Genesis and Gappa: processing, analyzing and visualizing phylogenetic (placement) data

• Published in: Bioinformatics Vol. 36; no. 10; pp. 3263 - 3265
• Main Authors: Czech, Lucas, Barbera, Pierre, Stamatakis, Alexandros
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.05.2020
• Subjects: Applications Notes; Gene Library; Libraries; Phylogeny; Software

Abstract Summary We present genesis, a library for working with phylogenetic data, and gappa, an accompanying command-line tool for conducting typical analyses on such data. The tools target phylogenetic trees and phylogenetic placements, sequences, taxonomies and other relevant data types, offer hi...