The BRAF Pseudogene Functions as a Competitive Endogenous RNA and Induces Lymphoma In Vivo

Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is...

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Published inCell Vol. 161; no. 2; pp. 319 - 332
Main Authors Karreth, Florian A., Reschke, Markus, Ruocco, Anna, Ng, Christopher, Chapuy, Bjoern, Léopold, Valentine, Sjoberg, Marcela, Keane, Thomas M., Verma, Akanksha, Ala, Ugo, Tay, Yvonne, Wu, David, Seitzer, Nina, Velasco-Herrera, Martin Del Castillo, Bothmer, Anne, Fung, Jacqueline, Langellotto, Fernanda, Rodig, Scott J., Elemento, Olivier, Shipp, Margaret A., Adams, David J., Chiarle, Roberto, Pandolfi, Pier Paolo
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 09.04.2015
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Abstract Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is lacking. Here, we report that mice engineered to overexpress either the full-length murine B-Raf pseudogene Braf-rs1 or its pseudo “CDS” or “3′ UTR” develop an aggressive malignancy resembling human diffuse large B cell lymphoma. We show that Braf-rs1 and its human ortholog, BRAFP1, elicit their oncogenic activity, at least in part, as competitive endogenous RNAs (ceRNAs) that elevate BRAF expression and MAPK activation in vitro and in vivo. Notably, we find that transcriptional or genomic aberrations of BRAFP1 occur frequently in multiple human cancers, including B cell lymphomas. Our engineered mouse models demonstrate the oncogenic potential of pseudogenes and indicate that ceRNA-mediated microRNA sequestration may contribute to the development of cancer. [Display omitted] •The BRAF pseudogene functions as a ceRNA for BRAF in humans and mice•Braf-rs1 overexpression promotes B cell lymphoma in mice•Silencing of BRAFP1 affects MAPK signaling and proliferation of human cancer cells•Genomic gains and aberrant expression of BRAFP1 are found in various human cancers The in vivo evidence for the regulatory activity of pseudogenes has been lacking, and their role in disease progression has been correlative. This study now shows that transgenic expression of the BRAF pseudogene induces a malignancy in mice resembling human diffuse large B cell lymphoma, establishing its oncogenic function.
AbstractList Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is lacking. Here, we report that mice engineered to overexpress either the full-length murine B-Raf pseudogene Braf-rs1 or its pseudo "CDS" or "3' UTR" develop an aggressive malignancy resembling human diffuse large B cell lymphoma. We show that Braf-rs1 and its human ortholog, BRAFP1, elicit their oncogenic activity, at least in part, as competitive endogenous RNAs (ceRNAs) that elevate BRAF expression and MAPK activation in vitro and in vivo. Notably, we find that transcriptional or genomic aberrations of BRAFP1 occur frequently in multiple human cancers, including B cell lymphomas. Our engineered mouse models demonstrate the oncogenic potential of pseudogenes and indicate that ceRNA-mediated microRNA sequestration may contribute to the development of cancer.
Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is lacking. Here, we report that mice engineered to overexpress either the full-length murine B-Raf pseudogene Braf-rs1 or its pseudo “CDS” or “3′ UTR” develop an aggressive malignancy resembling human diffuse large B cell lymphoma. We show that Braf-rs1 and its human ortholog, BRAFP1, elicit their oncogenic activity, at least in part, as competitive endogenous RNAs (ceRNAs) that elevate BRAF expression and MAPK activation in vitro and in vivo. Notably, we find that transcriptional or genomic aberrations of BRAFP1 occur frequently in multiple human cancers, including B cell lymphomas. Our engineered mouse models demonstrate the oncogenic potential of pseudogenes and indicate that ceRNA-mediated microRNA sequestration may contribute to the development of cancer. [Display omitted] •The BRAF pseudogene functions as a ceRNA for BRAF in humans and mice•Braf-rs1 overexpression promotes B cell lymphoma in mice•Silencing of BRAFP1 affects MAPK signaling and proliferation of human cancer cells•Genomic gains and aberrant expression of BRAFP1 are found in various human cancers The in vivo evidence for the regulatory activity of pseudogenes has been lacking, and their role in disease progression has been correlative. This study now shows that transgenic expression of the BRAF pseudogene induces a malignancy in mice resembling human diffuse large B cell lymphoma, establishing its oncogenic function.
Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes contribute to cell transformation through several mechanisms. However, in vivo evidence for a causal role of pseudogenes in cancer development is lacking. Here we report that mice engineered to overexpress either the full-length murine B-Raf pseudogene, Braf-rs1 , or its pseudo “CDS” or “3’UTR” develop an aggressive malignancy resembling human diffuse large B-cell lymphoma. We show that Braf-rs1 and its human ortholog, BRAFP1 , elicit their oncogenic activity, at least in part, as competitive endogenous RNAs (ceRNAs) that elevate BRAF expression and MAPK activation in vitro and in vivo . Notably, we find that transcriptional or genomic aberrations of BRAFP1 occur frequently in multiple human cancers including B-cell lymphomas. Our engineered mouse models demonstrate the oncogenic potential of pseudogenes, and indicate that ceRNA-mediated microRNA sequestration may contribute to the development of cancer.
