Strategies and methods for studying the rhizosphere--the plant science toolbox

This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tool...

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Published inPlant and soil Vol. 321; no. 1-2; pp. 431 - 456
Main Authors Neumann, Günter, George, Timothy S, Plassard, Claude
Format Journal Article Conference Proceeding
LanguageEnglish
Published Dordrecht Dordrecht : Springer Netherlands 01.08.2009
Springer
Springer Netherlands
Springer Nature B.V
Springer Verlag
Subjects
Acid soils
Agricultural soils
Agronomy. Soil science and plant productions
Animal, plant and microbial ecology
Biological and medical sciences
Biomedical and Life Sciences
carbon
crops
Ecology
ecosystems
Environmental factors
Fundamental and applied biological sciences. Psychology
General agronomy. Plant production
Genotype & phenotype
Geochemistry
Ions
Life Sciences
Nutrient uptake
Nutrients
Organic soils
Phosphorus
physicochemical properties
Plant biology
Plant growth
Plant nutrition
Plant Physiology
Plant roots
Plant Sciences
Plant species
Plants
Remote sensing
reporter genes
REVIEW ARTICLE
Rhizosphere
root growth
roots
Soil biochemistry
Soil microorganisms
Soil samples
Soil Science & Conservation
Soil-plant relationships. Soil fertility
Soil-plant relationships. Soil fertility. Fertilization. Amendments
Vegetal Biology
wild plants
Genotypic variation
Rhizosphere management
Root exudates
Imaging
Root growth
Ion uptake
Nutrient acquisition
Exudate
Genetic variability
Root
Growth
Ions
Acquisition
Rhizosphere
Absorption
Investigation method
Vegetative apparatus
Imagine
Nutrient
Strategy
Exudation
Plant sciences
Soil plant relation
METHODOLOGIE
ROOT GROWTH
NUTRIENT ACQUISITION
ROOT EXUDATES
GENOTYPIC VARIATION
BIOLOGIE MOLECULAIRE
ION UPTAKE
IMAGING
RHIZOSPHERE MANAGEMENT
Online AccessGet full text
ISSN0032-079X
1573-5036
DOI10.1007/s11104-009-9953-9

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Abstract This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tools and culture systems employed for analysis of root growth, root morphology, vitality testing and for monitoring of root activity with respect to nutrient uptake, water, ion and carbon flows in the rhizosphere. The second section on rhizosphere probing covers techniques to detect physicochemical changes in the rhizosphere as a consequence of root activity. This comprises compartment systems to obtain rhizosphere samples, visualisation techniques, reporter gene approaches and remote sensing technologies for monitoring the conditions in the rhizosphere. Approaches for the experimental manipulation of the rhizosphere by use of molecular and genetic methods as tools to study rhizosphere processes are discussed in a third section. Finally it is concluded that in spite of a wide array of methodological approaches developed in the recent past for studying processes and interactions in the rhizosphere mainly under simplified conditions in model experiments, there is still an obvious lack of methods to test the relevance of these findings under real field conditions or even on the scale of ecosystems. This also limits reliable data input and validation in current rhizosphere modelling approaches. Possible interactions between different environmental factors or plant-microbial interactions (e.g. mycorrhizae) are frequently not considered in model experiments. Moreover, most of the available knowledge arises from investigations with a very limited number of plant species, mainly crops and studies considering also intraspecific genotypic differences or the variability within wild plant species are just emerging.
