treusch, Alexander H organization: Department of Microbiology, Oregon State University – sequence: 5 givenname: Stephen J surname: Giovannoni fullname: Giovannoni, Stephen J organization: Department of Microbiology, Oregon State University – sequence: 6 givenname: Kevin surname: Vergin fullname: Vergin, Kevin organization: Department of Microbiology, Oregon State University |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/19052630$$D View this record in MEDLINE/PubMed |
BookMark | eNqFkcuL1EAQxhtZcR969SiNgreZ7UfSj-OyuCosCI6eQ6dTmcmQdMeuBFn_-u3MDKsI4qmrqd_3VVHfJTkLMQAhrzlbcybNdYcD7NeCMbPmXD8jF1yXfKWlZmdPtRLn5BJxz1ipldIvyDm3rBRKsgsybMBhDK6nzUNwQ-eRxpZubr5yTsc4zr2buhiQdoFOO6Awj7s4dZ660NABMI7Qu23-_8prHaQLFWKadj8BJ0iBblzaOsRI86SX5HnreoRXp_eKfL_78O320-r-y8fPtzf3K1-KclqpolTMgfUFNLaWytXGAROs5sKYuhZWgZLaW1YYr1plnNeyEL61RQMA-S5X5P3Rd0zxx5wXqYYOPfS9CxBnrJSy0hal_i8omNRlwWUG3_0F7uOc8t2w4kxYY3QhRabWR8qniJigrcbUDS49ZKha8qoOeVVLXlXOKwvenGzneoDmN34KKAPXRwBzK2wh_Tn3H5Zvj4rgpjnBk-UBW6gFegRBQa8L |
CitedBy_id | crossref_primary_10_5194_bg_12_6389_2015 crossref_primary_10_1029_2021JC017585 crossref_primary_10_1016_j_syapm_2021_126185 crossref_primary_10_1038_s41396_022_01332_6 crossref_primary_10_1111_j_1462_2920_2009_02092_x crossref_primary_10_1371_journal_pone_0052220 crossref_primary_10_3354_ame01661 crossref_primary_10_3389_fmicb_2021_669883 crossref_primary_10_3389_fmars_2023_1135113 crossref_primary_10_3389_fmicb_2015_01524 crossref_primary_10_1016_j_biortech_2014_03_033 crossref_primary_10_1038_s41564_017_0030_5 crossref_primary_10_1093_plankt_fbw066 crossref_primary_10_1093_molbev_msad251 crossref_primary_10_1038_ismej_2013_32 crossref_primary_10_1111_1462_2920_14896 crossref_primary_10_1186_s40168_024_01778_0 crossref_primary_10_1371_journal_pone_0050274 crossref_primary_10_1111_j_1462_2920_2009_01954_x crossref_primary_10_3354_ame01753 crossref_primary_10_1029_2021GB007194 crossref_primary_10_1016_j_margen_2014_03_002 crossref_primary_10_3354_ame01637 crossref_primary_10_3354_meps14233 crossref_primary_10_1128_msystems_01318_23 crossref_primary_10_1016_j_jmarsys_2013_07_016 crossref_primary_10_1128_AEM_02802_14 crossref_primary_10_1016_j_jmarsys_2018_04_002 crossref_primary_10_1111_j_1462_2920_2012_02738_x crossref_primary_10_1111_1462_2920_12445 crossref_primary_10_1029_2019GL085872 crossref_primary_10_1038_ismej_2011_80 crossref_primary_10_1038_s41467_024_48300_6 crossref_primary_10_1371_journal_pone_0135731 crossref_primary_10_3354_ame01522 crossref_primary_10_3354_ame01643 crossref_primary_10_3354_ame01768 crossref_primary_10_1111_1758_2229_13117 crossref_primary_10_1016_j_syapm_2019_03_007 crossref_primary_10_1038_ismej_2013_19 crossref_primary_10_1093_gbe_evx249 crossref_primary_10_3389_fmicb_2016_00679 crossref_primary_10_1002_lno_11405 crossref_primary_10_1038_s41396_019_0365_4 crossref_primary_10_1016_j_dsr_2016_04_009 crossref_primary_10_1128_mSystems_00954_20 crossref_primary_10_1093_pnasnexus_pgad287 crossref_primary_10_1038_s41396_019_0499_4 crossref_primary_10_1016_j_ecss_2020_106791 crossref_primary_10_1038_nature19068 crossref_primary_10_1038_ncomms5346 crossref_primary_10_1038_s43247_024_01395_7 crossref_primary_10_1128_msystems_00179_23 crossref_primary_10_3389_fmicb_2022_867694 crossref_primary_10_1038_ismej_2011_8 crossref_primary_10_1016_j_dsr2_2010_02_018 crossref_primary_10_1007_s00227_023_04247_8 crossref_primary_10_1016_j_syapm_2016_06_006 crossref_primary_10_3389_fmicb_2016_01932 crossref_primary_10_3897_mbmg_6_78181 crossref_primary_10_1038_ismej_2012_31 crossref_primary_10_1038_ismej_2014_153 crossref_primary_10_1038_s43705_022_00198_1 crossref_primary_10_1111_1462_2920_12035 crossref_primary_10_1111_1574_6941_12151 crossref_primary_10_1371_journal_pone_0174159 crossref_primary_10_3389_fmicb_2023_1287477 crossref_primary_10_1038_s41598_022_20954_6 crossref_primary_10_1038_ismej_2010_87 crossref_primary_10_1111_1462_2920_12278 crossref_primary_10_7717_peerj_1511 crossref_primary_10_1111_1462_2920_12241 crossref_primary_10_1111_j_1365_294X_2011_05378_x crossref_primary_10_1038_s41598_021_84969_1 crossref_primary_10_1128_AEM_00294_11 crossref_primary_10_1093_femsec_fiv064 crossref_primary_10_3389_fmicb_2022_833252 crossref_primary_10_1128_AEM_01530_17 crossref_primary_10_1111_1462_2920_12801 crossref_primary_10_1016_j_csr_2017_01_018 crossref_primary_10_1146_annurev_marine_120710_100757 crossref_primary_10_7554_eLife_46497 crossref_primary_10_1038_ismej_2013_122 crossref_primary_10_1038_ismej_2013_243 crossref_primary_10_1098_rspb_2015_0371 crossref_primary_10_1128_mBio_00252_12 crossref_primary_10_3389_fmicb_2020_593540 crossref_primary_10_3389_fmicb_2020_01749 crossref_primary_10_1038_ismej_2010_188 crossref_primary_10_1029_2011JC007141 crossref_primary_10_1016_j_hal_2011_04_016 crossref_primary_10_1038_ismej_2010_60 crossref_primary_10_1038_ismej_2015_76 crossref_primary_10_1128_msphere_00420_22 crossref_primary_10_1111_1462_2920_14313 crossref_primary_10_1016_j_dsr2_2010_11_021 crossref_primary_10_3390_phycology2030017 crossref_primary_10_1371_journal_pone_0023973 crossref_primary_10_1002_lno_10259 crossref_primary_10_1093_femsec_fiw133 crossref_primary_10_1525_elementa_2021_00078 crossref_primary_10_3390_md18110558 crossref_primary_10_3389_fmicb_2019_02273 crossref_primary_10_1126_science_1198078 crossref_primary_10_1038_ismej_2011_24 crossref_primary_10_1016_j_marchem_2015_06_024 crossref_primary_10_3389_fmicb_2020_580397 crossref_primary_10_1038_ismej_2009_60 crossref_primary_10_1002_lno_11910 crossref_primary_10_1111_mec_15068 crossref_primary_10_1111_j_1462_2920_2012_02700_x crossref_primary_10_1007_s12601_015_0057_6 crossref_primary_10_1111_j_1462_2920_2011_02598_x crossref_primary_10_1371_journal_pone_0153678 crossref_primary_10_1038_ismej_2010_204 crossref_primary_10_1016_j_gca_2010_08_026 crossref_primary_10_3389_fmars_2019_00743 crossref_primary_10_1111_j_1462_2920_2011_02694_x crossref_primary_10_1146_annurev_marine_010814_015934 crossref_primary_10_1016_j_orggeochem_2017_09_005 crossref_primary_10_1016_j_dsr_2023_104022 crossref_primary_10_1038_ismej_2015_260 crossref_primary_10_1111_1574_6941_12225 crossref_primary_10_1111_1574_6941_12348 crossref_primary_10_1007_s12275_013_2671_2 crossref_primary_10_3354_meps12643 crossref_primary_10_3389_fmars_2021_624164 crossref_primary_10_1111_j_1574_6941_2011_01189_x crossref_primary_10_1038_s41598_019_52648_x crossref_primary_10_3389_fmars_2020_590273 crossref_primary_10_1111_1462_2920_12720 crossref_primary_10_1186_s40168_021_01119_5 crossref_primary_10_1111_1758_2229_12783 crossref_primary_10_1038_s41598_017_06928_z crossref_primary_10_1016_j_dsr_2008_12_013 crossref_primary_10_1111_1462_2920_13023 crossref_primary_10_1038_ismej_2014_129 crossref_primary_10_3389_fmicb_2021_614634 crossref_primary_10_1073_pnas_0908881106 crossref_primary_10_1016_j_gene_2018_04_074 crossref_primary_10_1038_s41564_020_00851_2 crossref_primary_10_3389_fmars_2020_573268 crossref_primary_10_1073_pnas_0907041107 crossref_primary_10_1038_s41396_019_0516_7 crossref_primary_10_1038_ismej_2014_67 crossref_primary_10_1038_ismej_2013_96 crossref_primary_10_1038_ismej_2014_60 crossref_primary_10_1038_459013f crossref_primary_10_1038_ismej_2014_61 crossref_primary_10_1016_j_csr_2018_05_003 crossref_primary_10_1038_ismej_2011_101 crossref_primary_10_1371_journal_pone_0150361 crossref_primary_10_1016_j_tim_2016_12_013 crossref_primary_10_1038_s41396_021_00985_z crossref_primary_10_1111_j_1462_2920_2010_02362_x crossref_primary_10_1128_AEM_02852_15 crossref_primary_10_3389_fmars_2022_901201 crossref_primary_10_1038_s41396_018_0092_2 crossref_primary_10_1038_ismej_2011_108 crossref_primary_10_1038_s41598_021_90863_7 crossref_primary_10_1128_AEM_05531_11 crossref_primary_10_1111_1462_2920_13513 crossref_primary_10_1111_1462_2920_13997 crossref_primary_10_1128_AEM_05640_11 crossref_primary_10_3354_ame01580 crossref_primary_10_3389_fmicb_2020_542372 crossref_primary_10_1093_molbev_msp239 crossref_primary_10_1371_journal_pone_0217431 crossref_primary_10_3389_fmicb_2021_583982 crossref_primary_10_1007_s00248_018_1179_z crossref_primary_10_1111_j_1758_2229_2012_00362_x crossref_primary_10_1146_annurev_marine_120308_081003 crossref_primary_10_1093_ismeco_ycae014 crossref_primary_10_4161_mge_20031 crossref_primary_10_7717_peerj_12274 crossref_primary_10_1038_ismej_2009_142 crossref_primary_10_1002_lno_11944 crossref_primary_10_1038_ismej_2011_117 crossref_primary_10_1038_ismej_2013_79 crossref_primary_10_1016_j_pocean_2018_08_005 crossref_primary_10_1093_femsec_fix083 crossref_primary_10_1029_2011GB004069 crossref_primary_10_1029_2012GB004449 crossref_primary_10_3389_fmars_2020_00173 crossref_primary_10_1371_journal_pone_0086887 crossref_primary_10_3389_fmicb_2016_00234 crossref_primary_10_1128_AEM_00099_14 crossref_primary_10_1038_ismej_2015_221 crossref_primary_10_1021_acs_est_6b03108 crossref_primary_10_1038_msb_2012_28 crossref_primary_10_1002_2016JG003390 crossref_primary_10_5194_bg_12_209_2015 crossref_primary_10_1016_j_scitotenv_2021_148097 crossref_primary_10_1098_rsbl_2011_0990 crossref_primary_10_1093_femsec_fiab167 crossref_primary_10_1038_ismej_2011_135 crossref_primary_10_1038_s41598_022_06120_y crossref_primary_10_1002_ece3_4064 crossref_primary_10_1371_journal_pone_0298139 crossref_primary_10_1371_journal_pone_0101415 crossref_primary_10_1073_pnas_1009480107 crossref_primary_10_1111_j_1462_2920_2009_01929_x crossref_primary_10_1111_j_1462_2920_2010_02400_x crossref_primary_10_3354_ame01571 crossref_primary_10_1128_AEM_03410_14 |