Author Reschke, Markus
Shipp, Margaret A.
Adams, David J.
Rodig, Scott J.
Sjoberg, Marcela
Wu, David
Velasco-Herrera, Martin Del Castillo
Ruocco, Anna
Bothmer, Anne
Keane, Thomas M.
Ng, Christopher
Chiarle, Roberto
Léopold, Valentine
Seitzer, Nina
Chapuy, Bjoern
Elemento, Olivier
Verma, Akanksha
Fung, Jacqueline
Tay, Yvonne
Pandolfi, Pier Paolo
Ala, Ugo
Langellotto, Fernanda
Karreth, Florian A.
AuthorAffiliation 3 Experimental Cancer Genetics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1HH, UK
7 Department of Pathology, Brigham and Women’s Hospital, Boston, MA 02115, USA
1 Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
6 Department of Pathology, Children’s Hospital and Harvard Medical School, Boston, MA 02115, USA
5 Meyer Cancer Center, Weill Cornell Medical College, New York, NY 10021
8 Department of Molecular Biotechnology and Health Sciences, University of Torino, Torino, Italy
4 Department of Physiology and Biophysics, Institute for Computational Biomedicine, Weill Cornell Medical College, New York, NY 10021
2 Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
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– name: 5 Meyer Cancer Center, Weill Cornell Medical College, New York, NY 10021
– name: 7 Department of Pathology, Brigham and Women’s Hospital, Boston, MA 02115, USA
– name: 2 Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
– name: 1 Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
– name: 8 Department of Molecular Biotechnology and Health Sciences, University of Torino, Torino, Italy
– name: 6 Department of Pathology, Children’s Hospital and Harvard Medical School, Boston, MA 02115, USA
Author_xml – sequence: 1
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  givenname: Christopher
  surname: Ng
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  fullname: Léopold, Valentine
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  givenname: Ugo
  surname: Ala
  fullname: Ala, Ugo
  organization: Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
– sequence: 11
  givenname: Yvonne
  surname: Tay
  fullname: Tay, Yvonne
  organization: Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
– sequence: 12
  givenname: David
  surname: Wu
  fullname: Wu, David
  organization: Meyer Cancer Center, Weill Cornell Medical College, New York, NY 10021, USA
– sequence: 13
  givenname: Nina
  surname: Seitzer
  fullname: Seitzer, Nina
  organization: Cancer Research Institute, Beth Israel Deaconess Cancer Center, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215, USA
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  givenname: Martin Del Castillo
  surname: Velasco-Herrera
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  organization: Experimental Cancer Genetics, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1HH, UK
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  givenname: Anne
  surname: Bothmer
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  surname: Fung
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  surname: Langellotto
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  organization: Department of Pathology, Children’s Hospital and Harvard Medical School, Boston, MA 02115, USA
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/25843629$$D View this record in MEDLINE/PubMed
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Author Contribution
F.A.K. and P.P.P conceived and designed the study. F.A.K., M.R., A.R., Y.T., D.W., N.S. and A.B., performed experiments, and F.A.K., M.R. and P.P.P analyzed most data. C.N., J.F. and F.L. carried out immunohistochemistry. U.A. performed miRNA predictions. R.C. and S.J.R. evaluated histopathology of tumors and advised on immunohistochemical validation. M.S., T.M.K., M.D.C.VH. and D.J.A. performed RNAseq analysis. B.C. and M.A.S. provided human samples and cell lines. A.V. and O.E. analyzed BRAFP1 expression in human RNAseq data. F.A.K. and P.P.P. wrote the manuscript with contributions from all authors.
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Snippet Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes...
Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes...
Research over the past decade has suggested important roles for pseudogenes in physiology and disease. In vitro experiments demonstrated that pseudogenes...
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StartPage 319
SubjectTerms Animals
Base Sequence
Humans
Lymphoma, Large B-Cell, Diffuse - genetics
Lymphoma, Large B-Cell, Diffuse - metabolism
Mice
Molecular Sequence Data
Proto-Oncogene Proteins B-raf - genetics
Proto-Oncogene Proteins B-raf - metabolism
Pseudogenes
RNA - metabolism
Title The BRAF Pseudogene Functions as a Competitive Endogenous RNA and Induces Lymphoma In Vivo
URI https://dx.doi.org/10.1016/j.cell.2015.02.043
https://www.ncbi.nlm.nih.gov/pubmed/25843629
https://search.proquest.com/docview/1672607199
https://pubmed.ncbi.nlm.nih.gov/PMC6922011
Volume 161
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