AbstractList This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tools and culture systems employed for analysis of root growth, root morphology, vitality testing and for monitoring of root activity with respect to nutrient uptake, water, ion and carbon flows in the rhizosphere. The second section on rhizosphere probing covers techniques to detect physicochemical changes in the rhizosphere as a consequence of root activity. This comprises compartment systems to obtain rhizosphere samples, visualisation techniques, reporter gene approaches and remote sensing technologies for monitoring the conditions in the rhizosphere. Approaches for the experimental manipulation of the rhizosphere by use of molecular and genetic methods as tools to study rhizosphere processes are discussed in a third section. Finally it is concluded that in spite of a wide array of methodological approaches developed in the recent past for studying processes and interactions in the rhizosphere mainly under simplified conditions in model experiments, there is still an obvious lack of methods to test the relevance of these findings under real field conditions or even on the scale of ecosystems. This also limits reliable data input and validation in current rhizosphere modelling approaches. Possible interactions between different environmental factors or plant-microbial interactions (e.g. mycorrhizae) are frequently not considered in model experiments. Moreover, most of the available knowledge arises from investigations with a very limited number of plant species, mainly crops and studies considering also intraspecific genotypic differences or the variability within wild plant species are just emerging
This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tools and culture systems employed for analysis of root growth, root morphology, vitality testing and for monitoring of root activity with respect to nutrient uptake, water, ion and carbon flows in the rhizosphere. The second section on rhizosphere probing covers techniques to detect physicochemical changes in the rhizosphere as a consequence of root activity. This comprises compartment systems to obtain rhizosphere samples, visualisation techniques, reporter gene approaches and remote sensing technologies for monitoring the conditions in the rhizosphere. Approaches for the experimental manipulation of the rhizosphere by use of molecular and genetic methods as tools to study rhizosphere processes are discussed in a third section. Finally it is concluded that in spite of a wide array of methodological approaches developed in the recent past for studying processes and interactions in the rhizosphere mainly under simplified conditions in model experiments, there is still an obvious lack of methods to test the relevance of these findings under real field conditions or even on the scale of ecosystems. This also limits reliable data input and validation in current rhizosphere modelling approaches. Possible interactions between different environmental factors or plantmicrobial interactions (e.g. mycorrhizae) are frequently not considered in model experiments. Moreover, most of the available knowledge arises from investigations with a very limited number of plant species, mainly crops and studies considering also intraspecific genotypic differences or the variability within wild plant species are just emerging.
This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tools and culture systems employed for analysis of root growth, root morphology, vitality testing and for monitoring of root activity with respect to nutrient uptake, water, ion and carbon flows in the rhizosphere. The second section on rhizosphere probing covers techniques to detect physicochemical changes in the rhizosphere as a consequence of root activity. This comprises compartment systems to obtain rhizosphere samples, visualisation techniques, reporter gene approaches and remote sensing technologies for monitoring the conditions in the rhizosphere. Approaches for the experimental manipulation of the rhizosphere by use of molecular and genetic methods as tools to study rhizosphere processes are discussed in a third section. Finally it is concluded that in spite of a wide array of methodological approaches developed in the recent past for studying processes and interactions in the rhizosphere mainly under simplified conditions in model experiments, there is still an obvious lack of methods to test the relevance of these findings under real field conditions or even on the scale of ecosystems. This also limits reliable data input and validation in current rhizosphere modelling approaches. Possible interactions between different environmental factors or plant-microbial interactions (e.g. mycorrhizae) are frequently not considered in model experiments. Moreover, most of the available knowledge arises from investigations with a very limited number of plant species, mainly crops and studies considering also intraspecific genotypic differences or the variability within wild plant species are just emerging.