Cites_doi | 10.1111/j.1574-6941.2006.00276.x 10.1128/AEM.66.4.1692-1697.2000 10.4319/lo.2006.51.3.1262 10.1038/nature06776 10.1016/B978-012323841-2/50006-3 10.1038/30965 10.1111/j.1462-2920.2007.01318.x 10.1016/S0967-0645(00)00166-1 10.1038/371405a0 10.1016/0967-0645(95)00101-8 10.4319/lo.2004.49.4.1073 10.3354/ame045107 10.1073/pnas.93.15.7979 10.1016/S0967-0645(00)00148-X 10.1073/pnas.0712205105 10.1126/science.1114057 10.3354/ame024117 10.1186/1745-6150-2-27 10.1038/nature01240 10.1038/345060a0 10.4319/lom.2004.2.303 10.1098/rstb.2006.1918 10.1046/j.1462-2920.2000.00081.x 10.1128/AEM.71.3.1671-1673.2005 10.1126/science.1138544 10.1126/science.1157890 10.3354/ame018293 10.1093/nar/gkh293 10.4319/lo.2008.53.2.0835 10.1038/nature00917 10.4319/lo.2005.50.5.1687 10.1146/annurev.micro.57.030502.090759 10.1038/nature04032 10.1126/science.1120250 10.1128/AEM.69.5.2555-2562.2003 10.4319/lo.1980.25.5.0943 10.1128/AEM.70.7.4129-4135.2004 10.1126/science.1093857 10.1016/S0967-0645(00)00153-3 10.1016/j.dsr2.2006.01.025 10.1073/pnas.0602399103 10.1038/426032a 10.1029/92JC00407 10.1128/aem.63.3.983-989.1997 10.1128/aem.62.4.1171-1177.1996 10.1128/aem.63.11.4516-4522.1997 10.1128/aem.63.4.1441-1448.1997 10.1128/aem.63.1.63-70.1997 |
ContentType | Journal Article |
Copyright | International Society for Microbial Ecology 2009 Copyright Nature Publishing Group Mar 2009 |
Copyright_xml | – notice: International Society for Microbial Ecology 2009 – notice: Copyright Nature Publishing Group Mar 2009 |
DBID | CGR CUY CVF ECM EIF NPM AAYXX CITATION 3V. 7QL 7SN 7ST 7T7 7TM 7X7 7XB 88E 8FD 8FE 8FH 8FI 8FJ 8FK ABUWG AFKRA ATCPS AZQEC BBNVY BENPR BHPHI C1K CCPQU DWQXO FR3 FYUFA GHDGH GNUQQ HCIFZ K9. LK8 M0S M1P M7N M7P P64 PATMY PQEST PQQKQ PQUKI PYCSY SOI 7X8 |
DOI | 10.1038/ismej.2008.117 |
DatabaseName | Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef ProQuest Central (Corporate) Bacteriology Abstracts (Microbiology B) Ecology Abstracts Environment Abstracts Industrial and Applied Microbiology Abstracts (Microbiology A) Nucleic Acids Abstracts ProQuest Health & Medical Collection ProQuest Central (purchase pre-March 2016) Medical Database (Alumni Edition) Technology Research Database ProQuest SciTech Collection ProQuest Natural Science Collection Hospital Premium Collection Hospital Premium Collection (Alumni Edition) ProQuest Central (Alumni) (purchase pre-March 2016) ProQuest Central (Alumni) ProQuest Central Agricultural & Environmental Science Collection ProQuest Central Essentials Biological Science Collection ProQuest Databases ProQuest Natural Science Collection Environmental Sciences and Pollution Management ProQuest One Community College ProQuest Central Engineering Research Database Health Research Premium Collection Health Research Premium Collection (Alumni) ProQuest Central Student SciTech Premium Collection ProQuest Health & Medical Complete (Alumni) ProQuest Biological Science Collection Health & Medical Collection (Alumni Edition) Medical Database Algology Mycology and Protozoology Abstracts (Microbiology C) ProQuest Biological Science Journals Biotechnology and BioEngineering Abstracts Environmental Science Database ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Academic ProQuest One Academic UKI Edition Environmental Science Collection Environment Abstracts MEDLINE - Academic |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef ProQuest Central Student Technology Research Database ProQuest Central Essentials Nucleic Acids Abstracts ProQuest Health & Medical Complete (Alumni) ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest Natural Science Collection Environmental Sciences and Pollution Management ProQuest Central Health Research Premium Collection Health and Medicine Complete (Alumni Edition) Natural Science Collection ProQuest Central Korea Bacteriology Abstracts (Microbiology B) Algology Mycology and Protozoology Abstracts (Microbiology C) Agricultural & Environmental Science Collection Biological Science Collection Industrial and Applied Microbiology Abstracts (Microbiology A) ProQuest Medical Library (Alumni) ProQuest Biological Science Collection ProQuest One Academic Eastern Edition ProQuest Hospital Collection Health Research Premium Collection (Alumni) Biological Science Database ProQuest SciTech Collection Ecology Abstracts ProQuest Hospital Collection (Alumni) Biotechnology and BioEngineering Abstracts Environmental Science Collection ProQuest Health & Medical Complete ProQuest Medical Library ProQuest One Academic UKI Edition Environmental Science Database Engineering Research Database ProQuest One Academic Environment Abstracts ProQuest Central (Alumni) MEDLINE - Academic |
DatabaseTitleList | CrossRef MEDLINE ProQuest Central Student Bacteriology Abstracts (Microbiology B) MEDLINE - Academic |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database – sequence: 3 dbid: BENPR name: ProQuest Databases url: https://www.proquest.com/central sourceTypes: Aggregation Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology Ecology |
EISSN | 1751-7370 |
EndPage | 295 |
ExternalDocumentID | 2721425971 10_1038_ismej_2008_117 19052630 ismej2008117 |
Genre | Research Support, U.S. Gov't, Non-P.H.S Research Support, Non-U.S. Gov't Journal Article |
GeographicLocations | Bermuda |
GeographicLocations_xml | – name: Bermuda |
GroupedDBID | - -Q- 02 0R 123 29J 39C 3V. 4.4 53G 70F 7X7 7XC 88E 8FE 8FH 8FI 8FJ AADWK AAWBL AAYJO AAZLF ABAWZ ABDBF ABDEU ABGIJ ABPTK ABUWG ACGFS ACKTT ACPRK ADACO ADBBV ADHDB ADQMX AEDAW AEJRE AENEX AEXYK AFKRA AFRAH AFSHS AGEZK AHMBA AHSBF AJRNO ALFFA ALMA_UNASSIGNED_HOLDINGS ASPBG ATCPS AVWKF AXYYD AZFZN BBAFP BBNVY BENPR BHPHI BKKNO BPHCQ BVXVI CS3 DU5 EBLON EBS EDH EE. EIOEI EJD ESX F5P FDQFY FEDTE FERAY FIZPM FSGXE FYUFA HCIFZ HVGLF HYE HZ I-F JSO KQ8 LK8 M1P M7P NAO O9- OK1 PATMY PQEST PQQKQ PQUKI PRINS PROAC PSQYO PYCSY Q- RIG RNT RNTTT RPM SNX SNYQT SV3 SWTZT TAOOD TBHMF TDRGL TR2 TSG TUS --- 0R~ 406 AAHBH AANZL AAPXW ABAKF ABJNI ABLJU ABXVV ACRQY ACZOJ AEFQL AEVLU AGAYW AGHAI AGQEE AILAN AMYLF AOIJS CCPQU DNIVK DPUIP EMOBN HMCUK HZ~ IWAJR MM. NQJWS ROX SOHCF SRMVM TOX UKHRP ~02 ~8M CGR CUY CVF ECM EIF NPM AAYXX CITATION 7QL 7SN 7ST 7T7 7TM 7XB 8FD 8FK AZQEC C1K DWQXO FR3 GNUQQ K9. M7N P64 SOI AATNV 7X8 |
ID | FETCH-LOGICAL-c525t-64560ae9c4ed9b36ab8ae020b1288bb296e637c9048c6f68ac7342cf94deee103 |
IEDL.DBID | 7X7 |
ISSN | 1751-7362 |
IngestDate | Fri Aug 16 01:10:12 EDT 2024 Sat Aug 17 02:24:42 EDT 2024 Thu Oct 10 21:11:13 EDT 2024 Thu Sep 12 18:03:23 EDT 2024 Sat Sep 28 07:55:14 EDT 2024 Fri Oct 11 20:55:56 EDT 2024 Thu Oct 07 19:35:50 EDT 2021 |
IsDoiOpenAccess | true |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 3 |
Keywords | BATS FISH SAR11 ecotype bacterioplankton T-RFLP |
Language | English |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c525t-64560ae9c4ed9b36ab8ae020b1288bb296e637c9048c6f68ac7342cf94deee103 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
OpenAccessLink | http://dx.doi.org/10.1038/ismej.2008.117 |
PMID | 19052630 |
PQID | 1029887432 |
PQPubID | 536304 |
PageCount | 13 |
ParticipantIDs | proquest_miscellaneous_66939457 proquest_miscellaneous_20375413 proquest_journals_1029887432 crossref_primary_10_1038_ismej_2008_117 pubmed_primary_19052630 springer_journals_10_1038_ismej_2008_117 nature_primary_ismej2008117 |
ProviderPackageCode | ABDEU AEDAW AAZLF -Q- AADWK AAYJO 70F ADQMX EE. RNTTT SWTZT ABGIJ RNT NAO |
PublicationCentury | 2000 |
PublicationDate | 2009-03-01 |
PublicationDateYYYYMMDD | 2009-03-01 |
PublicationDate_xml | – month: 03 year: 2009 text: 2009-03-01 day: 01 |
PublicationDecade | 2000 |
PublicationPlace | London |
PublicationPlace_xml | – name: London – name: England |
PublicationSubtitle | Multidisciplinary Journal of Microbial Ecology |
PublicationTitle | The ISME Journal |
PublicationTitleAbbrev | ISME J |
PublicationTitleAlternate | ISME J |
PublicationYear | 2009 |
Publisher | Nature Publishing Group UK Nature Publishing Group |
Publisher_xml | – name: Nature Publishing Group UK – name: Nature Publishing Group |
References | Ducklow, H 2000 Giovannoni, SJ, Bibbs, L, Cho, JC, Stapels, MD, Desiderio, R, Vergin, KL 2005b; 438 DeLong, EF, Preston, CM, Mincer, T, Rich, V, Hallam, SJ, Frigaard, NU 2006; 311 Egert, M, Friedrich, MW 2003; 69 Tripp, HJ, Schwalbach, MS, Meyer, MM, Kitner, JB, Breaker, RR, Giovannoni, SJ 2008b Wright, TD, Vergin, K, Boyd, P, Giovannoni, SJ 1997; 63 Cohan, FM 2006; 361 Cottrell, MT, Kirchman, DL 2000; 66 Reinthaler, T, van Aken, H, Veth, C, Aristegui, J, Robinson, C, Williams, P 2006; 51 Hunt, DE, David, LA, Gevers, D, Preheim, SP, Alm, EJ, Polzl, MF 2008; 320 Karl, DM, Laws, EA, Morris, P, Williams, PJl, Emerson, S 2003; 426 Ricke, P, Kolb, S, Braker, G 2005; 71 Giovannoni, SJ, Tripp, HJ, Givan, S, Podar, M, Vergin, KL, Baptista, D 2005a; 309 Carlson, CA, Ducklow, HW, Michaels, AF 1994; 371 Rappé, MS, Giovannoni, SJ 2003; 57 Liu, WT, Marsh, TL, Cheng, H, Forney, LJ 1997; 63 Goldberg, SJ, Carlson, CA, Hansell, DA, Nelson, NB, Siegel, DA 2008 Moore, L, Rocap, G, Chisholm, SW 1998; 393 Osborn, AM, Moore, ERB, Timmis, KN 2006; 2 Nagata, T 2000 Giovannoni, SJ, Britschgi, TB, Moyer, CL, Field, KG 1990; 345 Kitts, CL 2001; 2 Morris, RM, Connon, SA, Rappé, M, Vergin, KL, Siebold, WA, Carlson, CA 2002; 420 Hood, RR, Laws, EA, Armstrong, R, Bates, N, Brown, CW, Carlson, CA 2006; 53 Ludwig, W, Strunk, O, Westram, R, Richter, L, Meier, H, Yadhukumar, A 2004; 32 Malmstrom, RR, Kiene, RP, Cottrell, MT, Kirchman, DL 2004; 70 Suzuki, MT, Preston, CM, Chavez, FP, DeLong, EF 2001; 24 Morris, RM, Vergin, KL, Cho, JC, Rappe, MS, Carlson, CA, Giovannoni, SJ 2005; 50 Carlson, CA, Giovannoni, SJ, Hansell, DA, Goldberg, SJ, Parsons, RV, Vergin, K 2004; 49 Carlson, CA, Ducklow, HW, Sleeter, TD 1996; 43 Field, KG, Gordon, D, Wright, T, Rappé, M, Urbach, E, Vergin, K 1997; 63 Mary, I, Heywood, JL, Fuchs, BM, Amann, R, Tarran, GA, Burkill, PH 2006; 45 Zafiriou, OC, Xie, H, Nelson, NB, Najjar, RG, Wang, W 2008; 53 Steinberg, DK, Carlson, CA, Bates, NR, Johnson, RJ, Michaels, AF, Knap, AH 2001; 48 Swofford, DL 2002 Sowell, SM, Wilhelm, LJ, Norbeck, AD, Lipton, MS, Nicora, CD, Barofsky, DF 2008 Wilhelm, L, Tripp, HJ, Givan, S, Smith, D, Giovannoni, SJ 2007; 2 Mou, XZ, Hodson, RE, Moran, MA 2007; 9 Fuhrman, JA, Hewson, I, Schwalbach, MS, Steele, JA, Brown, MV, Naeem, S 2006; 103 Alonso-Saez, L, Balague, V, Sa, EL, Sanchez, O, Gonzalez, JM, Pinhassi, J 2007; 60 Venter, JC, Remington, K, Heidelberg, JF, Halpern, AL, Rusch, D, Eisen, JA 2004; 304 Rappé, MS, Connon, SA, Vergin, KL, Giovannoni, SJ 2002; 418 Keil, RG, Kirchman, DL 1999; 18 Follows, MJ, Dutiewicz, S, Grant, S, Chisholm, SW 2007; 30 Tripp, HJ, Kitner, JB, Schwalbach, MS, Dacey, JWH, Wilhelm, LJ, Giovanonni, SJ 2008a; 452 Gordon, D, Giovannoni, SJ 1996; 62 Giovannoni, SJ, Rappé, MS, Vergin, K, Adair, N 1996; 93 Porter, KG, Feig, YS 1980; 25 DuRand, MD, Olson, RJ, Chisholm, SW 2001; 48 Suzuki, MT, Rappé, MS, Giovannoni, SJ 1998; 63 Castle, D, Kirchman, DL 2004; 2 Koeppel, A, Perry, EB, Sikorski, J, Krizanc, D, Warner, A, Ward, DM 2008; 105 Hansell, DA, Carlson, CA 2001; 48 Carlson, CA 2002 Sprintall, J, Tomczak, M 1992; 97 Reinthaler, van Aken, Veth, Aristegui, Robinson, Williams (CR42) 2006; 51 Hunt, David, Gevers, Preheim, Alm, Polzl (CR24) 2008; 320 Liu, Marsh, Cheng, Forney (CR29) 1997; 63 Giovannoni, Rappé, Vergin, Adair (CR17) 1996; 93 Hansell, Carlson (CR22) 2001; 48 Suzuki, Rappé, Giovannoni (CR48) 1998; 63 Castle, Kirchman (CR2) 2004; 2 Wilhelm, Tripp, Givan, Smith, Giovannoni (CR53) 2007; 2 Swofford (CR49) 2002 Koeppel, Perry, Sikorski, Krizanc, Warner, Ward (CR26) 2008; 105 Wright, Vergin, Boyd, Giovannoni (CR54) 1997; 63 Ricke, Kolb, Braker (CR43) 2005; 71 Hood, Laws, Armstrong, Bates, Brown, Carlson (CR23) 2006; 53 Malmstrom, Kiene, Cottrell, Kirchman (CR31) 2004; 70 Giovannoni, Bibbs, Cho, Stapels, Desiderio, Vergin (CR19) 2005; 438 CR44 Carlson, Giovannoni, Hansell, Goldberg, Parsons, Vergin (CR6) 2004; 49 Field, Gordon, Wright, Rappé, Urbach, Vergin (CR13) 1997; 63 Giovannoni, Britschgi, Moyer, Field (CR16) 1990; 345 Ludwig, Strunk, Westram, Richter, Meier, Yadhukumar (CR30) 2004; 32 Moore, Rocap, Chisholm (CR33) 1998; 393 Suzuki, Preston, Chavez, DeLong (CR47) 2001; 24 Carlson, Ducklow, Sleeter (CR4) 1996; 43 Carlson (CR3) 2002 Venter, Remington, Heidelberg, Halpern, Rusch, Eisen (CR52) 2004; 304 Mou, Hodson, Moran (CR36) 2007; 9 Keil, Kirchman (CR28) 1999; 18 Nagata (CR37) 2000 DuRand, Olson, Chisholm (CR11) 2001; 48 Cottrell, Kirchman (CR8) 2000; 66 Giovannoni, Tripp, Givan, Podar, Vergin, Baptista (CR18) 2005; 309 Osborn, Moore, Timmis (CR38) 2006; 2 Cohan (CR7) 2006; 361 DeLong, Preston, Mincer, Rich, Hallam, Frigaard (CR9) 2006; 311 CR51 Karl, Laws, Morris, Williams, Emerson (CR25) 2003; 426 Zafiriou, Xie, Nelson, Najjar, Wang (CR55) 2008; 53 Alonso-Saez, Balague, Sa, Sanchez, Gonzalez, Pinhassi (CR1) 2007; 60 Follows, Dutiewicz, Grant, Chisholm (CR14) 2007; 30 Sprintall, Tomczak (CR45) 1992; 97 Mary, Heywood, Fuchs, Amann, Tarran, Burkill (CR32) 2006; 45 Carlson, Ducklow, Michaels (CR5) 1994; 371 Steinberg, Carlson, Bates, Johnson, Michaels, Knap (CR46) 2001; 48 Ducklow (CR10) 2000 Gordon, Giovannoni (CR21) 1996; 62 Morris, Vergin, Cho, Rappe, Carlson, Giovannoni (CR35) 2005; 50 Rappé, Connon, Vergin, Giovannoni (CR40) 2002; 418 Tripp, Kitner, Schwalbach, Dacey, Wilhelm, Giovanonni (CR50) 2008; 452 Rappé, Giovannoni (CR41) 2003; 57 Morris, Connon, Rappé, Vergin, Siebold, Carlson (CR34) 2002; 420 CR20 Kitts (CR27) 2001; 2 Porter, Feig (CR39) 1980; 25 Egert, Friedrich (CR12) 2003; 69 Fuhrman, Hewson, Schwalbach, Steele, Brown, Naeem (CR15) 2006; 103 Hunt (2024020117222032400_CR24) 2008; 320 Porter (2024020117222032400_CR39) 1980; 25 2024020117222032400_CR51 Osborn (2024020117222032400_CR38) 2006; 2 Tripp (2024020117222032400_CR50) 2008; 452 Kitts (2024020117222032400_CR27) 2001; 2 Malmstrom (2024020117222032400_CR31) 2004; 70 Egert (2024020117222032400_CR12) 2003; 69 Giovannoni (2024020117222032400_CR17) 1996; 93 Zafiriou (2024020117222032400_CR55) 2008; 53 Ludwig (2024020117222032400_CR30) 2004; 32 Gordon (2024020117222032400_CR21) 1996; 62 2024020117222032400_CR44 Morris (2024020117222032400_CR35) 2005; 50 Ducklow (2024020117222032400_CR10) 2000 Rappé (2024020117222032400_CR41) 2003; 57 Wright (2024020117222032400_CR54) 1997; 63 DeLong (2024020117222032400_CR9) 2006; 311 DuRand (2024020117222032400_CR11) 2001; 48 Swofford (2024020117222032400_CR49) 2002 Rappé (2024020117222032400_CR40) 2002; 418 Giovannoni (2024020117222032400_CR19) 2005; 438 Hansell (2024020117222032400_CR22) 2001; 48 Ricke (2024020117222032400_CR43) 2005; 71 Koeppel (2024020117222032400_CR26) 2008; 105 Nagata (2024020117222032400_CR37) 2000 Alonso-Saez (2024020117222032400_CR1) 2007; 60 Fuhrman (2024020117222032400_CR15) 2006; 103 Venter (2024020117222032400_CR52) 2004; 304 Cottrell (2024020117222032400_CR8) 2000; 66 Mary (2024020117222032400_CR32) 2006; 45 Morris (2024020117222032400_CR34) 2002; 420 Reinthaler (2024020117222032400_CR42) 2006; 51 Steinberg (2024020117222032400_CR46) 2001; 48 Carlson (2024020117222032400_CR4) 1996; 43 Follows (2024020117222032400_CR14) 2007; 30 Mou (2024020117222032400_CR36) 2007; 9 Moore (2024020117222032400_CR33) 1998; 393 Suzuki (2024020117222032400_CR48) 1998; 63 Carlson (2024020117222032400_CR3) 2002 Giovannoni (2024020117222032400_CR16) 1990; 345 Giovannoni (2024020117222032400_CR18) 2005; 309 2024020117222032400_CR20 Field (2024020117222032400_CR13) 1997; 63 Carlson (2024020117222032400_CR6) 2004; 49 Cohan (2024020117222032400_CR7) 2006; 361 Castle (2024020117222032400_CR2) 2004; 2 Hood (2024020117222032400_CR23) 2006; 53 Sprintall (2024020117222032400_CR45) 1992; 97 Karl (2024020117222032400_CR25) 2003; 426 Keil (2024020117222032400_CR28) 1999; 18 Carlson (2024020117222032400_CR5) 1994; 371 Liu (2024020117222032400_CR29) 1997; 63 Wilhelm (2024020117222032400_CR53) 2007; 2 Suzuki (2024020117222032400_CR47) 2001; 24 |