Issue Title: Special Issue: Rhizosphere: achievements and challenges/Guest Edited by Yves Dessaux, Philippe Hinsinger and Philippe Lemanceau This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of the related mechanisms, covering a range from simple model experiments up to the field scale. A section on rhizosphere sampling describes tools and culture systems employed for analysis of root growth, root morphology, vitality testing and for monitoring of root activity with respect to nutrient uptake, water, ion and carbon flows in the rhizosphere. The second section on rhizosphere probing covers techniques to detect physicochemical changes in the rhizosphere as a consequence of root activity. This comprises compartment systems to obtain rhizosphere samples, visualisation techniques, reporter gene approaches and remote sensing technologies for monitoring the conditions in the rhizosphere. Approaches for the experimental manipulation of the rhizosphere by use of molecular and genetic methods as tools to study rhizosphere processes are discussed in a third section. Finally it is concluded that in spite of a wide array of methodological approaches developed in the recent past for studying processes and interactions in the rhizosphere mainly under simplified conditions in model experiments, there is still an obvious lack of methods to test the relevance of these findings under real field conditions or even on the scale of ecosystems. This also limits reliable data input and validation in current rhizosphere modelling approaches. Possible interactions between different environmental factors or plant-microbial interactions (e.g. mycorrhizae) are frequently not considered in model experiments. Moreover, most of the available knowledge arises from investigations with a very limited number of plant species, mainly crops and studies considering also intraspecific genotypic differences or the variability within wild plant species are just emerging. [PUBLICATION ABSTRACT]
Author George, Timothy S.
Neumann, Günter
Plassard, Claude
Author_xml – sequence: 1
  fullname: Neumann, Günter
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  fullname: George, Timothy S
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  fullname: Plassard, Claude
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10.2134/jeq2003.8240
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Fri Sep 05 09:08:12 EDT 2025
Fri Jul 25 09:04:44 EDT 2025
Mon Jul 21 09:15:28 EDT 2025
Tue Jul 01 00:58:44 EDT 2025
Thu Apr 24 23:01:03 EDT 2025
Fri Feb 21 02:33:29 EST 2025
Sun Aug 24 12:11:06 EDT 2025
Wed Dec 27 19:10:26 EST 2023
IsPeerReviewed true
IsScholarly true
Issue 1-2
Keywords Genotypic variation
Rhizosphere management
Root exudates
Imaging
Root growth
Ion uptake
Nutrient acquisition
Exudate
Genetic variability
Root
Growth
Ions
Acquisition
Rhizosphere
Absorption
Investigation method
Vegetative apparatus
Imagine
Nutrient
Strategy
Exudation
Plant sciences
Soil plant relation
METHODOLOGIE
ROOT GROWTH
NUTRIENT ACQUISITION
ROOT EXUDATES
GENOTYPIC VARIATION
BIOLOGIE MOLECULAIRE
ION UPTAKE
IMAGING
RHIZOSPHERE MANAGEMENT
Language English
License http://www.springer.com/tdm
CC BY 4.0
Distributed under a Creative Commons Attribution 4.0 International License: http://creativecommons.org/licenses/by/4.0
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MeetingName Rhizosphere: achievements and challenges
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PublicationSubtitle An International Journal on Plant-Soil Relationships
PublicationTitle Plant and soil
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Snippet This review summarizes and discusses methodological approaches for studies on the impact of plant roots on the surrounding rhizosphere and for elucidation of...
Issue Title: Special Issue: Rhizosphere: achievements and challenges/Guest Edited by Yves Dessaux, Philippe Hinsinger and Philippe Lemanceau This review...
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SubjectTerms Acid soils
Agricultural soils
Agronomy. Soil science and plant productions
Animal, plant and microbial ecology
Biological and medical sciences
Biomedical and Life Sciences
carbon
crops
Ecology
ecosystems
Environmental factors
Fundamental and applied biological sciences. Psychology
General agronomy. Plant production
Genotype & phenotype
Geochemistry
Ions
Life Sciences
Nutrient uptake
Nutrients
Organic soils
Phosphorus
physicochemical properties
Plant biology
Plant growth
Plant nutrition
Plant Physiology
Plant roots
Plant Sciences
Plant species
Plants
Remote sensing
reporter genes
REVIEW ARTICLE
Rhizosphere
root growth
roots
Soil biochemistry
Soil microorganisms
Soil samples
Soil Science & Conservation
Soil-plant relationships. Soil fertility
Soil-plant relationships. Soil fertility. Fertilization. Amendments
Vegetal Biology
wild plants
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Title Strategies and methods for studying the rhizosphere--the plant science toolbox
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