References_xml | – volume: 32 start-page: 1363 year: 2004 end-page: 1371 article-title: ARB: a software environment for sequence data publication-title: Nucleic Acids Res contributor: fullname: Yadhukumar, A – volume: 25 start-page: 943 year: 1980 end-page: 948 article-title: The use of DAPI for identifying and counting aquatic microflora publication-title: Limnol Oceanogr contributor: fullname: Feig, YS – volume: 426 start-page: 32 year: 2003 article-title: Metabolic balance of the open sea publication-title: Nature contributor: fullname: Emerson, S – year: 2008 article-title: Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea publication-title: ISME J contributor: fullname: Barofsky, DF – year: 2008b article-title: Pelagibacter 'ubique' is a functional glycine-serine auxotroph with a glycine riboswitch preceding malate synthase publication-title: Environ Microbiol contributor: fullname: Giovannoni, SJ – volume: 45 start-page: 107 year: 2006 end-page: 113 article-title: SAR11 dominance among metabolically active low nucleic acid bacterioplankton in surface waters along an Atlantic meridional transect publication-title: Aquat Microbial Ecol contributor: fullname: Burkill, PH – volume: 69 start-page: 2555 year: 2003 end-page: 2562 article-title: Post-amplification Klenow fragment treatment alleviates PCR bias caused by partially single-stranded amplicons publication-title: Aquat Environ Microbiol contributor: fullname: Friedrich, MW – volume: 51 start-page: 1262 year: 2006 end-page: 1273 article-title: Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin publication-title: Limnol Oceanogr contributor: fullname: Williams, P – start-page: 85 year: 2000 end-page: 120 article-title: Bacterial production and biomass in the ocean publication-title: Microbial Ecology of the Oceans contributor: fullname: Ducklow, H – volume: 18 start-page: 293 year: 1999 end-page: 300 article-title: Utilization of dissolved protein and amino acids in the northern Sargasso Sea publication-title: Aquat Microbial Ecol contributor: fullname: Kirchman, DL – volume: 60 start-page: 98 year: 2007 end-page: 112 article-title: Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH publication-title: Fems Microbiol Ecol contributor: fullname: Pinhassi, J – year: 2008 article-title: Temporal dynamics of dissolved combined neutral sugars and the quality of dissolved organic matter in the northwestern Sargasso Sea publication-title: Deep Sea Res I contributor: fullname: Siegel, DA – volume: 71 start-page: 1671 year: 2005 end-page: 1673 article-title: Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novel pmoA cluster in a forest soil publication-title: Appl Environ Microbiol contributor: fullname: Braker, G – volume: 2 start-page: 303 year: 2004 end-page: 314 article-title: Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence hybridization publication-title: Limnol Oceanogr Methods contributor: fullname: Kirchman, DL – volume: 48 start-page: 1405 year: 2001 end-page: 1447 article-title: Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): A decade-scale look at ocean biology and biogeochemistry publication-title: Deep Sea Res II contributor: fullname: Knap, AH – volume: 63 start-page: 983 year: 1998 end-page: 989 article-title: Kinetic bias in estimate of costal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity publication-title: Appl Environ Microbiol contributor: fullname: Giovannoni, SJ – start-page: 121 year: 2000 end-page: 152 article-title: Production mechanisms of dissolved organic matter publication-title: Microbial Ecology of the Oceans contributor: fullname: Nagata, T – volume: 345 start-page: 60 year: 1990 end-page: 63 article-title: Genetic diversity in Sargasso Sea bacterioplankton publication-title: Nature contributor: fullname: Field, KG – year: 2002 publication-title: PAUP Phylogenetic Analysis Using Parsimony ( and other methods) contributor: fullname: Swofford, DL – volume: 63 start-page: 63 year: 1997 end-page: 70 article-title: Diversity and depth-specific distribution of SAR 11 cluster rRNA genes from marine planktonic bacteria publication-title: App Environ Microbiol contributor: fullname: Vergin, K – volume: 62 start-page: 1171 year: 1996 end-page: 1177 article-title: Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans publication-title: Appl Environ Microbio contributor: fullname: Giovannoni, SJ – volume: 452 start-page: 741 year: 2008a end-page: 744 article-title: SAR11 marine bacteria require exogenous reduced sulfur for growth publication-title: Nature contributor: fullname: Giovanonni, SJ – volume: 2 start-page: 39 year: 2006 end-page: 50 article-title: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics publication-title: Environ Microbiol contributor: fullname: Timmis, KN – volume: 320 start-page: 1081 year: 2008 end-page: 1085 article-title: Resource partitioning and sympatric differentiation among closely related bacterioplankton publication-title: Science contributor: fullname: Polzl, MF – volume: 43 start-page: 491 year: 1996 end-page: 515 article-title: Stocks and dynamics of bacterioplankton in the Northwestern Sargasso Sea publication-title: Deep Sea Res II contributor: fullname: Sleeter, TD – volume: 418 start-page: 630 year: 2002 end-page: 633 article-title: Cultivation of the ubiquitous SAR11 marine bacterioplankton clade publication-title: Nature contributor: fullname: Giovannoni, SJ – volume: 309 start-page: 1242 year: 2005a end-page: 1245 article-title: Genome streamlining in a cosmopolitan oceanic bacterium publication-title: Science contributor: fullname: Baptista, D – volume: 393 start-page: 464 year: 1998 end-page: 467 article-title: Physiology and molecular phylogeny of coexisting ecotypes publication-title: Natrue contributor: fullname: Chisholm, SW – volume: 66 start-page: 1692 year: 2000 end-page: 1697 article-title: Natural assemblages of marine proteobacteria and members of the Cytophaga-Flovobacter cluster consuming low and high molecular weight dissolved organic matter publication-title: Appl Environ Microbiol contributor: fullname: Kirchman, DL – volume: 105 start-page: 2504 year: 2008 end-page: 2509 article-title: Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics publication-title: Proc Natl Acad Sci USA contributor: fullname: Ward, DM – volume: 371 start-page: 405 year: 1994 end-page: 408 article-title: Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea publication-title: Nature contributor: fullname: Michaels, AF – volume: 420 start-page: 806 year: 2002 end-page: 809 article-title: High cellular ab unbundance of the SAR11 bacterioplankton clade in seawater publication-title: Nature contributor: fullname: Carlson, CA – volume: 2 start-page: 17 year: 2001 end-page: 25 article-title: Terminal Restriction Fragment Patterns-a tool for comparing microbial communities and assessing community dynamics publication-title: Curr Iss Int Microbiol contributor: fullname: Kitts, CL – volume: 361 start-page: 1985 year: 2006 end-page: 1996 article-title: Toward a conceptual and operational union of bacterial systematics, ecology, and evolution publication-title: Phil Trans R Soc B contributor: fullname: Cohan, FM – volume: 97 start-page: 7305 year: 1992 end-page: 7316 article-title: Evidence of the barrier layer in the surface layer of the tropics publication-title: J Geophys Res contributor: fullname: Tomczak, M – volume: 70 start-page: 4129 year: 2004 end-page: 4135 article-title: Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean publication-title: Appl Environ Microbiol contributor: fullname: Kirchman, DL – volume: 63 start-page: 1441 year: 1997 end-page: 1448 article-title: A novel delta-proteobacterial lineage from the lower ocean surface layer publication-title: Applied and Environmental Microbiology contributor: fullname: Giovannoni, SJ – volume: 49 start-page: 1073 year: 2004 end-page: 1083 article-title: Interactions between DOC, microbial processes, and community structure in the mesopelagic zone of the northwestern Sargasso Sea publication-title: Limnol and Oceanog contributor: fullname: Vergin, K – volume: 93 start-page: 7979 year: 1996 end-page: 7984 article-title: 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria phylum publication-title: Proc Natl Acad Sci USA contributor: fullname: Adair, N – volume: 438 start-page: 82 year: 2005b end-page: 85 article-title: Proteorhodopsin in the ubiquitous marine bacterium SAR11 publication-title: Nature contributor: fullname: Vergin, KL – volume: 53 start-page: 835 year: 2008 end-page: 850 article-title: Diel carbon monoxide cycling in the upper Sargasso Sea near Bermuda at the onset of spring and in midsummer publication-title: Limnol Oceanog contributor: fullname: Wang, W – volume: 50 start-page: 1687 year: 2005 end-page: 1696 article-title: Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site publication-title: Limnol Oceanogr contributor: fullname: Giovannoni, SJ – volume: 63 start-page: 4516 year: 1997 end-page: 4522 article-title: Characterization of microbial diversity by determining terminal restriction fragment length polymorphism of genes encoding 16s rRNA publication-title: Appl Environ Microbiol contributor: fullname: Forney, LJ – volume: 30 start-page: 1843 year: 2007 end-page: 1846 article-title: Emergent biogeography of microbial communities in a model ocean publication-title: Science contributor: fullname: Chisholm, SW – volume: 53 start-page: 459 year: 2006 end-page: 512 article-title: Functional group modeling: Progress, challenges and prospects publication-title: Deep Sea Research II contributor: fullname: Carlson, CA – volume: 2 start-page: 27 year: 2007 article-title: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data publication-title: Biology Direct contributor: fullname: Giovannoni, SJ – volume: 9 start-page: 2025 year: 2007 end-page: 2037 article-title: Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater publication-title: Environ Microbiol contributor: fullname: Moran, MA – start-page: 91 year: 2002 end-page: 151 article-title: Production and Removal Processes publication-title: Biogeochemistry of Marine Dissolved Organic Matter contributor: fullname: Carlson, CA – volume: 48 start-page: 1649 year: 2001 end-page: 1667 article-title: Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: Control by Convective Overturn publication-title: Deep Sea Res II contributor: fullname: Carlson, CA – volume: 103 start-page: 13104 year: 2006 end-page: 13109 article-title: Annually reoccurring bacterial communities are predictable from ocean conditions publication-title: Proc Natl Acad Sci USA contributor: fullname: Naeem, S – volume: 24 start-page: 117 year: 2001 end-page: 127 article-title: Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay publication-title: Aquat Microbial Ecol contributor: fullname: DeLong, EF – volume: 311 start-page: 496 year: 2006 end-page: 503 article-title: Community genomics among stratified microbial assemblages in the ocean's interior publication-title: Science contributor: fullname: Frigaard, NU – volume: 57 start-page: 369 year: 2003 end-page: 394 article-title: The uncultured microbial majority publication-title: Annu Rev Microbiol contributor: fullname: Giovannoni, SJ – volume: 304 start-page: 66 year: 2004 end-page: 72 article-title: Environmental genome shotgun sequencing of the Sargasso Sea publication-title: Science contributor: fullname: Eisen, JA – volume: 48 start-page: 1983 year: 2001 end-page: 2004 article-title: Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea publication-title: Deep Sea Res II contributor: fullname: Chisholm, SW – volume: 60 start-page: 98 year: 2007 end-page: 112 ident: CR1 article-title: Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH publication-title: Fems Microbiol Ecol doi: 10.1111/j.1574-6941.2006.00276.x contributor: fullname: Pinhassi – volume: 63 start-page: 63 year: 1997 end-page: 70 ident: CR13 article-title: Diversity and depth-specific distribution of SAR 11 cluster rRNA genes from marine planktonic bacteria publication-title: App Environ Microbiol contributor: fullname: Vergin – year: 2002 ident: CR49 publication-title: PAUP Phylogenetic Analysis Using Parsimony ( and other methods) contributor: fullname: Swofford – volume: 66 start-page: 1692 year: 2000 end-page: 1697 ident: CR8 article-title: Natural assemblages of marine proteobacteria and members of the Cytophaga-Flovobacter cluster consuming low and high molecular weight dissolved organic matter publication-title: Appl Environ Microbiol doi: 10.1128/AEM.66.4.1692-1697.2000 contributor: fullname: Kirchman – volume: 51 start-page: 1262 year: 2006 end-page: 1273 ident: CR42 article-title: Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin publication-title: Limnol Oceanogr doi: 10.4319/lo.2006.51.3.1262 contributor: fullname: Williams – volume: 452 start-page: 741 year: 2008 end-page: 744 ident: CR50 article-title: SAR11 marine bacteria require exogenous reduced sulfur for growth publication-title: Nature doi: 10.1038/nature06776 contributor: fullname: Giovanonni – ident: CR51 – start-page: 91 year: 2002 end-page: 151 ident: CR3 article-title: Production and Removal Processes publication-title: Biogeochemistry of Marine Dissolved Organic Matter doi: 10.1016/B978-012323841-2/50006-3 contributor: fullname: Carlson – volume: 393 start-page: 464 year: 1998 end-page: 467 ident: CR33 article-title: Physiology and molecular phylogeny of coexisting ecotypes publication-title: Natrue doi: 10.1038/30965 contributor: fullname: Chisholm – volume: 9 start-page: 2025 year: 2007 end-page: 2037 ident: CR36 article-title: Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater publication-title: Environ Microbiol doi: 10.1111/j.1462-2920.2007.01318.x contributor: fullname: Moran – volume: 48 start-page: 1983 year: 2001 end-page: 2004 ident: CR11 article-title: Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00166-1 contributor: fullname: Chisholm – volume: 371 start-page: 405 year: 1994 end-page: 408 ident: CR5 article-title: Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea publication-title: Nature doi: 10.1038/371405a0 contributor: fullname: Michaels – volume: 43 start-page: 491 year: 1996 end-page: 515 ident: CR4 article-title: Stocks and dynamics of bacterioplankton in the Northwestern Sargasso Sea publication-title: Deep Sea Res II doi: 10.1016/0967-0645(95)00101-8 contributor: fullname: Sleeter – volume: 49 start-page: 1073 year: 2004 end-page: 1083 ident: CR6 article-title: Interactions between DOC, microbial processes, and community structure in the mesopelagic zone of the northwestern Sargasso Sea publication-title: Limnol and Oceanog doi: 10.4319/lo.2004.49.4.1073 contributor: fullname: Vergin – volume: 45 start-page: 107 year: 2006 end-page: 113 ident: CR32 article-title: SAR11 dominance among metabolically active low nucleic acid bacterioplankton in surface waters along an Atlantic meridional transect publication-title: Aquat Microbial Ecol doi: 10.3354/ame045107 contributor: fullname: Burkill – volume: 93 start-page: 7979 year: 1996 end-page: 7984 ident: CR17 article-title: 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria phylum publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.93.15.7979 contributor: fullname: Adair – start-page: 85 year: 2000 end-page: 120 ident: CR10 article-title: Bacterial production and biomass in the ocean publication-title: Microbial Ecology of the Oceans contributor: fullname: Ducklow – volume: 48 start-page: 1405 year: 2001 end-page: 1447 ident: CR46 article-title: Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): A decade-scale look at ocean biology and biogeochemistry publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00148-X contributor: fullname: Knap – volume: 105 start-page: 2504 year: 2008 end-page: 2509 ident: CR26 article-title: Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0712205105 contributor: fullname: Ward – volume: 309 start-page: 1242 year: 2005 end-page: 1245 ident: CR18 article-title: Genome streamlining in a cosmopolitan oceanic bacterium publication-title: Science doi: 10.1126/science.1114057 contributor: fullname: Baptista – volume: 24 start-page: 117 year: 2001 end-page: 127 ident: CR47 article-title: Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay publication-title: Aquat Microbial Ecol doi: 10.3354/ame024117 contributor: fullname: DeLong – volume: 2 start-page: 27 year: 2007 ident: CR53 article-title: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data publication-title: Biology Direct doi: 10.1186/1745-6150-2-27 contributor: fullname: Giovannoni – volume: 2 start-page: 17 year: 2001 end-page: 25 ident: CR27 article-title: Terminal Restriction Fragment Patterns—a tool for comparing microbial communities and assessing community dynamics publication-title: Curr Iss Int Microbiol contributor: fullname: Kitts – volume: 420 start-page: 806 year: 2002 end-page: 809 ident: CR34 article-title: High cellular ab unbundance of the SAR11 bacterioplankton clade in seawater publication-title: Nature doi: 10.1038/nature01240 contributor: fullname: Carlson – volume: 345 start-page: 60 year: 1990 end-page: 63 ident: CR16 article-title: Genetic diversity in Sargasso Sea bacterioplankton publication-title: Nature doi: 10.1038/345060a0 contributor: fullname: Field – volume: 2 start-page: 303 year: 2004 end-page: 314 ident: CR2 article-title: Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence hybridization publication-title: Limnol Oceanogr Methods doi: 10.4319/lom.2004.2.303 contributor: fullname: Kirchman – volume: 62 start-page: 1171 year: 1996 end-page: 1177 ident: CR21 article-title: Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans publication-title: Appl Environ Microbio contributor: fullname: Giovannoni – volume: 361 start-page: 1985 year: 2006 end-page: 1996 ident: CR7 article-title: Toward a conceptual and operational union of bacterial systematics, ecology, and evolution publication-title: Phil Trans R Soc B doi: 10.1098/rstb.2006.1918 contributor: fullname: Cohan – volume: 63 start-page: 1441 year: 1997 end-page: 1448 ident: CR54 article-title: A novel delta-proteobacterial lineage from the lower ocean surface layer publication-title: Applied and Environmental Microbiology contributor: fullname: Giovannoni – volume: 2 start-page: 39 year: 2006 end-page: 50 ident: CR38 article-title: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics publication-title: Environ Microbiol doi: 10.1046/j.1462-2920.2000.00081.x contributor: fullname: Timmis – start-page: 121 year: 2000 end-page: 152 ident: CR37 article-title: Production mechanisms of dissolved organic matter publication-title: Microbial Ecology of the Oceans contributor: fullname: Nagata – volume: 71 start-page: 1671 year: 2005 end-page: 1673 ident: CR43 article-title: Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novel pmoA cluster in a forest soil publication-title: Appl Environ Microbiol doi: 10.1128/AEM.71.3.1671-1673.2005 contributor: fullname: Braker – volume: 30 start-page: 1843 year: 2007 end-page: 1846 ident: CR14 article-title: Emergent biogeography of microbial communities in a model ocean publication-title: Science doi: 10.1126/science.1138544 contributor: fullname: Chisholm – volume: 320 start-page: 1081 year: 2008 end-page: 1085 ident: CR24 article-title: Resource partitioning and sympatric differentiation among closely related bacterioplankton publication-title: Science doi: 10.1126/science.1157890 contributor: fullname: Polzl – volume: 18 start-page: 293 year: 1999 end-page: 300 ident: CR28 article-title: Utilization of dissolved protein and amino acids in the northern Sargasso Sea publication-title: Aquat Microbial Ecol doi: 10.3354/ame018293 contributor: fullname: Kirchman – volume: 32 start-page: 1363 year: 2004 end-page: 1371 ident: CR30 article-title: ARB: a software environment for sequence data publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh293 contributor: fullname: Yadhukumar – volume: 53 start-page: 835 year: 2008 end-page: 850 ident: CR55 article-title: Diel carbon monoxide cycling in the upper Sargasso Sea near Bermuda at the onset of spring and in midsummer publication-title: Limnol Oceanog doi: 10.4319/lo.2008.53.2.0835 contributor: fullname: Wang – volume: 418 start-page: 630 year: 2002 end-page: 633 ident: CR40 article-title: Cultivation of the ubiquitous SAR11 marine bacterioplankton clade publication-title: Nature doi: 10.1038/nature00917 contributor: fullname: Giovannoni – volume: 50 start-page: 1687 year: 2005 end-page: 1696 ident: CR35 article-title: Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site publication-title: Limnol Oceanogr doi: 10.4319/lo.2005.50.5.1687 contributor: fullname: Giovannoni – volume: 57 start-page: 369 year: 2003 end-page: 394 ident: CR41 article-title: The uncultured microbial majority publication-title: Annu Rev Microbiol doi: 10.1146/annurev.micro.57.030502.090759 contributor: fullname: Giovannoni – volume: 63 start-page: 4516 year: 1997 end-page: 4522 ident: CR29 article-title: Characterization of microbial diversity by determining terminal restriction fragment length polymorphism of genes encoding 16s rRNA publication-title: Appl Environ Microbiol contributor: fullname: Forney – volume: 438 start-page: 82 year: 2005 end-page: 85 ident: CR19 article-title: Proteorhodopsin in the ubiquitous marine bacterium SAR11 publication-title: Nature doi: 10.1038/nature04032 contributor: fullname: Vergin – volume: 311 start-page: 496 year: 2006 end-page: 503 ident: CR9 article-title: Community genomics among stratified microbial assemblages in the ocean's interior publication-title: Science doi: 10.1126/science.1120250 contributor: fullname: Frigaard – volume: 69 start-page: 2555 year: 2003 end-page: 2562 ident: CR12 article-title: Post-amplification Klenow fragment treatment alleviates PCR bias caused by partially single-stranded amplicons publication-title: Aquat Environ Microbiol doi: 10.1128/AEM.69.5.2555-2562.2003 contributor: fullname: Friedrich – ident: CR44 – volume: 25 start-page: 943 year: 1980 end-page: 948 ident: CR39 article-title: The use of DAPI for identifying and counting aquatic microflora publication-title: Limnol Oceanogr doi: 10.4319/lo.1980.25.5.0943 contributor: fullname: Feig – volume: 70 start-page: 4129 year: 2004 end-page: 4135 ident: CR31 article-title: Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean publication-title: Appl Environ Microbiol doi: 10.1128/AEM.70.7.4129-4135.2004 contributor: fullname: Kirchman – volume: 304 start-page: 66 year: 2004 end-page: 72 ident: CR52 article-title: Environmental genome shotgun sequencing of the Sargasso Sea publication-title: Science doi: 10.1126/science.1093857 contributor: fullname: Eisen – volume: 48 start-page: 1649 year: 2001 end-page: 1667 ident: CR22 article-title: Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: Control by Convective Overturn publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00153-3 contributor: fullname: Carlson – volume: 63 start-page: 983 year: 1998 end-page: 989 ident: CR48 article-title: Kinetic bias in estimate of costal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity publication-title: Appl Environ Microbiol contributor: fullname: Giovannoni – volume: 53 start-page: 459 year: 2006 end-page: 512 ident: CR23 article-title: Functional group modeling: Progress, challenges and prospects publication-title: Deep Sea Research II doi: 10.1016/j.dsr2.2006.01.025 contributor: fullname: Carlson – volume: 103 start-page: 13104 year: 2006 end-page: 13109 ident: CR15 article-title: Annually reoccurring bacterial communities are predictable from ocean conditions publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0602399103 contributor: fullname: Naeem – volume: 426 start-page: 32 year: 2003 ident: CR25 article-title: Metabolic balance of the open sea publication-title: Nature doi: 10.1038/426032a contributor: fullname: Emerson – ident: CR20 – volume: 97 start-page: 7305 year: 1992 end-page: 7316 ident: CR45 article-title: Evidence of the barrier layer in the surface layer of the tropics publication-title: J Geophys Res doi: 10.1029/92JC00407 contributor: fullname: Tomczak – volume: 304 start-page: 66 year: 2004 ident: 2024020117222032400_CR52 article-title: Environmental genome shotgun sequencing of the Sargasso Sea publication-title: Science doi: 10.1126/science.1093857 contributor: fullname: Venter – start-page: 121 volume-title: Microbial Ecology of the Oceans year: 2000 ident: 2024020117222032400_CR37 contributor: fullname: Nagata – volume: 48 start-page: 1983 year: 2001 ident: 2024020117222032400_CR11 article-title: Phytoplankton population dynamics at the Bermuda Atlantic Time-series station in the Sargasso Sea publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00166-1 contributor: fullname: DuRand – volume: 103 start-page: 13104 year: 2006 ident: 2024020117222032400_CR15 article-title: Annually reoccurring bacterial communities are predictable from ocean conditions publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0602399103 contributor: fullname: Fuhrman – volume: 320 start-page: 1081 year: 2008 ident: 2024020117222032400_CR24 article-title: Resource partitioning and sympatric differentiation among closely related bacterioplankton publication-title: Science doi: 10.1126/science.1157890 contributor: fullname: Hunt – volume: 2 start-page: 303 year: 2004 ident: 2024020117222032400_CR2 article-title: Composition of estuarine bacterial communities assessed by denaturing gradient gel electrophoresis and fluorescence in situ hybridization publication-title: Limnol Oceanogr Methods doi: 10.4319/lom.2004.2.303 contributor: fullname: Castle – volume: 97 start-page: 7305 year: 1992 ident: 2024020117222032400_CR45 article-title: Evidence of the barrier layer in the surface layer of the tropics publication-title: J Geophys Res doi: 10.1029/92JC00407 contributor: fullname: Sprintall – ident: 2024020117222032400_CR44 – volume: 51 start-page: 1262 year: 2006 ident: 2024020117222032400_CR42 article-title: Prokaryotic respiration and production in the meso- and bathypelagic realm of the eastern and western North Atlantic basin publication-title: Limnol Oceanogr doi: 10.4319/lo.2006.51.3.1262 contributor: fullname: Reinthaler – volume: 18 start-page: 293 year: 1999 ident: 2024020117222032400_CR28 article-title: Utilization of dissolved protein and amino acids in the northern Sargasso Sea publication-title: Aquat Microbial Ecol doi: 10.3354/ame018293 contributor: fullname: Keil – volume: 43 start-page: 491 year: 1996 ident: 2024020117222032400_CR4 article-title: Stocks and dynamics of bacterioplankton in the Northwestern Sargasso Sea publication-title: Deep Sea Res II doi: 10.1016/0967-0645(95)00101-8 contributor: fullname: Carlson – volume: 63 start-page: 983 year: 1998 ident: 2024020117222032400_CR48 article-title: Kinetic bias in estimate of costal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity publication-title: Appl Environ Microbiol doi: 10.1128/aem.63.3.983-989.1997 contributor: fullname: Suzuki – volume: 452 start-page: 741 year: 2008 ident: 2024020117222032400_CR50 article-title: SAR11 marine bacteria require exogenous reduced sulfur for growth publication-title: Nature doi: 10.1038/nature06776 contributor: fullname: Tripp – start-page: 85 volume-title: Microbial Ecology of the Oceans year: 2000 ident: 2024020117222032400_CR10 contributor: fullname: Ducklow – volume: 93 start-page: 7979 year: 1996 ident: 2024020117222032400_CR17 article-title: 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the green non-sulfur bacteria phylum publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.93.15.7979 contributor: fullname: Giovannoni – volume: 62 start-page: 1171 year: 1996 ident: 2024020117222032400_CR21 article-title: Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans publication-title: Appl Environ Microbio doi: 10.1128/aem.62.4.1171-1177.1996 contributor: fullname: Gordon – volume: 2 start-page: 27 year: 2007 ident: 2024020117222032400_CR53 article-title: Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data publication-title: Biology Direct doi: 10.1186/1745-6150-2-27 contributor: fullname: Wilhelm – volume: 30 start-page: 1843 year: 2007 ident: 2024020117222032400_CR14 article-title: Emergent biogeography of microbial communities in a model ocean publication-title: Science doi: 10.1126/science.1138544 contributor: fullname: Follows – volume: 9 start-page: 2025 year: 2007 ident: 2024020117222032400_CR36 article-title: Bacterioplankton assemblages transforming dissolved organic compounds in coastal seawater publication-title: Environ Microbiol doi: 10.1111/j.1462-2920.2007.01318.x contributor: fullname: Mou – volume: 71 start-page: 1671 year: 2005 ident: 2024020117222032400_CR43 article-title: Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novel pmoA cluster in a forest soil publication-title: Appl Environ Microbiol doi: 10.1128/AEM.71.3.1671-1673.2005 contributor: fullname: Ricke – volume: 53 start-page: 835 year: 2008 ident: 2024020117222032400_CR55 article-title: Diel carbon monoxide cycling in the upper Sargasso Sea near Bermuda at the onset of spring and in midsummer publication-title: Limnol Oceanog doi: 10.4319/lo.2008.53.2.0835 contributor: fullname: Zafiriou – volume: 63 start-page: 4516 year: 1997 ident: 2024020117222032400_CR29 article-title: Characterization of microbial diversity by determining terminal restriction fragment length polymorphism of genes encoding 16s rRNA publication-title: Appl Environ Microbiol doi: 10.1128/aem.63.11.4516-4522.1997 contributor: fullname: Liu – volume: 50 start-page: 1687 year: 2005 ident: 2024020117222032400_CR35 article-title: Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site publication-title: Limnol Oceanogr doi: 10.4319/lo.2005.50.5.1687 contributor: fullname: Morris – volume: 53 start-page: 459 year: 2006 ident: 2024020117222032400_CR23 article-title: Functional group modeling: Progress, challenges and prospects publication-title: Deep Sea Research II doi: 10.1016/j.dsr2.2006.01.025 contributor: fullname: Hood – volume: 60 start-page: 98 year: 2007 ident: 2024020117222032400_CR1 article-title: Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH publication-title: Fems Microbiol Ecol doi: 10.1111/j.1574-6941.2006.00276.x contributor: fullname: Alonso-Saez – volume: 345 start-page: 60 year: 1990 ident: 2024020117222032400_CR16 article-title: Genetic diversity in Sargasso Sea bacterioplankton publication-title: Nature doi: 10.1038/345060a0 contributor: fullname: Giovannoni – volume: 63 start-page: 1441 year: 1997 ident: 2024020117222032400_CR54 article-title: A novel delta-proteobacterial lineage from the lower ocean surface layer publication-title: Applied and Environmental Microbiology doi: 10.1128/aem.63.4.1441-1448.1997 contributor: fullname: Wright – volume: 24 start-page: 117 year: 2001 ident: 2024020117222032400_CR47 article-title: Quantitative mapping of bacterioplankton populations in seawater: field tests across an upwelling plume in Monterey Bay publication-title: Aquat Microbial Ecol doi: 10.3354/ame024117 contributor: fullname: Suzuki – volume: 438 start-page: 82 year: 2005 ident: 2024020117222032400_CR19 article-title: Proteorhodopsin in the ubiquitous marine bacterium SAR11 publication-title: Nature doi: 10.1038/nature04032 contributor: fullname: Giovannoni – volume: 426 start-page: 32 year: 2003 ident: 2024020117222032400_CR25 article-title: Metabolic balance of the open sea publication-title: Nature doi: 10.1038/426032a contributor: fullname: Karl – volume: 393 start-page: 464 year: 1998 ident: 2024020117222032400_CR33 article-title: Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes publication-title: Natrue doi: 10.1038/30965 contributor: fullname: Moore – start-page: 91 volume-title: Biogeochemistry of Marine Dissolved Organic Matter year: 2002 ident: 2024020117222032400_CR3 doi: 10.1016/B978-012323841-2/50006-3 contributor: fullname: Carlson – volume: 311 start-page: 496 year: 2006 ident: 2024020117222032400_CR9 article-title: Community genomics among stratified microbial assemblages in the ocean's interior publication-title: Science doi: 10.1126/science.1120250 contributor: fullname: DeLong – volume: 371 start-page: 405 year: 1994 ident: 2024020117222032400_CR5 article-title: Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea publication-title: Nature doi: 10.1038/371405a0 contributor: fullname: Carlson – volume: 48 start-page: 1405 year: 2001 ident: 2024020117222032400_CR46 article-title: Overview of the US JGOFS Bermuda Atlantic Time-series Study (BATS): A decade-scale look at ocean biology and biogeochemistry publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00148-X contributor: fullname: Steinberg – ident: 2024020117222032400_CR51 – volume: 49 start-page: 1073 year: 2004 ident: 2024020117222032400_CR6 article-title: Interactions between DOC, microbial processes, and community structure in the mesopelagic zone of the northwestern Sargasso Sea publication-title: Limnol and Oceanog doi: 10.4319/lo.2004.49.4.1073 contributor: fullname: Carlson – volume: 309 start-page: 1242 year: 2005 ident: 2024020117222032400_CR18 article-title: Genome streamlining in a cosmopolitan oceanic bacterium publication-title: Science doi: 10.1126/science.1114057 contributor: fullname: Giovannoni – volume: 70 start-page: 4129 year: 2004 ident: 2024020117222032400_CR31 article-title: Contribution of SAR11 bacteria to dissolved dimethylsulfoniopropionate and amino acid uptake in the North Atlantic ocean publication-title: Appl Environ Microbiol doi: 10.1128/AEM.70.7.4129-4135.2004 contributor: fullname: Malmstrom – volume: 32 start-page: 1363 year: 2004 ident: 2024020117222032400_CR30 article-title: ARB: a software environment for sequence data publication-title: Nucleic Acids Res doi: 10.1093/nar/gkh293 contributor: fullname: Ludwig – volume: 361 start-page: 1985 year: 2006 ident: 2024020117222032400_CR7 article-title: Toward a conceptual and operational union of bacterial systematics, ecology, and evolution publication-title: Phil Trans R Soc B doi: 10.1098/rstb.2006.1918 contributor: fullname: Cohan – volume: 420 start-page: 806 year: 2002 ident: 2024020117222032400_CR34 article-title: High cellular ab unbundance of the SAR11 bacterioplankton clade in seawater publication-title: Nature doi: 10.1038/nature01240 contributor: fullname: Morris – volume: 57 start-page: 369 year: 2003 ident: 2024020117222032400_CR41 article-title: The uncultured microbial majority publication-title: Annu Rev Microbiol doi: 10.1146/annurev.micro.57.030502.090759 contributor: fullname: Rappé – volume-title: PAUP* Phylogenetic Analysis Using Parsimony (*and other methods) year: 2002 ident: 2024020117222032400_CR49 contributor: fullname: Swofford – volume: 105 start-page: 2504 year: 2008 ident: 2024020117222032400_CR26 article-title: Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics publication-title: Proc Natl Acad Sci USA doi: 10.1073/pnas.0712205105 contributor: fullname: Koeppel – volume: 69 start-page: 2555 year: 2003 ident: 2024020117222032400_CR12 article-title: Post-amplification Klenow fragment treatment alleviates PCR bias caused by partially single-stranded amplicons publication-title: Aquat Environ Microbiol doi: 10.1128/AEM.69.5.2555-2562.2003 contributor: fullname: Egert – volume: 63 start-page: 63 year: 1997 ident: 2024020117222032400_CR13 article-title: Diversity and depth-specific distribution of SAR 11 cluster rRNA genes from marine planktonic bacteria publication-title: App Environ Microbiol doi: 10.1128/aem.63.1.63-70.1997 contributor: fullname: Field – volume: 2 start-page: 17 year: 2001 ident: 2024020117222032400_CR27 article-title: Terminal Restriction Fragment Patterns—a tool for comparing microbial communities and assessing community dynamics publication-title: Curr Iss Int Microbiol contributor: fullname: Kitts – ident: 2024020117222032400_CR20 – volume: 25 start-page: 943 year: 1980 ident: 2024020117222032400_CR39 article-title: The use of DAPI for identifying and counting aquatic microflora publication-title: Limnol Oceanogr doi: 10.4319/lo.1980.25.5.0943 contributor: fullname: Porter – volume: 418 start-page: 630 year: 2002 ident: 2024020117222032400_CR40 article-title: Cultivation of the ubiquitous SAR11 marine bacterioplankton clade publication-title: Nature doi: 10.1038/nature00917 contributor: fullname: Rappé – volume: 45 start-page: 107 year: 2006 ident: 2024020117222032400_CR32 article-title: SAR11 dominance among metabolically active low nucleic acid bacterioplankton in surface waters along an Atlantic meridional transect publication-title: Aquat Microbial Ecol doi: 10.3354/ame045107 contributor: fullname: Mary – volume: 48 start-page: 1649 year: 2001 ident: 2024020117222032400_CR22 article-title: Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: Control by Convective Overturn publication-title: Deep Sea Res II doi: 10.1016/S0967-0645(00)00153-3 contributor: fullname: Hansell – volume: 66 start-page: 1692 year: 2000 ident: 2024020117222032400_CR8 article-title: Natural assemblages of marine proteobacteria and members of the Cytophaga-Flovobacter cluster consuming low and high molecular weight dissolved organic matter publication-title: Appl Environ Microbiol doi: 10.1128/AEM.66.4.1692-1697.2000 contributor: fullname: Cottrell – volume: 2 start-page: 39 year: 2006 ident: 2024020117222032400_CR38 article-title: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics publication-title: Environ Microbiol doi: 10.1046/j.1462-2920.2000.00081.x contributor: fullname: Osborn |
SSID | ssj0057667 |
Score | 2.426823 |
Snippet | Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence
in situ
hybridization (FISH) over eight depths in the surface... Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the surface... Abstract Bacterioplankton belonging to the SAR11 clade of a-proteobacteria were counted by fluorescence in situ hybridization (FISH) over eight depths in the... |
SourceID | proquest crossref pubmed springer nature |
SourceType | Aggregation Database Index Database Publisher |
StartPage | 283 |
SubjectTerms | Alphaproteobacteria - growth & development Annual distribution Bermuda Biodiversity Biomedical and Life Sciences Cloning, Molecular Colony Count, Microbial - methods Distribution patterns DNA Fingerprinting DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Ecology Ecotypes Evolutionary Biology Fluorescence Gene Library Genes, rRNA Hybridization In Situ Hybridization, Fluorescence Life Sciences Microbial Ecology Microbial Genetics and Genomics Microbiology Molecular Sequence Data Nutrients original-article Phylogeny Physiology Polymorphism, Restriction Fragment Length Population dynamics RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Seasons Seawater - microbiology Sequence Analysis, DNA Sequence Homology, Nucleic Acid Time series Water column |
Title | Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea |
URI | http://dx.doi.org/10.1038/ismej.2008.117 https://link.springer.com/article/10.1038/ismej.2008.117 https://www.ncbi.nlm.nih.gov/pubmed/19052630 https://www.proquest.com/docview/1029887432 https://search.proquest.com/docview/20375413 https://search.proquest.com/docview/66939457 |
Volume | 3 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Nb9QwEB1BKyQuqOVzaSk-IMHFIokTxz6hglpVHCrUpdLeIjueiFZsEsjuAX59x3ayS0XhbMd2ZjwzLx5nHsCbArVUDg03qTI8J0TPbeEUTxJsbFYq22Co9nkuzy7zz4tiMR64DeO1ysknBkftutqfkZN1Z5oMIhfZh_4H96xRPrs6Umjch900IzBB-7lcbD64CEoHBlmKkCkvyVNPRRuFen81LPE6XqVMA1nZNijdLql5C3L-lS4NUeh0Dx6N8JEdR33vwz1sH8ODSCj56wks52gCtmYuMs0PrGvY_PgiTVm_oeoa2FXLCPgxXPffOhqJmdaxJQ5dj98NuUL221fw94_6Xm1gXI8VFdjcE-OSShnN9BQuT0--fjrjI6ECr4usWHFJaCkxqOscnbZCGqsMEl60FKSUtZmWKEVZa7LqWjZSmboUeVY3OneISHJ7BjstLeAFMDL7wknjCEA4-uZB6_9R1S5zwiRYoJvB20miVR_rZlQh3y1UFWQf-S9J9jM4iALf9Avtvjm0Hk5aqEbrGqrtXpjB600z2YVPdpgWu_VAw3ty31T8u4eUWui8oCmeR-1uF6p9FRyRzODdpO4_J7_rLV7-f50H8DCmofzltUPYWf1c4ytCMyt7FLbsEex-PDn_cnEDOeb1ag |
link.rule.ids | 315,786,790,12083,21416,27955,27956,31752,31753,33777,33778,43343,43838,74100,74657 |
linkProvider | ProQuest |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Nb9QwELWgCMEFtXwuLa0PleBikcSOY59QhVptofTQbaW9RXY8UYvYJJDdA_x6xnaySwXlbMd2ZjwzLx5nHiGHOWipHBhmUmWYQETPbO4USxKobVYoW0Oo9nkup1fi0zyfDwdu_XCtcvSJwVG7tvJn5GjdmUaDEDz70H1nnjXKZ1cHCo375IHgXPh9XszXH1wIpQODLEbIlBXoqceijVy9v-kX8DVepUwDWdkmKN0uqXkLcv6VLg1R6GSbPBngIz2K-t4h96B5Sh5GQsmfz8hiBiZga-oi03xP25rOji7SlHZrqq6e3jQUgR-FVXfd4kjUNI4uoG87-GbQFdJfvoK_f9T3agLjeqyoQGeeGBdVSnGm5-Tq5Pjy45QNhAqsyrN8ySSipcSArgQ4bbk0VhlAvGgxSClrMy1B8qLSaNWVrKUyVcFFVtVaOABAub0gWw0u4BWhaPa5k8YhgHD4zQPW_6OqXea4SSAHNyFvR4mWXaybUYZ8N1dlkH3kv0TZT8huFPi6X2j3zaF1b9RCOVhXX272woQcrJvRLnyywzTQrnoc3pP7pvzuHlJqrkWOU7yM2t0sVPsqODyZkHejuv-c_F9v8fr_6zwgj6aXX87Ks9Pzz7vkcUxJ-Ytse2Rr-WMFbxDZLO1-2L6_AS5j9r0 |
linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagFYgL4s3SQn1AgovVJI4d-4RK21V5aFV1qdRbZMcT0aqbBLJ7gF_P2E52qXic7djOjGf8OTOZj5DXArRUDgwzqTIsR0TPrHCKJQnUNiuUrSFU-5zJk_P844W4GPKf-iGtcvSJwVG7tvLfyNG6M40GkfNsvx7SIk6Ppu-6b8wzSPlI60CncZtsF7kUeBHbfn88Oz0b_TIC68Ani-dlygr022MJR672L_sFXMXEyjRQl22OqJsFNm8A0D-Cp-FMmj4g9wcwSQ-i9h-SW9A8InciveSPx2QxBxOQNnWRd76nbU3nB2dpSrs1cVdPLxuKMJDCqvva4kjUNI4uoG87uDboGOlPX8_fP-p7NYF_PdZXoHNPk4sKpjjTE3I-Pf5yeMIGegVWiUwsmUTslBjQVQ5OWy6NVQYQPVo8spS1mZYgeVFptPFK1lKZquB5VtU6dwCAcntKthpcwHNC0QkIJ41DOOHwBgTW_7GqXea4SUCAm5A3o0TLLlbRKEP0m6syyD6yYaLsJ2QnCnzdL7T75tC6O2qhHGytLzc7Y0L21s1oJT70YRpoVz0O76l-U_7vHlJqrnOBUzyL2t0sVPuaODyZkLejun-f_G9v8eL_69wjd3Hvlp8_zD7tkHsxPuWz2nbJ1vL7Cl4izFnaV8P-_QUL6_xg |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Seasonal+dynamics+of+SAR11+populations+in+the+euphotic+and+mesopelagic+zones+of+the+northwestern+Sargasso+Sea&rft.jtitle=The+ISME+Journal&rft.au=Carlson%2C+Craig+A&rft.au=Morris%2C+Robert&rft.au=Parsons%2C+Rachel&rft.au=Treusch%2C+Alexander+H&rft.date=2009-03-01&rft.issn=1751-7362&rft.eissn=1751-7370&rft.volume=3&rft.issue=3&rft.spage=283&rft.epage=295&rft_id=info:doi/10.1038%2Fismej.2008.117&rft.externalDBID=n%2Fa&rft.externalDocID=10_1038_ismej_2008_117 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1751-7362&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1751-7362&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1751-7362&client=summon |